All Classes

AbstractAnnotationListPane AbstractAnnotationListPane.AnnotationListListener AbstractAsyncMobyImpl AbstractAsyncMobyService AbstractCellRenderer AbstractDescriptionMobyComponent AbstractEntity AbstractEntityTreeNode AbstractEntityTreePanel AbstractMobyComponent AbstractMobyDatatypesTreePanel AbstractMobyElement AbstractMobyHandler AbstractMobyObject AbstractMobyObjectPropertyTable AbstractMobyPropertyTable AbstractMobyRenderer AbstractMobyServicesTreePanel AbstractMobySynchronize AbstractModel AbstractModel AbstractMultilineDescriptionMobyComponent AbstractPanel AbstractPopupMobyComponent AbstractRenderer AbstractServiceModelPanel AbstractTableCellRenderer AbstractTransformableMobyPanel AbstractTreeCellRenderer AbstractTreeTableModel AbstractTypeEntity ACDFile ACDFileTestCase ACDService ACDServiceTestCase AminoAcidSequence AminoAcidSequenceComponent AnalysisEvent AnalysisEvent AnalysisEventTestCase AnnotatedAASequence AnnotatedAASequenceComponent AnnotatedDomain AnnotatedNASequence AnnotatedNASequenceComponent AnnotatedStructure AnnotatedStructureComponent Annotation AnnotationComponent AnnotationHits AnnotationHitsComponent AntigenicAnnotatedAASequence AntigenicAnnotatedAASequenceComponent AntigenicAnnotatedAASequenceComponent.AntigenicAnnotatedAASequenceListener AntigenicAnnotation AntigenicAnnotationListPane AntigenicReport AntigenicReportComponent AntigenicReportComponent.AntigenicReportListener AntModel AnyMobyObject ArgumentListener Array ArrayFloat ArrayFloatChartPane ArrayFloatChartPane.ArrayFloatListener ArrayInteger ArrayString ArrayXYData ArrayXYDataComponent ArrayXYDataComponent.Point AssertedWrapperComponent AsyncClient AsyncClientTestCase Asynchronous Base64 Base64Coder Base64Image BaseClient BaseCmdLineClient BaseFaultType BaseFaultType.Description BaseFaultType.ErrorCode BaseFaultType.FaultCause BaseService BasicAnnotation BL2GAnnotation BLAST__Text BLAST_XML BLOCKAnnotation BlocksAnnotatedAASequence BlocksAnnotatedAASequenceComponent BlocksAnnotatedAASequenceComponent.BlocksAnnotatedAASequenceListener BoxCollectionRenderer BrowserLauncher BuildDataTypeTree Builder ByoDynInput ByoDynOEDParameter ByoDynTarget CacheConfig CardinalityTableCellEditor CardinalityTableCellEditor.CardinalityComponent CardinalityTableCellRenderer CATHDomain CathDomainDescription_XML Central Central CentralAdmin CentralAll CentralCached CentralCachedCallsImpl CentralDataAccess CentralDataAccessImpl CentralDigest CentralDigestCachedImpl CentralDigestCachedSimpleImpl CentralDigestImpl CentralFactory CentralImpl CentralImpl CGIService CGIServiceTestCase CGIServlet CGIUtils ClassNameTreeCellEditor CloseTabIcon Clustalw_Evaluated_Text Clustalw_Text Clustering ClusterProfile_Text CmdLineHelper CodcmpReport_Text CodonUsageTable_Text CollapsablePanel Collection CollectionRenderer CombinedIcon CommentedAASequence CommentedAASequenceComponent CommentedAASequenceComponent.CommentedAASequenceListener CommentedAASubsequence CommentedAASubsequenceComponent CommentedAASubsequenceComponent.CommentedAASubsequenceListener CommentedDNASequence CommentedNASequence CommentedNASequenceComponent CommentedNASequenceComponent.CommentedNASequenceListener CommentedObject CommentedRNASequence CommentedWeightedObject CommonBoard CommonConsole CommonDataTable CommonNode CommonTree CompilerProvider Config Consensus_Sequence_Text ConsoleStream Constants ConvertAAtoFASTA_AA CpGAnnotatedNASequence CpGAnnotation CpGReport CrossReference DaggooClient DaggooClient.Action DASGFF Dashboard DashboardConfig DashboardPanel DashboardProperties Data DataContainer DataFlowRecorder DataImportChoiceDialog DataImportChoiceListener DataRecorder DataRecorderTestCase DataServiceEdge DataTypeConnector DatatypeGenerator DataTypeHandler DataTypeModel DataTypeNode DataTypeParser DataTypesBoard DatatypesGenerationWorker DataTypesGenerator DatatypesGeneratorPanel DatatypesModel DataTypesTree DataTypesTreeModel DataTypeTreeTable DataUtils DateTimeChooser DateTimeChooserEditor DBConnector DC_PROTEGE DCCP_Text DebuggingPanel DecoratedJScrollPane DefaultMobyComponent DefaultOS DeploymentTable DeregisterNamespaceOperation DeregisterNamespaceOperation.DeregisterNamespace DeregisterObjectClassOperation DeregisterObjectClassOperation.DeregisterObjectClass DeregisterServiceOperation DeregisterServiceOperation.DeregisterService DeregisterServiceTypeOperation DeregisterServiceTypeOperation.DeregisterServiceType DescriptiveFileFilter DGPI_Report DifferentialExpressionTest__Text DifferentialExpressionTest_Text DigestReport DigestReportComponent DigestReportComponent.DigestReportListener Distance_Matrix DNASequence Domain