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Version: 1.1.1 | |||||||||
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Package ca.ucalgary.seahawk.gui |
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Class ca.ucalgary.seahawk.gui.DataImportChoiceDialog extends JDialog implements Serializable |
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Serialized Fields |
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MobyDataObject[] dataChoices
JList choiceList
JButton okButton
JButton cancelButton
DataImportChoiceListener listener
String workflowName
Class ca.ucalgary.seahawk.gui.FileAndTextTransferHandler extends TransferHandler implements Serializable |
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Serialized Fields |
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DataFlavor fileFlavor
DataFlavor stringFlavor
MobyContentGUI gui
boolean openDataInNewTab
Class ca.ucalgary.seahawk.gui.FilterSearchWidget extends JPanel implements Serializable |
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Serialized Fields |
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FilterSearch currentFilterSearch
JLabel closeIcon
JToggleButton caseButton
JButton inverseButton
JTextField searchField
JComboBox docPartOptions
MobyContentPane contentPane
Semaphore semaphore
Class ca.ucalgary.seahawk.gui.MobyContentClipboard extends MobyContentPane implements Serializable |
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Serialized Fields |
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MobyContentInstance content
File clipboardFile
MobyDataJob query
MobyDataObjectSet collection
MobyDataType previousImportDataType
MobyNamespace previousImportNS
Pattern commentRegex
Pattern scriptRegex
Pattern styleRegex
Pattern tagRegex
JMenuItem deleteDataPopupItem
MobyDataInstance itemToDelete
Class ca.ucalgary.seahawk.gui.MobyContentGUI extends JFrame implements Serializable |
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Serialized Fields |
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int lastClickX
int lastClickY
JTabbedPane tabbedPane
JLabel status
JPanel statusPanel
JButton backwardButton
JButton forwardButton
JButton openButton
JButton saveButton
JButton filterButton
JButton printButton
JButton helpButton
JButton settingsButton
Transformer moby2HTMLConverter
MobyServicesGUI servicesGUI
DocumentBuilder docBuilder
MobyContentClipboard clipboard
MobyContentHelpPane helpPane
DataFlowRecorder dataRecorder
SeahawkOptionsGUI settingsGUI
boolean setup
Map<K,V> request2tab
int activeTabIndex
Class ca.ucalgary.seahawk.gui.MobyContentHelpPane extends MobyContentPane implements Serializable |
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Class ca.ucalgary.seahawk.gui.MobyContentPane extends JPanel implements Serializable |
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Serialized Fields |
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JScrollPane scrollPane
JTabbedPane tabbedPane
JLabel status
PrintableJEditorPane editorPane
FilterSearchWidget filterSearchWidget
JPanel searchPanel
MobyServicesGUI servicesGUI
MobyContentGUI contentGUI
Vector<E> history
HashMap<K,V> historyTabLabels
HashMap<K,V> filterHistory
HashMap<K,V> deletedFilters
int historyIndex
int lastClickX
int lastClickY
boolean hasFailed
boolean isContentsXML
DataFlowRecorder dataRecorder
List<E> xPtrsReferencedInNextService
Map<K,V> filteredData
boolean filterChanged
Document currentDoc
MutableNodeList currentSelectedData
StringBuffer currentSelectionXPath
List<E> filterableNodes
Map<K,V> jobXPtrs
List<E> origStyles
boolean firstDocRendering
JMenuItem createServicePopupItem
MobyDataInstance itemToReturn
int dot
int mark
int oldMark
int oldDot
boolean dragging
boolean isWrapping
boolean wrappingEnabled
String selectedTextData
boolean overHyperlink
URL lastHyperlinkDragged
URL lastHyperlinkHovered
Class ca.ucalgary.seahawk.gui.MobyDataObjectWidget extends JLabel implements Serializable |
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Serialized Fields |
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MobyPrimaryData targetData
MobyPrimaryData actualData
String name
Vector<E> listeners
Class ca.ucalgary.seahawk.gui.MobyObjectTransferHandler extends FileAndTextTransferHandler implements Serializable |
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Serialized Fields |
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MobyClient client
Class ca.ucalgary.seahawk.gui.MobySecondaryInputGUI extends JDialog implements Serializable |
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Serialized Fields |
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MobyPrimaryData[] inputsPrimary
MobyDataSecondaryInstance[] inputs
JButton cancelButton
String cancelMessage
JButton confirmButton
String confirmMessage
JPanel optionsPanel
Map<K,V> data2widget
ActionListener listener
int handlerCode
boolean showingNew
MobyClient mobyClient
Class ca.ucalgary.seahawk.gui.SeahawkOptionsGUI extends JDialog implements Serializable |
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Serialized Fields |
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JComboBox registryComboBox
JTextPane registryDescTextArea
JTextField registryEndpoint
JTextField registryNamespace
JButton deleteCacheButton
JButton selectCacheDirButton
JTextField converterHostTextField
JTextField converterPortTextField
JTextField cacheExpiryTextField
JFileChooser cacheDirFileChooser
JCheckBox sendReferrerCheckBox
JButton resetButton
JButton okButton
JButton cancelButton
RegistriesList registriesList
String[] registryNames
String lastCustomEndpoint
String lastCustomNamespace
Class ca.ucalgary.seahawk.gui.ServiceSearchDialog extends JDialog implements Serializable |
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Serialized Fields |
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List<E> serviceChoices
DefaultListModel activeChoices
JTextField searchField
JList choiceList
JButton okButton
JButton cancelButton
ServiceChoiceListener listener
Class ca.ucalgary.seahawk.gui.WorkflowPreviewDialog extends JDialog implements Serializable |
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Serialized Fields |
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ca.ucalgary.seahawk.gui.WorkflowPreviewDialog.HintTextField titleField
ca.ucalgary.seahawk.gui.WorkflowPreviewDialog.HintTextArea descArea
ca.ucalgary.seahawk.gui.WorkflowPreviewDialog.HintTextField authorField
JButton okButton
JButton cancelButton
WorkflowPreviewListener listener
ByteArrayOutputStream byteArrayBuffer
String workflowName
DataFlowRecorder dataFlowRecorder
Map<K,V> resultList
Package ca.ucalgary.seahawk.gui.splash |
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Class ca.ucalgary.seahawk.gui.splash.SeahawkSplasher extends JApplet implements Serializable |
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Serialized Fields |
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String[] passedAppletArgs
Class ca.ucalgary.seahawk.gui.splash.SplashWindow extends Window implements Serializable |
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Serialized Fields |
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Image image
boolean paintCalled
SplashWindow.paint(java.awt.Graphics)
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SplashWindow.splash(java.awt.Image, java.lang.String)
Package ca.ucalgary.seahawk.util |
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Class ca.ucalgary.seahawk.util.DynamicJPopupMenu extends JPopupMenu implements Serializable |
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Serialized Fields |
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Object semaphore
Class ca.ucalgary.seahawk.util.PrintableJEditorPane extends JTextPane implements Serializable |
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Class ca.ucalgary.seahawk.util.SplashWindow extends Window implements Serializable |
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Serialized Fields |
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Image image
boolean paintCalled
SplashWindow.paint(java.awt.Graphics)
,
SplashWindow.splash(java.awt.Image, java.lang.String)
Package ca.ucalgary.services |
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Class ca.ucalgary.services.ACDService extends LegacyService implements Serializable |
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Serialized Fields |
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File programBinaryFile
String embossRootDirName
String acdRootDirName
Map<K,V> acdTypes
Map<K,V> acdBasicTypes
Runtime runtime
Vector<E> fixedSecondaryData
Pattern outputPattern
String outputPatternName
Class ca.ucalgary.services.CGIService extends WrapperService<XHTMLForm> implements Serializable |
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Serialized Fields |
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URL remoteFormURL
XHTMLForm formConfig
Map<K,V> mobyPrimary2FormFields
Map<K,V> mobySecondary2FormFields
org.apache.commons.httpclient.HttpClient httpClient
org.apache.commons.httpclient.MultiThreadedHttpConnectionManager connectionManager
Class ca.ucalgary.services.CGIServlet extends WrappingServlet implements Serializable |
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Class ca.ucalgary.services.LegacyService extends MobyServlet implements Serializable |
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Serialized Fields |
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MobyClient mobyClient
TextClient textClient
MobyDataType binaryDataType
Class ca.ucalgary.services.SoapServlet extends WrappingServlet implements Serializable |
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Class ca.ucalgary.services.WrapperService extends LegacyService implements Serializable |
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Class ca.ucalgary.services.WrappingServlet extends javax.servlet.http.HttpServlet implements Serializable |
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Serialized Fields |
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DataRecorder recorder
Transformer responseTransformer
Class ca.ucalgary.services.WSDLService extends WrapperService<WSDLConfig> implements Serializable |
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Serialized Fields |
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URL remoteWSDLUrl
WSDLConfig wsdlConfig
URL endpoint
Transformer nullTransformer
Map<K,V> secondaryTransformers
Map<K,V> uri2XmlFormat
Map<K,V> outXPathString2XPath
Map<K,V> outXPathString2IsRegex
boolean usingRawXml
Package de.mpg.mpiz_koeln.featureClient |
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Class de.mpg.mpiz_koeln.featureClient.FeatureClientException extends Exception implements Serializable |
