org.inb.biomoby.shared.message
Class MobyObject

java.lang.Object
  org.inb.biomoby.shared.message.AbstractMobyElement
      org.inb.biomoby.shared.message.AbstractMobyObject
          org.inb.biomoby.shared.message.MobyObject

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

Annotation, AnnotationHits, AnyMobyObject, Array, BasicAnnotation, ByoDynOEDParameter, ByoDynTarget, CATHDomain, Clustering, CommentedObject, Domain, Element, ENSEMBLHomolog, ExpressionCore, FamilyBLOCKAnnotation, GOTerm, HierarchicalClustering, HMMPfam_Report, HMMSearch_Report, Image_Encoded, Interaction, InteractionMethod, Interactor, ISS_Report, LutefiskReport, Matrix, MultiParameter, OMIM, Parameter, Pattern, PepinfoReport, ProdomMotif, PrositeMotif, Rules, SCOPLayerNode, StructureDomain, Text__plain, TreeDet_Report, VirtualSequence, WeightedObject, Zip_Encoded

public class MobyObject
extends AbstractMobyObject
implements Serializable

Author:

Dmitry Repchevsky

See Also:

Serialized Form

Constructor Summary

MobyObject()

MobyObject(String id, String namespace)

Method Summary

List<AbstractMobyObject>	getAttributes() The method returns all elements (has, hasa as well as inherited from parent elements) Usually there is no need to use this method because datatype generated classes suppose to have apropriate getters and setters for their data.
CrossReference	getCrossReference() Return CrossReference block if present
boolean	putAttribute(String articleName, AbstractMobyObject object) The method adds an attribute to the object
void	removeAttribute(String articleName) Remove attribute from a list of attributes
void	removeCrossReference()
void	setCrossReference(CrossReference ref)
String	toString()

Methods inherited from class org.inb.biomoby.shared.message.AbstractMobyObject

getMobyId, getNamespace, setMobyId, setNamespace

Methods inherited from class org.inb.biomoby.shared.message.AbstractMobyElement

getArticleName, setArticleName

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MobyObject

public MobyObject()

MobyObject

public MobyObject(String id,
                  String namespace)

Method Detail

getAttributes

public List<AbstractMobyObject> getAttributes()

The method returns all elements (has, hasa as well as inherited from parent elements) Usually there is no need to use this method because datatype generated classes suppose to have apropriate getters and setters for their data. It could be used in case where there is no datatype tree structure available (for example the got an unknown datatype element).

Returns:

the list of all elements contained by thes object.

putAttribute

public boolean putAttribute(String articleName,
                            AbstractMobyObject object)

The method adds an attribute to the object

Parameters:

articleName - the name of the attribute to be added.

object - the attribute to be added (any moby object)

removeAttribute

public void removeAttribute(String articleName)

Remove attribute from a list of attributes

Parameters:

articleName - the name of an attribute to be removed

getCrossReference

public CrossReference getCrossReference()

Return CrossReference block if present

Returns:

CrossReference object or null if there is no one.

setCrossReference

public void setCrossReference(CrossReference ref)

removeCrossReference

public void removeCrossReference()

toString

public String toString()

Overrides:

toString in class AbstractMobyObject