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serialVersionUID: -367172933470417369L
Package org.biomoby.client |
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Class org.biomoby.client.GraphsServlet extends javax.servlet.http.HttpServlet implements Serializable |
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serialVersionUID: 1L
Serialized Fields |
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CentralAll registry
boolean debug
boolean verbose
long lastRead
long refreshInterval
Package org.biomoby.registry.rdfagent.test |
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Class org.biomoby.registry.rdfagent.test.TestException extends Exception implements Serializable |
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serialVersionUID: -6118119045261170044L
Package org.biomoby.service |
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Class org.biomoby.service.MobyServlet extends javax.servlet.http.HttpServlet implements Serializable |
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Serialized Fields |
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MobyService thisService
boolean isInitialized
boolean hasDataTypeTemplates
boolean isDebug
Map<K,V> templatedServicesMap
Map<K,V> responseContentInstanceMap
Map<K,V> extraConfig
Package org.biomoby.service.dashboard |
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Class org.biomoby.service.dashboard.AbstractPanel extends JPanel implements Serializable |
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Serialized Fields |
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String panelIconFileName
Icon panelIcon
JComponent pComponent
PropertyChannel propertyChannel
Class org.biomoby.service.dashboard.BuildDataTypeTree extends JTree implements Serializable |
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Serialized Fields |
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JPopupMenu popup
PropertyChannel propertyChannel
org.biomoby.service.dashboard.BuildDataTypeTree.ISANode rootContents
org.biomoby.service.dashboard.BuildDataTypeTree.MainNode nameContents
DefaultMutableTreeNode nameNode
DefaultMutableTreeNode lastTriggeredNode
org.biomoby.service.dashboard.BuildDataTypeTree.MemberNode lastTriggeredMember
Class org.biomoby.service.dashboard.CommonBoard extends JPanel implements Serializable |
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Serialized Fields |
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RegistryModel model
PropertyChannel channel
int boardId
JLabel treeTitle
JProgressBarWithCancel pBar
CommonTree tree
GridBagConstraints gbc
Class org.biomoby.service.dashboard.CommonConsole extends JPanel implements Serializable |
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Serialized Fields |
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JTextArea textArea
JCheckBox appendModeBox
JCheckBox verboseModeBox
JButton cleanButton
JButton saveButton
boolean appendMode
boolean verboseMode
JFileChooser saveChooser
PropertyChannel propertyChannel
String verboseEventName
Class org.biomoby.service.dashboard.CommonDataTable extends JTable implements Serializable |
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Serialized Fields |
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org.biomoby.service.dashboard.CommonDataTable.CommonDataTableModel tableModel
Class org.biomoby.service.dashboard.CommonDataTable.CommonDataTableModel extends AbstractTableModel implements Serializable |
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Serialized Fields |
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String[] columnToolTips
String[] columnNames
Class<T>[] columnClasses
Vector<E> data
Class org.biomoby.service.dashboard.CommonTree extends JTree implements Serializable |
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Serialized Fields |
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int treeId
JPopupMenu popup
int lastSorted
PropertyChannel propertyChannel
String rootNode
Class org.biomoby.service.dashboard.DataTypesBoard extends CommonBoard implements Serializable |
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Class org.biomoby.service.dashboard.DataTypesTree extends CommonTree implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
CommonConsole console
boolean showBadGuys
boolean showMembers
JCheckBoxMenuItem deprecatedBox
Class org.biomoby.service.dashboard.DebuggingPanel extends AbstractPanel implements Serializable |
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Serialized Fields |
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JProgressBar memory
CommonConsole console
Class org.biomoby.service.dashboard.DeploymentTable extends CommonDataTable implements Serializable |
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Class org.biomoby.service.dashboard.DeploymentTable.DeploymentTableModel extends org.biomoby.service.dashboard.CommonDataTable.CommonDataTableModel implements Serializable |
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Class org.biomoby.service.dashboard.ExamplePanel extends AbstractPanel implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
Class org.biomoby.service.dashboard.GeneratorPanel extends AbstractPanel implements Serializable |
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Serialized Fields |
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AntModel antModel
RegistryModel registryModel
CommonConsole console
org.tulsoft.tools.gui.JFileChooserWithHistory outputDir
org.tulsoft.tools.gui.JFileChooserWithHistory javadocDir
org.tulsoft.tools.gui.JFileChooserWithHistory dotLocation
JLabel labelDotLocation
JButton dtgenButton
JButton sgenButton
JButton bothButton
JButton dtclsButton
JButton sclsButton
JButton deployButton
JButton undeployButton
JLabel aSelectedCount
JLabel sSelectedCount
JCheckBox dtGenerate
JCheckBox dtCompile
JCheckBox dtJavadoc
JCheckBox dtJar
JCheckBox sGenerate
JCheckBox sCompile
JCheckBox sJavadoc
JCheckBox sJar
org.tulsoft.tools.gui.JTextFieldWithHistory pattern
DeploymentTable dTable
JCheckBox copyBySelect
JRadioButton locally
ActionListener deployListener
Class org.biomoby.service.dashboard.GeneratorPanel.CustomServicesTree extends ServicesTree implements Serializable |
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Class org.biomoby.service.dashboard.JProgressBarWithCancel extends JPanel implements Serializable |
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Serialized Fields |
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JProgressBar progressBar
JButton cancelButton
Class org.biomoby.service.dashboard.MobyUnitTestingPanel extends AbstractPanel implements Serializable |
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serialVersionUID: -370045034538998854L
Serialized Fields |
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RegistryModel registryModel
UnitTestingServiceCallermodel callerModel
JLabel selService
org.tulsoft.tools.gui.JFileChooserWithHistory inFile
org.tulsoft.tools.gui.JFileChooserWithHistory rdfFile
JButton runButton
JButton stopButton
JButton testXpathButton
JButton saveRDFButton
JButton downloadTestButton
JButton testRegexButton
JButton testOutputButton
JButton copyServiceResultsButton
JCheckBox iFromFile
JFileChooser saveChooser
org.tulsoft.tools.gui.JTextFieldWithHistory endpoint
org.tulsoft.tools.gui.JTextFieldWithHistory regularExpression
org.tulsoft.tools.gui.JTextFieldWithHistory xpathExpression
JPanel dataTablesPanel
ServiceInputPanel inputDataTables
org.biomoby.service.dashboard.MobyUnitTestingPanel.MySwingWorker runWorker
UnitTestingResultPanel results
JComponent resultsComp
JSplitPane resSplit
JTextArea regularExpressionMatchingText
Color default_button_color
String serviceOutput
ActionListener howToListener
Class org.biomoby.service.dashboard.MobyUnitTestingPanel.CustomServicesTree extends ServicesTree implements Serializable |
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serialVersionUID: 5884117301201885425L
Class org.biomoby.service.dashboard.NamespacesBoard extends CommonBoard implements Serializable |
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Class org.biomoby.service.dashboard.NamespacesTree extends CommonTree implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
CommonConsole console
Class org.biomoby.service.dashboard.PerlMoSeSPanel extends AbstractPanel implements Serializable |
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serialVersionUID: 1379466985182986776L
Serialized Fields |
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RegistryModel registryModel
CommonConsole console
JLabel aSelectedCount
JLabel sSelectedCount
JLabel currentlyEditing
JLabel currentPosition
JButton editorSaveButton
JButton editorCloseButton
JButton editorOpenButton
JButton scriptsBtn
JButton generateBtn
boolean enable_moses_actions
boolean is_windows_pc
Icon openFileIcon
Icon openFileIconDis
Icon closeFileIcon
Icon closeFileIconDis
Icon saveFileIcon
Icon saveFileIconDis
Icon zoomInIcon
Icon zoomInIconDis
Icon zoomOutIcon
Icon zoomOutIconDis
JComboBox fonts
String SERVICE_CACHE_DOESNT_EXIST
String DATATYPE_CACHE_DOESNT_EXIST
ActionListener howToListener
Class org.biomoby.service.dashboard.PerlMoSeSSyntaxDocument extends DefaultStyledDocument implements Serializable |
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serialVersionUID: -3430148858039659388L
Serialized Fields |
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DefaultStyledDocument doc
Element rootElement
boolean multiLineComment
MutableAttributeSet normal
MutableAttributeSet keyword
MutableAttributeSet variable
MutableAttributeSet function
MutableAttributeSet comment
MutableAttributeSet quote
HashSet<E> keywords
HashSet<E> functions
HashMap<K,V> token_map
boolean inQuote
Class org.biomoby.service.dashboard.PrimaryDataTable extends CommonDataTable implements Serializable |
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Class org.biomoby.service.dashboard.PrimaryDataTable.PrimaryDataTableModel extends org.biomoby.service.dashboard.CommonDataTable.CommonDataTableModel implements Serializable |
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Class org.biomoby.service.dashboard.PropertyChannel extends Hashtable implements Serializable |
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Serialized Fields |
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PropertyChangeSupport support
Class org.biomoby.service.dashboard.RegistrationDataTypeSubPanel extends RegistrationPanel implements Serializable |
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Serialized Fields |
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BuildDataTypeTree buildTree
org.tulsoft.tools.gui.JTextFieldWithHistory dtName
org.tulsoft.tools.gui.JTextFieldWithHistory dtAuth
org.tulsoft.tools.gui.JTextFieldWithHistory dtEmail
JTextArea dtDescArea
MobyException dtUnregException
org.biomoby.service.dashboard.RegistrationDataTypeSubPanel.CustomDataTypesTree datatypeTree
JButton unregisButton
Class org.biomoby.service.dashboard.RegistrationDataTypeSubPanel.CustomDataTypesTree extends DataTypesTree implements Serializable |
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Class org.biomoby.service.dashboard.RegistrationNamespaceSubPanel extends RegistrationPanel implements Serializable |
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Serialized Fields |
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org.tulsoft.tools.gui.JTextFieldWithHistory nsName
org.tulsoft.tools.gui.JTextFieldWithHistory nsAuth
org.tulsoft.tools.gui.JTextFieldWithHistory nsEmail
JTextArea nsDescArea
JButton unregisButton
org.biomoby.service.dashboard.RegistrationNamespaceSubPanel.CustomNamespacesTree namespacesTree
Class org.biomoby.service.dashboard.RegistrationNamespaceSubPanel.CustomNamespacesTree extends NamespacesTree implements Serializable |
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Class org.biomoby.service.dashboard.RegistrationPanel extends AbstractPanel implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
CommonConsole console
JButton registerButton
JButton showXMLButton
JButton fromXMLButton
JCheckBox copyBySelect
Class org.biomoby.service.dashboard.RegistrationServiceSubPanel extends RegistrationPanel implements Serializable |
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Serialized Fields |
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org.tulsoft.tools.gui.JTextFieldWithHistory sName
org.tulsoft.tools.gui.JTextFieldWithHistory sAuth
org.tulsoft.tools.gui.JTextFieldWithHistory sEmail
org.tulsoft.tools.gui.JTextFieldWithHistory sURL
org.tulsoft.tools.gui.JTextFieldWithHistory sSigURL
JComboBox sCategories
JTextArea sDescArea
JLabel sType
JLabel labelSigURL
JLabel labelRDFPath
org.tulsoft.tools.gui.JFileChooserWithHistory localRDFFile
JCheckBox useAuth
JCheckBox useSignature
JRadioButton rbInputs
JRadioButton rbOutputs
PrimaryDataTable primInTable
PrimaryDataTable primOutTable
SecondaryDataTable secTable
JButton unregisButton
JButton agentButton
Class org.biomoby.service.dashboard.RegistrationServiceSubPanel.CustomDataTypesSimplestTree extends DataTypesTree implements Serializable |
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Class org.biomoby.service.dashboard.RegistrationServiceSubPanel.CustomNamespacesSimplestTree extends NamespacesTree implements Serializable |
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Class org.biomoby.service.dashboard.RegistrationServiceSubPanel.CustomServiceTypesTree2 extends ServiceTypesTree implements Serializable |
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Class org.biomoby.service.dashboard.RegistrationServiceTypeSubPanel extends RegistrationPanel implements Serializable |
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Serialized Fields |
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org.tulsoft.tools.gui.JTextFieldWithHistory stName
org.tulsoft.tools.gui.JTextFieldWithHistory stAuth
org.tulsoft.tools.gui.JTextFieldWithHistory stEmail
JTextArea stDescArea
JLabel stISA
org.biomoby.service.dashboard.RegistrationServiceTypeSubPanel.CustomServiceTypesTree serviceTypeTree
JButton unregisButton
Class org.biomoby.service.dashboard.RegistrationServiceTypeSubPanel.CustomServiceTypesTree extends ServiceTypesTree implements Serializable |
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Class org.biomoby.service.dashboard.RegistryPanel extends AbstractPanel implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
org.tulsoft.tools.gui.JTextFieldWithHistory registryURL
org.tulsoft.tools.gui.JTextFieldWithHistory registryNS
org.tulsoft.tools.gui.JFileChooserWithHistory cacheDir
JLabel labelCacheDir
CommonConsole console
JCheckBox bServices
JCheckBox bDataTypes
JCheckBox bNamespaces
JCheckBox bServiceTypes
JCheckBox bAll
JButton infoButton
JButton updateButton
JButton eraseButton
DataTypesBoard dataTypesBoard
ServiceTypesBoard serviceTypesBoard
NamespacesBoard namespacesBoard
ServicesBoard servicesBoard
Class org.biomoby.service.dashboard.ResultsPanel extends AbstractPanel implements Serializable |
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Serialized Fields |
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ArrayList<E> results
RendererRegistry rendRegistry
JButton detachButton
JButton cleanButton
JButton saveButton
JFileChooser saveChooser
JComboBox viewers
JTabbedPane resultsPane
boolean alreadyReported
Class org.biomoby.service.dashboard.SecondaryDataTable extends CommonDataTable implements Serializable |
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Class org.biomoby.service.dashboard.SecondaryDataTable.SecondaryDataTableModel extends org.biomoby.service.dashboard.CommonDataTable.CommonDataTableModel implements Serializable |
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Class org.biomoby.service.dashboard.ServicesBoard extends CommonBoard implements Serializable |
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Class org.biomoby.service.dashboard.ServicesTree extends CommonTree implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
CommonConsole console
Class org.biomoby.service.dashboard.ServiceTypesBoard extends CommonBoard implements Serializable |
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Class org.biomoby.service.dashboard.ServiceTypesTree extends CommonTree implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
CommonConsole console
Class org.biomoby.service.dashboard.SimpleClientPanel extends AbstractPanel implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
ServiceCallerModel callerModel
JLabel selService
CommonConsole input
org.tulsoft.tools.gui.JFileChooserWithHistory outFile
org.tulsoft.tools.gui.JFileChooserWithHistory inFile
JButton runButton
JButton stopButton
JCheckBox iShowXML
JCheckBox iFromFile
org.tulsoft.tools.gui.JTextFieldWithHistory className
org.tulsoft.tools.gui.JTextFieldWithHistory endpoint
JPanel dataTablesPanel
ServiceInputPanel inputDataTables
org.biomoby.service.dashboard.SimpleClientPanel.MySwingWorker runWorker
ResultsPanel results
JComponent resultsComp
JSplitPane resSplit
boolean selectionAllowed
ActionListener howToListener
Class org.biomoby.service.dashboard.SimpleClientPanel.CustomServicesTree extends ServicesTree implements Serializable |
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Class org.biomoby.service.dashboard.StatisticsPanel extends AbstractPanel implements Serializable |
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Serialized Fields |
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RegistryModel registryModel
JTable table
org.biomoby.service.dashboard.StatisticsPanel.ServiceStatisticsModel ssModel
Class org.biomoby.service.dashboard.TableSorter extends AbstractTableModel implements Serializable |
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Serialized Fields |
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TableModel tableModel
org.biomoby.service.dashboard.TableSorter.Row[] viewToModel
int[] modelToView
JTableHeader tableHeader
MouseListener mouseListener
TableModelListener tableModelListener
Map<K,V> columnComparators
List<E> sortingColumns
Class org.biomoby.service.dashboard.UnitTestingResultPanel extends AbstractPanel implements Serializable |
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serialVersionUID: 198014784585455842L
Serialized Fields |
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ArrayList<E> results
RendererRegistry rendRegistry
JButton cleanButton
JButton saveButton
JFileChooser saveChooser
JComboBox viewers
JTabbedPane resultsPane
boolean alreadyReported
Package org.biomoby.service.dashboard.chooser |
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Class org.biomoby.service.dashboard.chooser.DateTimeChooser extends JPanel implements Serializable |
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Serialized Fields |
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EventListenerList lList
Date initialDate
com.toedter.calendar.JCalendar calendar
com.toedter.components.JSpinField hours
com.toedter.components.JSpinField mins
com.toedter.components.JSpinField secs
JPanel previewPanel
Class org.biomoby.service.dashboard.chooser.DateTimeChooserEditor extends AbstractCellEditor implements Serializable |
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Serialized Fields |
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JButton delegate
Package org.biomoby.service.dashboard.data |
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Class org.biomoby.service.dashboard.data.DataTypeTreeTable extends JTreeTable implements Serializable |
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Class org.biomoby.service.dashboard.data.ParametersTable extends JTable implements Serializable |
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Serialized Fields |
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org.biomoby.service.dashboard.data.ParametersTable.ParametersTableModel tableModel
MobySecondaryData[] paramDefs
Class org.biomoby.service.dashboard.data.ParametersTable.ParametersTableModel extends AbstractTableModel implements Serializable |
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Serialized Fields |
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String[] columnToolTips
String[] columnNames
Class<T>[] columnClasses
MobySecondaryData[] paramDefs
Object[] values
Class org.biomoby.service.dashboard.data.ServiceInputPanel extends JPanel implements Serializable |
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Serialized Fields |
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Vector<E> inputTables
ParametersTable paramsTable
Package org.biomoby.service.dashboard.renderers |
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Class org.biomoby.service.dashboard.renderers.XMLTree extends JTree implements Serializable |
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Serialized Fields |
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int textSizeLimit
org.jdom.Element rootElement
Package org.biomoby.service.dashboard.treetable |
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Class org.biomoby.service.dashboard.treetable.JTreeTable extends JTable implements Serializable |
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Serialized Fields |
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JTreeTable.TreeTableCellRenderer tree
TreeTableModel treeTableModel
Class org.biomoby.service.dashboard.treetable.JTreeTable.TreeTableCellEditor extends AbstractCellEditor implements Serializable |
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Class org.biomoby.service.dashboard.treetable.JTreeTable.TreeTableCellRenderer extends JTree implements Serializable |
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Serialized Fields |
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int visibleRow
Class org.biomoby.service.dashboard.treetable.TreeTableModelAdapter extends AbstractTableModel implements Serializable |
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Serialized Fields |
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JTree tree
TreeTableModel treeTableModel
Package org.biomoby.service.test |
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Class org.biomoby.service.test.ConvertAAtoFASTA_AA extends MobyServlet implements Serializable |
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Class org.biomoby.service.test.FromFastaToDNASequence extends MobyServlet implements Serializable |
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Package org.biomoby.shared |
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Class org.biomoby.shared.MobyException extends Exception implements Serializable |
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serialVersionUID: 3257853190165969203L
Class org.biomoby.shared.MobyResourceRef extends Object implements Serializable |
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Serialized Fields |
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String resourceName
URL location
String contentType
Class org.biomoby.shared.NoSuccessException extends Exception implements Serializable |
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serialVersionUID: 4048790148043127088L
Serialized Fields |
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Object culprit
Class org.biomoby.shared.PendingCurationException extends Exception implements Serializable |
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serialVersionUID: 3256438114472769333L
Class org.biomoby.shared.SOAPException extends RuntimeException implements Serializable |
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serialVersionUID: 3257848770762126647L
Package org.biomoby.shared.data |
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Class org.biomoby.shared.data.MobyDataJob extends HashMap<String,MobyDataInstance> implements Serializable |
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Serialized Fields |
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String id
Class org.biomoby.shared.data.MobyServiceException extends ServiceException implements Serializable |
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Package org.biomoby.shared.event |
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Class org.biomoby.shared.event.NotificationEvent extends EventObject implements Serializable |
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Serialized Fields |
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int type
Object message
Object details
Package org.biomoby.shared.parser |
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Class org.biomoby.shared.parser.ServiceException extends MobyException implements Serializable |
---|
Serialized Fields |
---|
String refQueryID
String refElement
int severity
int code
String description
Package org.biomoby.shared.schema |
---|
Class org.biomoby.shared.schema.Frame extends JFrame implements Serializable |
---|
serialVersionUID: 1939367498077695253L
Package org.inb.biomoby.central |
---|
Class org.inb.biomoby.central.MobyCentral extends AbstractEntity<MobyCentral> implements Serializable |
---|
Serialized Fields |
---|
String endpointURL
String namespace
Package org.inb.biomoby.central.gui |
---|
Class org.inb.biomoby.central.gui.AbstractEntityTreePanel extends JLayeredPane implements Serializable |
---|
Serialized Fields |
---|
JTree tree
JPanel control
DecoratedJScrollPane scroll
Class org.inb.biomoby.central.gui.AbstractMobyDatatypesTreePanel extends AbstractEntityTreePanel implements Serializable |
---|
Class org.inb.biomoby.central.gui.AbstractMobyObjectPropertyTable extends AbstractMobyPropertyTable implements Serializable |
---|
Class org.inb.biomoby.central.gui.AbstractMobyPropertyTable extends JTable implements Serializable |
---|
Class org.inb.biomoby.central.gui.AbstractMobyServicesTreePanel extends AbstractEntityTreePanel implements Serializable |
---|
Class org.inb.biomoby.central.gui.MobyPropertyTable extends AbstractMobyPropertyTable implements Serializable |
---|
Class org.inb.biomoby.central.gui.ObjectTypeAnnotationPanel extends JPanel implements Serializable |
---|
Serialized Fields |
---|
AbstractModel<T> model
ObjectType objectType
JTextField fContactEmail
JTextArea fDescription
Class org.inb.biomoby.central.gui.RegistryComboBox extends JComboBox implements Serializable |
---|
Class org.inb.biomoby.central.gui.RegistryComboBox.RegistryComboBoxRenderer extends DefaultListCellRenderer implements Serializable |
---|
Package org.inb.biomoby.central.gui.dnd |
---|
Class org.inb.biomoby.central.gui.dnd.ObjectTypeTransferHandler extends TransferHandler implements Serializable |
---|
Serialized Fields |
---|
DataFlavor flavor
Package org.inb.biomoby.central.gui.model |
---|
Class org.inb.biomoby.central.gui.model.AbstractEntityTreeNode extends DefaultMutableTreeNode implements Serializable |
---|
Class org.inb.biomoby.central.gui.model.DataTypesTreeModel extends DefaultTreeModel implements Serializable |
---|
Serialized Fields |
---|
List<E> orphans
Class org.inb.biomoby.central.gui.model.MobyObjectPropertiesTableModel extends MobyPropertiesTableModel implements Serializable |
---|
Serialized Fields |
---|
ObjectType objectType
AbstractModel<T> model
Class org.inb.biomoby.central.gui.model.MobyPropertiesTableModel extends AbstractTableModel implements Serializable |
---|
Serialized Fields |
---|
List<E> properties
Class org.inb.biomoby.central.gui.model.RegistryComboBoxModel extends DefaultComboBoxModel implements Serializable |
---|
Class org.inb.biomoby.central.gui.model.ServicesTreeModel extends DefaultTreeModel implements Serializable |
---|
Package org.inb.biomoby.central.gui.renderer |
---|
Class org.inb.biomoby.central.gui.renderer.AbstractCellRenderer extends JLabel implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.AbstractTableCellRenderer extends AbstractCellRenderer implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.AbstractTreeCellRenderer extends AbstractCellRenderer implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.CardinalityTableCellEditor extends AbstractCellEditor implements Serializable |
---|
Serialized Fields |
---|
CardinalityTableCellEditor.CardinalityComponent component
Class org.inb.biomoby.central.gui.renderer.CardinalityTableCellEditor.CardinalityComponent extends JPanel implements Serializable |
---|
Serialized Fields |
---|
JRadioButton hasaButton
JRadioButton hasButton
Class org.inb.biomoby.central.gui.renderer.CardinalityTableCellRenderer extends AbstractTableCellRenderer implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.ClassNameTreeCellEditor extends MobyNameCellEditor implements Serializable |
---|
Serialized Fields |
---|
ClassNameTreeCellEditor.EditorContainer container
ObjectType objectType
Class org.inb.biomoby.central.gui.renderer.ClassNameTreeCellEditor.EditorContainer extends Container implements Serializable |
---|
Serialized Fields |
---|
int offset
Class org.inb.biomoby.central.gui.renderer.EntityTreeCellRenderer extends AbstractTreeCellRenderer implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.MobyNameCellEditor extends DefaultCellEditor implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.ObjectTypeListCellRenderer extends DefaultListCellRenderer implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.ObjectTypeTableCellEditor extends DefaultCellEditor implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.ObjectTypeTableCellEditor.ObjectTypeComboBoxModel extends AbstractListModel implements Serializable |
---|
Serialized Fields |
---|
List<E> objectTypes
Object item
Class org.inb.biomoby.central.gui.renderer.ObjectTypeTableCellRenderer extends PropertyTableCellRenderer implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.PropertyNameTableCellEditor extends MobyNameCellEditor implements Serializable |
---|
Serialized Fields |
---|
ObjectType objectType
Class org.inb.biomoby.central.gui.renderer.PropertyNameTableCellRenderer extends PropertyTableCellRenderer implements Serializable |
---|
Class org.inb.biomoby.central.gui.renderer.PropertyTableCellRenderer extends AbstractTableCellRenderer implements Serializable |
---|
Serialized Fields |
---|
ObjectType objectType
float[] hsb
Package org.inb.biomoby.client.gui |
---|
Class org.inb.biomoby.client.gui.AbstractMobyComponent extends JPanel implements Serializable |
---|
Serialized Fields |
---|
AbstractMobyObject data
Class org.inb.biomoby.client.gui.DefaultMobyComponent extends AbstractMobyComponent<T extends AbstractMobyObject> implements Serializable |
---|
Class org.inb.biomoby.client.gui.DynamicMobyComponent extends AbstractMobyComponent<K extends AbstractMobyObject> implements Serializable |
---|
Serialized Fields |
---|
MobyMessageQueue<T extends IDynamicComponent.MobyComponentListener> queue
Package org.inb.biomoby.client.gui.auxiliary |
---|
Class org.inb.biomoby.client.gui.auxiliary.AbstractAnnotationListPane extends AbstractTransformableMobyPanel<K extends AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Serialized Fields |
---|
Dimension size
List<E> annotations
Map<K,V> visible
Boolean areOverlapped
Class org.inb.biomoby.client.gui.auxiliary.AbstractDescriptionMobyComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
JComponent popup
Class org.inb.biomoby.client.gui.auxiliary.AbstractMultilineDescriptionMobyComponent extends AbstractDescriptionMobyComponent implements Serializable |
---|
Serialized Fields |
---|
Dimension dim
int width
int height
int style
Font font
Class org.inb.biomoby.client.gui.auxiliary.AbstractPopupMobyComponent extends AbstractMobyComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.AbstractTransformableMobyPanel extends DynamicMobyPanel<T extends IDynamicComponent.MobyComponentListener> implements Serializable |
---|
Serialized Fields |
---|
ISequenceCoordinateTransformer transformer
Class org.inb.biomoby.client.gui.auxiliary.AntigenicAnnotationListPane extends LabeledAnnotationListPane<T extends AntigenicAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.ArrayFloatChartPane extends AbstractTransformableMobyPanel<ArrayFloatChartPane.ArrayFloatListener> implements Serializable |
---|
Serialized Fields |
---|
ArrayFloat arrayFloat
Color color
Class org.inb.biomoby.client.gui.auxiliary.AssertedWrapperComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
JLayeredPane layered
JLabel label
AbstractMobyComponent<T extends AbstractMobyObject> component
Class org.inb.biomoby.client.gui.auxiliary.DynamicMobyPanel extends JPanel implements Serializable |
---|
Serialized Fields |
---|
MobyMessageQueue<T extends IDynamicComponent.MobyComponentListener> queue
Class org.inb.biomoby.client.gui.auxiliary.EquicktandemAnnotationListPane extends LabeledAnnotationListPane<T extends EquicktandemAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.FamilyBLOCKAnnotationPane extends LabeledAnnotationListPane<T extends BLOCKAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Serialized Fields |
---|
FamilyBLOCKAnnotation annotations
boolean highlighted
int height
Font font
Class org.inb.biomoby.client.gui.auxiliary.FeatureAnnotationListPane extends LabeledAnnotationListPane<T extends FeatureAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.ImageComponent extends JPanel implements Serializable |
---|
Serialized Fields |
---|
BufferedImage image
Class org.inb.biomoby.client.gui.auxiliary.InterProMotifAnnotationListPane extends ScoredMotifAnnotationListPane<T extends InterProMotifAnnotation> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.JmolPane extends JPanel implements Serializable |
---|
Serialized Fields |
---|
Object viewer
Method renderScreenImage
Method openStringInline
Method scriptWait
Method evalString
Class org.inb.biomoby.client.gui.auxiliary.LabeledAnnotationListPane extends AbstractAnnotationListPane<T extends Annotation,K extends AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Serialized Fields |
---|
int height
Font font
JLabel popup
Class org.inb.biomoby.client.gui.auxiliary.MolWeightAnnotationListPane extends LabeledAnnotationListPane<T extends MolWeightAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.MotifAnnotationListPane extends LabeledAnnotationListPane<T extends MotifAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.MultilineCommentedAASequenceDescriptionPane extends AbstractMultilineDescriptionMobyComponent implements Serializable |
---|
Serialized Fields |
---|
CommentedAASequence sequence
Class org.inb.biomoby.client.gui.auxiliary.MultilineCommentedNASequenceDescriptionMobyComponent extends AbstractMultilineDescriptionMobyComponent implements Serializable |
---|
Serialized Fields |
---|
CommentedNASequence sequence
Class org.inb.biomoby.client.gui.auxiliary.RestrictAnnotationListPane extends LabeledAnnotationListPane<T extends RestrictAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.ScoredMotifAnnotationListPane extends MotifAnnotationListPane<T extends ScoredMotifAnnotation> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.ScrollableTextPane extends JScrollPane implements Serializable |
---|
Serialized Fields |
---|
JTextArea textArea
Class org.inb.biomoby.client.gui.auxiliary.SigcleaveAnnotationListPane extends LabeledAnnotationListPane<T extends SigcleaveAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.StructureBoundariesListPane extends LabeledAnnotationListPane<T extends StructureBoundaries,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.StructureFragmentListPane extends StructureBoundariesListPane<StructureFragment> implements Serializable |
---|
Class org.inb.biomoby.client.gui.auxiliary.TransmembraneAnnotationListPane extends LabeledAnnotationListPane<T extends TransmembraneAnnotation,AbstractAnnotationListPane.AnnotationListListener> implements Serializable |
---|
Package org.inb.biomoby.client.gui.ontology |
---|
Class org.inb.biomoby.client.gui.ontology.AminoAcidSequenceComponent extends GenericSequenceComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.AnnotatedAASequenceComponent extends CommentedAASequenceComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.AnnotatedNASequenceComponent extends CommentedNASequenceComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.AnnotatedStructureComponent extends PDB__TextComponent<T extends AnnotatedStructure> implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.AnnotationComponent extends DynamicMobyComponent implements Serializable |
---|
Serialized Fields |
---|
Annotation annotation
RoundedMultilineLabel label
Class org.inb.biomoby.client.gui.ontology.AnnotationHitsComponent extends DynamicMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotationHits hits
BufferedImage image
int width
int height
Class org.inb.biomoby.client.gui.ontology.AntigenicAnnotatedAASequenceComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
AntigenicAnnotationListPane<T extends AntigenicAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.AntigenicReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotationHitsComponent annotationHitsPanel
AntigenicAnnotatedAASequenceComponent antigenicAnnotatedAASequencePanel
Class org.inb.biomoby.client.gui.ontology.ArrayXYDataComponent extends AbstractPopupMobyComponent implements Serializable |
---|
Serialized Fields |
---|
ArrayXYData data
Set<E> points
ImageComponent popup
double xMin
double xMax
double yMin
double yMax
double width
double height
double titleHeight
double titleWidth
double titleDescent
Font font
Class org.inb.biomoby.client.gui.ontology.BlocksAnnotatedAASequenceComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
List<E> annotations
Class org.inb.biomoby.client.gui.ontology.CommentedAASequenceComponent extends AbstractMobyComponent<T extends CommentedAASequence> implements Serializable |
---|
Serialized Fields |
---|
GenericSequenceComponent<T extends GenericSequence> genericSequencePanel
MultilineCommentedAASequenceDescriptionPane description
Class org.inb.biomoby.client.gui.ontology.CommentedAASubsequenceComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AbstractDescriptionMobyComponent description
GenericSubsequenceComponent genericSubequencePanel
RoundedMultilineLabel label
Class org.inb.biomoby.client.gui.ontology.CommentedNASequenceComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
GenericSequenceComponent<T extends GenericSequence> genericSequencePanel
MultilineCommentedNASequenceDescriptionMobyComponent description
Class org.inb.biomoby.client.gui.ontology.DigestReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotationHitsComponent annotationHitsPanel
MolWeightsAnnotatedAASequenceComponent<T extends MolWeightsAnnotatedAASequence> molWeightsAnnotatedAASequencePanel
Class org.inb.biomoby.client.gui.ontology.EquicktandemAnnotatedNASequenceComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotatedNASequenceComponent annotatedNASequencePanel
EquicktandemAnnotationListPane<T extends EquicktandemAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.EquicktandemReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotationHitsComponent annotationHitsPanel
EquicktandemAnnotatedNASequenceComponent equicktandemAnnotatedNASequencePanel
Class org.inb.biomoby.client.gui.ontology.FeatureAASequenceComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
CommentedAASequenceComponent<T extends CommentedAASequence> commentedAASequencePanel
ArrayFloatChartPane arrayFloatChartPane
Class org.inb.biomoby.client.gui.ontology.FeatureAnnotatedAASequenceComponent extends AbstractMobyComponent<T extends FeatureAnnotatedAASequence> implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
FeatureAnnotationListPane<T extends FeatureAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.FeatureAnnotationComponent extends AnnotationComponent<FeatureAnnotation> implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.GenericSequenceComponent extends DynamicMobyComponent<T extends GenericSequence,GenericSequenceComponent.GenericSequenceListener> implements Serializable |
---|
Serialized Fields |
---|
JPopupMenu popup
GenericSequence sequence
CharSequence characters
ISequenceTransformer transformer
Point mousePoint
MouseEvent lastEvent
Class org.inb.biomoby.client.gui.ontology.GenericSubsequenceComponent extends GenericSequenceComponent implements Serializable |
---|
Serialized Fields |
---|
GenericSubsequenceComponent.GenericSubsequence characters
CommentedAASubsequence sequence
Class org.inb.biomoby.client.gui.ontology.HMMPfam_ReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
HMMPfam_Report report
Class org.inb.biomoby.client.gui.ontology.Image_EncodedComponent extends AbstractDescriptionMobyComponent implements Serializable |
---|
Serialized Fields |
---|
Image_Encoded imageEncoded
BufferedImage image
ImageComponent popup
Class org.inb.biomoby.client.gui.ontology.InterProMotifAnnotatedAASequenceComponent extends AbstractMobyComponent<T extends InterProMotifAnnotatedAASequence> implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
InterProMotifAnnotationListPane<T extends InterProMotifAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.MobyObjectComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
MobyObject object
Class org.inb.biomoby.client.gui.ontology.MolWeightsAnnotatedAASequenceComponent extends AbstractMobyComponent<T extends MolWeightsAnnotatedAASequence> implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
MolWeightAnnotationListPane<T extends MolWeightAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.MotifAnnotatedAASequenceComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
MotifAnnotationListPane<T extends MotifAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.MotifMatrixComponent extends Text__formattedComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.OMIMComponent extends AbstractMobyComponent<T extends OMIM> implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.PatmatdbReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotationHitsComponent annotationHitsPanel
ScoredMotifAnnotatedAASequenceComponent scoredMotifAnnotatedAASequencePanel
Class org.inb.biomoby.client.gui.ontology.PatmatmotifsReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotationHitsComponent annotationHitsPanel
ScoredMotifAnnotatedAASequenceComponent scoredMotifAnnotatedAASequencePanel
Class org.inb.biomoby.client.gui.ontology.PatternComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
Pattern pattern
JTextArea textarea
Class org.inb.biomoby.client.gui.ontology.PDB__TextComponent extends AbstractMobyComponent<T extends PDB__Text> implements Serializable |
---|
Serialized Fields |
---|
JPopupMenu popup
JLayeredPane layered
PDB__Text text
JmolPane jmol
PDB__TextComponent.ScriptTextField script
Class org.inb.biomoby.client.gui.ontology.PDB__TextComponent.ScriptTextField extends JTextField implements Serializable |
---|
Serialized Fields |
---|
Color BACKGROUND_DEFAULT
Class org.inb.biomoby.client.gui.ontology.Pepcoil_TextComponent extends Text__formattedComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.PepinfoReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
PepinfoReport pepinfoReport
FeatureAASequenceComponent aliphatic
FeatureAASequenceComponent positive
FeatureAASequenceComponent negative
FeatureAASequenceComponent tiny
FeatureAASequenceComponent small
FeatureAASequenceComponent polar
FeatureAASequenceComponent non_polar
FeatureAASequenceComponent consensus
FeatureAASequenceComponent aromatic
FeatureAASequenceComponent hydropathy_OHM
FeatureAASequenceComponent hydropathy_KD
FeatureAASequenceComponent charged
Class org.inb.biomoby.client.gui.ontology.Pepstats_TextComponent extends Text__formattedComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.PPSearchReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
JLabel totalHitsLabel
MotifAnnotatedAASequenceComponent motifAnnotatedAASequencePanel
Class org.inb.biomoby.client.gui.ontology.PrositeMotifComponent extends AbstractMobyComponent<T extends PrositeMotif> implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.RestrictAnnotatedNASequenceComponent extends AbstractMobyComponent<T extends RestrictAnnotatedNASequence> implements Serializable |
---|
Serialized Fields |
---|
AnnotatedNASequenceComponent annotatedNASequencePanel
RestrictAnnotationListPane<T extends RestrictAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.RestrictReportComponent extends AbstractMobyComponent<T extends RestrictReport> implements Serializable |
---|
Serialized Fields |
---|
AnnotationHitsComponent annotationHitsPanel
RestrictAnnotatedNASequenceComponent<T extends RestrictAnnotatedNASequence> restrictAnnotatedNASequencePanel
Class org.inb.biomoby.client.gui.ontology.RulesComponent extends AbstractMobyComponent<T extends Rules> implements Serializable |
---|
Serialized Fields |
---|
RoundedMultilineLabel label
Class org.inb.biomoby.client.gui.ontology.ScoredMotifAnnotatedAASequenceComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
ScoredMotifAnnotationListPane<T extends ScoredMotifAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.Sequence_alignment_reportComponent extends Text__formattedComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.SigcleaveAnnotatedAASequenceComponent extends AbstractMobyComponent<T extends SigcleaveAnnotatedAASequence> implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
SigcleaveAnnotationListPane<T extends SigcleaveAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.SigcleaveReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotationHitsComponent annotationHitsPanel
SigcleaveAnnotatedAASequenceComponent<T extends SigcleaveAnnotatedAASequence> sigcleaveAnnotatedAASequencePanel
Class org.inb.biomoby.client.gui.ontology.Stockholm_TextComponent extends Sequence_alignment_reportComponent implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.StructureBoundariesComponent extends AnnotationComponent<StructureBoundaries> implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.StructureDomainComponent extends AbstractMobyComponent<T extends StructureDomain> implements Serializable |
---|
Serialized Fields |
---|
ArrayList<E> segments
int min
int max
int dWidth
Class org.inb.biomoby.client.gui.ontology.StructureFragmentComponent extends AnnotationComponent<StructureFragment> implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.Text__formattedComponent extends Text__plainComponent<T extends Text__formatted> implements Serializable |
---|
Class org.inb.biomoby.client.gui.ontology.Text__plainComponent extends AbstractMobyComponent<T extends Text__plain> implements Serializable |
---|
Serialized Fields |
---|
JTextArea textarea
Class org.inb.biomoby.client.gui.ontology.TransmembraneAnnotatedAASequenceComponent extends AbstractMobyComponent<T extends TransmembraneAnnotatedAASequence> implements Serializable |
---|
Serialized Fields |
---|
AnnotatedAASequenceComponent annotatedAASequencePanel
TransmembraneAnnotationListPane<T extends TransmembraneAnnotation> annotations
Class org.inb.biomoby.client.gui.ontology.TransmembraneReportComponent extends AbstractMobyComponent implements Serializable |
---|
Serialized Fields |
---|
AnnotationHitsComponent annotationHitsPanel
TransmembraneAnnotatedAASequenceComponent<T extends TransmembraneAnnotatedAASequence> transmembraneAnnotatedAASequencePanel
Package org.inb.biomoby.client.gui.swing |
---|
Class org.inb.biomoby.client.gui.swing.CollapsablePanel extends JPanel implements Serializable |
---|
Serialized Fields |
---|
Icon collapse
Icon expand
JButton button
JComponent header
JComponent panel
Class org.inb.biomoby.client.gui.swing.RoundedButton extends JButton implements Serializable |
---|
Serialized Fields |
---|
RoundedBorder border
Class org.inb.biomoby.client.gui.swing.RoundedMultilineLabel extends JLabel implements Serializable |
---|
Serialized Fields |
---|
RoundedBorder border
Package org.inb.biomoby.client.gui.swing.border |
---|
Class org.inb.biomoby.client.gui.swing.border.HeaderBorder extends TitledBorder implements Serializable |
---|
Package org.inb.biomoby.generator.gui |
---|
Class org.inb.biomoby.generator.gui.AbstractServiceModelPanel extends AbstractMobyServicesTreePanel implements Serializable |
---|
Serialized Fields |
---|
LabelButton reloadButton
LabelButton generateButton
String filePath
Class org.inb.biomoby.generator.gui.DatatypesGeneratorPanel extends AbstractMobyDatatypesTreePanel implements Serializable |
---|
Serialized Fields |
---|
LabelButton reloadButton
LabelButton generateButton
Class org.inb.biomoby.generator.gui.Main extends JApplet implements Serializable |
---|
Class org.inb.biomoby.generator.gui.MainPanel extends JPanel implements Serializable |
---|
Serialized Fields |
---|
JComboBox endpoints
StatusBar statusBar
Class org.inb.biomoby.generator.gui.ServiceAccessorGeneratorPanel extends AbstractServiceModelPanel implements Serializable |
---|
Class org.inb.biomoby.generator.gui.ServicesGeneratorPanel extends AbstractServiceModelPanel implements Serializable |
---|
Package org.inb.biomoby.shared.datatypes |
---|
Class org.inb.biomoby.shared.datatypes.MobyBinary extends AbstractMobyObject implements Serializable |
---|
Serialized Fields |
---|
DataHandler handler
Class org.inb.biomoby.shared.datatypes.MobyBoolean extends AbstractMobyObject implements Serializable |
---|
Serialized Fields |
---|
boolean bool
Class org.inb.biomoby.shared.datatypes.MobyDateTime extends AbstractMobyObject implements Serializable |
---|
Serialized Fields |
---|
long time
boolean dirty
GregorianCalendar calendar
Class org.inb.biomoby.shared.datatypes.MobyFloat extends AbstractMobyObject implements Serializable |
---|
Serialized Fields |
---|
double _float
Class org.inb.biomoby.shared.datatypes.MobyInteger extends AbstractMobyObject implements Serializable |
---|
Serialized Fields |
---|
int integer
Class org.inb.biomoby.shared.datatypes.MobyString extends AbstractMobyObject implements Serializable |
---|
Serialized Fields |
---|
String value
Package org.inb.biomoby.shared.message |
---|
Class org.inb.biomoby.shared.message.AbstractMobyElement extends Object implements Serializable |
---|
Serialized Fields |
---|
String articleName
Class org.inb.biomoby.shared.message.AbstractMobyObject extends AbstractMobyElement implements Serializable |
---|
Serialized Fields |
---|
String id
String namespace
Class org.inb.biomoby.shared.message.AnyMobyObject extends MobyObject implements Serializable |
---|
Serialized Fields |
---|
String type
Class org.inb.biomoby.shared.message.CrossReference extends Object implements Serializable |
---|
Serialized Fields |
---|
ArrayList<E> objects
Class org.inb.biomoby.shared.message.MobyCollection extends MobyDataElement implements Serializable |
---|
Serialized Fields |
---|
List<E> list
Class org.inb.biomoby.shared.message.MobyContent extends Object implements Serializable |
---|
Serialized Fields |
---|
ServiceNotes serviceNotes
ArrayList<E> mobyDataList
Class org.inb.biomoby.shared.message.MobyData extends Object implements Serializable |
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Serialized Fields |
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String queryID
List<E> data
ArrayList<E> parameters
Class org.inb.biomoby.shared.message.MobyDataElement extends AbstractMobyElement implements Serializable |
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Class org.inb.biomoby.shared.message.MobyException extends Object implements Serializable |
---|
Serialized Fields |
---|
MobyException.SEVERITY severity
String refQueryID
String refElement
String exceptionCode
String exceptionMessage
Class org.inb.biomoby.shared.message.MobyExceptions extends Exception implements Serializable |
---|
Serialized Fields |
---|
ArrayList<E> exceptions
Class org.inb.biomoby.shared.message.MobyMessage extends Object implements Serializable |
---|
Serialized Fields |
---|
MobyContent mobyContent
Class org.inb.biomoby.shared.message.MobyObject extends AbstractMobyObject implements Serializable |
---|
Serialized Fields |
---|
List<E> attributes
Class org.inb.biomoby.shared.message.MobyParameter extends AbstractMobyElement implements Serializable |
---|
Serialized Fields |
---|
String value
Class org.inb.biomoby.shared.message.MobySimple extends MobyDataElement implements Serializable |
---|
Serialized Fields |
---|
AbstractMobyObject object
Class org.inb.biomoby.shared.message.ServiceNotes extends Object implements Serializable |
---|
Serialized Fields |
---|
String notes
MobyExceptions exceptions
Package org.inb.biomoby.shared.ontology |
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Class org.inb.biomoby.shared.ontology.AminoAcidSequence extends GenericSequence implements Serializable |
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Class org.inb.biomoby.shared.ontology.AnnotatedAASequence extends CommentedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.AnnotatedDomain extends Domain implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.AnnotatedNASequence extends CommentedNASequence implements Serializable |
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Class org.inb.biomoby.shared.ontology.AnnotatedStructure extends PDB__Text implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Annotation extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.AnnotationHits extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.AntigenicAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.AntigenicAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.AntigenicReport extends AntigenicAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Array extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ArrayFloat extends Array implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ArrayInteger extends Array implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ArrayString extends Array implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ArrayXYData extends Array implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.BasicAnnotation extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.BL2GAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.BLAST__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.BLAST_XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.BLOCKAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.BlocksAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ByoDynInput extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ByoDynOEDParameter extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ByoDynTarget extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CATHDomain extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CathDomainDescription_XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Clustalw_Evaluated_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Clustalw_Text extends Sequence_alignment_report implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Clustering extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ClusterProfile_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CodcmpReport_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CodonUsageTable_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CommentedAASequence extends AminoAcidSequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CommentedAASubsequence extends CommentedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CommentedDNASequence extends DNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CommentedNASequence extends NucleotideSequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CommentedObject extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CommentedRNASequence extends RNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CommentedWeightedObject extends CommentedObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Consensus_Sequence_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CpGAnnotatedNASequence extends AnnotatedNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CpGAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.CpGReport extends CpGAnnotatedNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DASGFF extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DCCP_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DGPI_Report extends Text__html implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DifferentialExpressionTest__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DifferentialExpressionTest_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DigestReport extends MolWeightsAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Distance_Matrix extends MatrixFloat implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DNASequence extends NucleotideSequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Domain extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DomainAnnotatedSequence extends CommentedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DSSP_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.DTA_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Element extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ElementFloat extends Element implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ElementInteger extends Element implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ElementString extends Element implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ElementXYData extends Element implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.EMBL_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.EmowseAnnotatedAASequence extends MolWeightsAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ENSEMBLHomolog extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Enzymatic_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.EquicktandemAnnotatedNASequence extends AnnotatedNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.EquicktandemAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.EquicktandemReport extends EquicktandemAnnotatedNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ExpressionCore extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ExpressionStatistics extends ExpressionCore implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FamilyBLOCKAnnotation extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FASTA extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FASTA_AA extends FASTA implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FASTA_AA_multi extends FASTA_AA implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FASTA_NA extends FASTA implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FASTA_NA_multi extends FASTA_NA implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FASTA_pep extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FASTA_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FatiGO__XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FatiGO_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FatiScan__XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FatiScan_Text extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FeatureAASequence extends CommentedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FeatureAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FeatureAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FSOLV_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FSSP_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.FunCUT_Annotation_XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.GenBank_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.GenericSequence extends VirtualSequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.GFF extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.GFF2 extends GFF implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.GFF3 extends GFF implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.GOGraph extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.GOTerm extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.HierarchicalClustering extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.HMM_Text extends Consensus_Sequence_Text implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.HMMPfam_Report extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.HMMSearch_Report extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.HSSP_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Image_Encoded extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.IntAct_XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Interaction extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.InteractionMethod extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Interactor extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.InterProMotifAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.InterProMotifAnnotation extends ScoredMotifAnnotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ISS_Annotation_XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ISS_Report extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.List__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.List_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.LutefiskAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.LutefiskAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.LutefiskReport extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MatchingPattern extends Pattern implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Matrix extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MatrixFloat extends Matrix implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MatrixInteger extends Matrix implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MatrixString extends Matrix implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MEME_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Meta_Alignment_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MicroArrayData__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MicroArrayData_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MmCIF__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MmCIF_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MolWeightAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MolWeightsAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MolWeightsArray extends ArrayFloat implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MotifAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MotifAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MotifMatrix extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MSF extends Sequence_alignment_report implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.MultiParameter extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NAMD_Conf_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NAMD_Output extends NAMD_Structure implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NAMD_Structure extends PDB__Text implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NCBI_BLAST_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NCut_Clusters extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NCut_Matrix extends MatrixFloat implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NCut_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NDB__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Newick__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Newick_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.NucleotideSequence extends GenericSequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.OMIM extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Parameter extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Parameters4Values extends Parameter implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ParametersToVary extends Parameter implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PatmatdbReport extends ScoredMotifAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PatmatmotifsReport extends ScoredMotifAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Pattern extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PDB__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PDB_Enriched extends PDB__Text implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Pepcoil_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PepinfoReport extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PepNovoReport extends ProbMolWeightsAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Pepstats_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PHD_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Phylip_Interleaved_Text extends Phylip_Text implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Phylip_Text extends Sequence_alignment_report implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Phylip_tree_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Phylip_treefile_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PIR_Text extends Sequence_alignment_report implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PMUT_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PPSearchReport extends MotifAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Prediction__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PredictionModel__XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PredictorTraining_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ProbMolWeightAnnotation extends MolWeightAnnotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ProbMolWeightsAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ProdomMotif extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PropertySequence extends GenericSequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PrositeDoc_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PrositeMotif extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.PSF_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.RefSeq_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.RestrictAnnotatedNASequence extends AnnotatedNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.RestrictAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.RestrictReport extends RestrictAnnotatedNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.RNASequence extends NucleotideSequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Rules extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.SCOPDomain extends StructureDomain implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.SCOPLayerNode extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ScoredMotifAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.ScoredMotifAnnotation extends MotifAnnotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Sequence_alignment_report extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.SequenceDescription_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.SIAM_Annotation_XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.SigcleaveAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.SigcleaveAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.SigcleaveReport extends SigcleaveAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Stockholm_Text extends Sequence_alignment_report implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Structure_Alignment_Report extends PDB_Enriched implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.StructureBoundaries extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.StructureDomain extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.StructureFragment extends StructureBoundaries implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.SwissProt_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Target extends Parameter implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TargetArgument extends Parameter implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Text__formatted extends Text__plain implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Text__html extends Text__plain implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Text__plain extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Text__xhtml extends Text__plain implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Text__xml extends Text__plain implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TFscan_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TransmembraneAnnotatedAASequence extends AnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TransmembraneAnnotation extends Annotation implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TransmembraneReport extends TransmembraneAnnotatedAASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TreeDet_Annotation_HTML extends Text__html implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TreeDet_Annotation_XML extends Text__xml implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TreeDet_Report extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.TTS extends CommentedDNASequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Typed_Image extends Image_Encoded implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.URL__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.VirtualSequence extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.WeightedAminoAcidSequences extends AminoAcidSequence implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.WeightedList__Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.WeightedList_Text extends Text__formatted implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.WeightedObject extends MobyObject implements Serializable |
---|
Class org.inb.biomoby.shared.ontology.Zip_Encoded extends MobyObject implements Serializable |
---|
Package org.inb.biomoby.shared.registry |
---|
Class org.inb.biomoby.shared.registry.AbstractEntity extends Object implements Serializable |
---|
Serialized Fields |
---|
String name
String authURI
String contactEmail
String title
String description
String lsid
Class org.inb.biomoby.shared.registry.AbstractTypeEntity extends AbstractEntity<T extends AbstractTypeEntity> implements Serializable |
---|
Class org.inb.biomoby.shared.registry.Collection extends Object implements Serializable |
---|
Serialized Fields |
---|
String articleName
Simple simple
Class org.inb.biomoby.shared.registry.Data extends Object implements Serializable |
---|
Serialized Fields |
---|
ArrayList<E> simples
ArrayList<E> collections
Class org.inb.biomoby.shared.registry.Input extends Data implements Serializable |
---|
Class org.inb.biomoby.shared.registry.Namespace extends AbstractEntity<Namespace> implements Serializable |
---|
Class org.inb.biomoby.shared.registry.ObjectType extends AbstractTypeEntity<ObjectType> implements Serializable |
---|
Serialized Fields |
---|
String articleName
ArrayList<E> relationships
Class org.inb.biomoby.shared.registry.Output extends Data implements Serializable |
---|
Class org.inb.biomoby.shared.registry.Parameter extends Object implements Serializable |
---|
Serialized Fields |
---|
String articleName
Parameter.PARAMETER_TYPE datatype
String description
String _default
String max
String min
ArrayList<E> _enum
Class org.inb.biomoby.shared.registry.Registration extends Object implements Serializable |
---|
Serialized Fields |
---|
Registration.SUCCESS_CODE success
String id
String message
String rdf
Class org.inb.biomoby.shared.registry.Relationship extends Object implements Serializable |
---|
Serialized Fields |
---|
Relationship.RELATIONSHIP_TYPE relationshipType
ArrayList<E> entityTypeList
String lsid
Class org.inb.biomoby.shared.registry.Resource extends Object implements Serializable |
---|
Serialized Fields |
---|
Resource.RESOURCE_NAME name
String url
Class org.inb.biomoby.shared.registry.Service extends AbstractEntity<Service> implements Serializable |
---|
Serialized Fields |
---|
Service.CATEGORY category
ServiceType serviceType
boolean authoritative
String url
String signatureURL
Input input
Output output
ArrayList<E> secondaryArticles
Class org.inb.biomoby.shared.registry.ServiceProvider extends Object implements Serializable |
---|
Serialized Fields |
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String name
Class org.inb.biomoby.shared.registry.ServiceType extends AbstractTypeEntity<ServiceType> implements Serializable |
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Serialized Fields |
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ArrayList<E> relationships
String wsdl
Class org.inb.biomoby.shared.registry.Simple extends Object implements Serializable |
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Serialized Fields |
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String articleName
ObjectType objectType
ArrayList<E> namespaces
Package org.inb.biomoby.shared.wsrf.fault |
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Class org.inb.biomoby.shared.wsrf.fault.InvalidQueryExpressionFault extends Exception implements Serializable |
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Serialized Fields |
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InvalidQueryExpressionFaultType faultInfo
Class org.inb.biomoby.shared.wsrf.fault.InvalidResourcePropertyQNameFault extends Exception implements Serializable |
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Serialized Fields |
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InvalidResourcePropertyQNameFaultType faultInfo
Class org.inb.biomoby.shared.wsrf.fault.QueryEvaluationErrorFault extends Exception implements Serializable |
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Serialized Fields |
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QueryEvaluationErrorFaultType faultInfo
Class org.inb.biomoby.shared.wsrf.fault.ResourceNotDestroyedFault extends Exception implements Serializable |
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Serialized Fields |
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ResourceNotDestroyedFaultType faultInfo
Class org.inb.biomoby.shared.wsrf.fault.ResourceUnavailableFault extends Exception implements Serializable |
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Serialized Fields |
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ResourceUnavailableFaultType faultInfo
Class org.inb.biomoby.shared.wsrf.fault.ResourceUnknownFault extends Exception implements Serializable |
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Serialized Fields |
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ResourceUnknownFaultType faultInfo
Class org.inb.biomoby.shared.wsrf.fault.UnknownQueryExpressionDialectFault extends Exception implements Serializable |
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Serialized Fields |
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UnknownQueryExpressionDialectFaultType faultInfo
Package org.inb.swing |
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Class org.inb.swing.DecoratedJScrollPane extends JScrollPane implements Serializable |
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Serialized Fields |
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BufferedImage logo
Class org.inb.swing.LabelButton extends JLabel implements Serializable |
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Class org.inb.swing.StatusBar extends JPanel implements Serializable |
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Serialized Fields |
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JLabel label
String message
org.inb.swing.StatusBar.LogPanel logPanel
Timer timer
org.inb.swing.StatusBar.Fader fader
Class org.inb.swing.StatusBar.LogPanel extends JPopupMenu implements Serializable |
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Serialized Fields |
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StringBuilder buffer
JEditorPane textPane
JScrollPane scrollPane
Timer timer
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Version: 1.1.1 | |||||||||
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