DomainAnnotatedSequence DSSP_Text DTA_Text DummyMobyObjectFactory DynamicJPopupMenu DynamicMobyComponent DynamicMobyPanel Element ElementFloat ElementInteger ElementString ElementXYData EMBL_Text EmowseAnnotatedAASequence EndpointReference EndpointReferenceParser ENSEMBLHomolog EntityTreeCellRenderer Environment Enzymatic_Text EprTags EquicktandemAnnotatedNASequence EquicktandemAnnotatedNASequenceComponent EquicktandemAnnotatedNASequenceComponent.EquicktandemAnnotatedNASequenceListener EquicktandemAnnotation EquicktandemAnnotationListPane EquicktandemReport EquicktandemReportComponent EquicktandemReportComponent.EquicktandemReportListener Event EventParser ExampleList ExamplePanel ExitSecurityManager ExpressionCore ExpressionStatistics ExtendedProtocolClient ExtendedServiceLocator FamilyBLOCKAnnotation FamilyBLOCKAnnotationPane FASTA FASTA_AA FASTA_AA_multi FASTA_NA FASTA_NA_multi FASTA_pep FASTA_Text FatiGO__XML FatiGO_Text FatiScan__XML FatiScan_Text FaultTags FeatureAASequence FeatureAASequenceComponent FeatureAASequenceComponent.FeatureAASequenceListener FeatureAnnotatedAASequence FeatureAnnotatedAASequenceComponent FeatureAnnotatedAASequenceComponent.FeatureAnnotatedAASequenceListener FeatureAnnotation FeatureAnnotationComponent FeatureAnnotationListPane FeatureClient FeatureClient.JobIdentifier FeatureClientException FeatureClientResult FeatureClientUtility FetaVocabulary FileAndTextTransferHandler FileCache FilterDataTypes FilteredStream FilterRuleKeys FilterSearch FilterSearchWidget FilterServices FindServiceOperation FindServiceOperation.FindService FindServiceOperation.FindService.Collection FindServiceOperation.FindService.Input FindServiceOperation.FindService.InputObjects FindServiceOperation.FindService.Output FindServiceOperation.FindService.OutputObjects FindServiceOperation.FindService.Simple FindServiceOperation.Services FindServiceOperation.Services.Collection FindServiceOperation.Services.Data FindServiceOperation.Services.Input FindServiceOperation.Services.Namespace FindServiceOperation.Services.ObjectType FindServiceOperation.Services.Output FindServiceOperation.Services.Parameter FindServiceOperation.Services.SecondaryArticles FindServiceOperation.Services.Service FindServiceOperation.Services.ServiceType FindServiceOperation.Services.Simple Frame FromFastaToDNASequence FSOLV_Text FSSP_Text FunCUT_Annotation_XML GenBank_Text Generator GeneratorPanel GeneratorUtil GenericSequence GenericSequenceComponent GenericSequenceComponent.GenericSequenceListener GenericSubsequenceComponent GenericWindowListener GetMultipleResourceProperties GetMultipleResourcePropertiesResponse GetResourcePropertyResponse GFF GFF2 GFF3 GOGraph GOTerm GraphColours GraphsServlet Graphviz HeaderBorder HeaderBorder.EmptyBorder HeartBeatEvent HeartbeatProgress HierarchicalClustering HMM_Text HMMPfam_Report HMMPfam_ReportComponent HMMSearch_Report HRBorder HSSP_Text HTMLUtils IAsyncMobyImpl IAsyncMobyService ICISPedigreeTree IDynamicComponent IDynamicComponent.MobyComponentListener Image_Encoded Image_EncodedComponent ImageComponent ImageLoader IMobyCentralCache Input IntAct_XML Interaction InteractionMethod Interactor InterProMotifAnnotatedAASequence InterProMotifAnnotatedAASequenceComponent InterProMotifAnnotatedAASequenceComponent.InterProMotifAnnotatedAASequenceListener InterProMotifAnnotation InterProMotifAnnotationListPane InvalidQueryExpressionFault InvalidQueryExpressionFaultType InvalidResourcePropertyQNameFault InvalidResourcePropertyQNameFaultType IOUtils ISequenceCoordinateTransformer ISequenceDependent ISequenceTransformer ISS_Annotation_XML ISS_Report IterativeMatchResult ITransformable JAXBMobyCentralImpl JDOMUtils JmolPane JNamespaceI JNamespacesSqlImpl JObjectsI JObjectsSqlImpl JProgressBarWithCancel JServiceI JServicesSqlImpl JTreeTable LabelButton LabeledAnnotationListPane LegacyService LegacyServiceTestCase List__Text List_Text Log LogListener LookAndFeelUtils LsaeTags LSIDAccessible LSIDResolver LSIDResolverTestCase LutefiskAnnotatedAASequence LutefiskAnnotation LutefiskReport MacOS Mailer Main Main MainGUI MainPanel MapDataTypesIfc MapPrimitiveDataTypes MatchingPattern Matrix MatrixFloat MatrixInteger MatrixString MElement MElementHashtable MEME_Text MemoryFileManager MemoryFileManager.JavaSourceFromString Meta_Alignment_Text MicroArrayData__Text MicroArrayData_Text MinJarMaker MmCIF__Text MmCIF_Text MobyBinary MobyBoolean MobyBoolean MobyCentral MobyCentralConfig MobyCentralFactory MobyCentralFileCache MobyCentralModel MobyCentralOperations MobyCentralService MobyCentralServiceImpl MobyClassLoader MobyClient MobyClientTestCase MobyCollection MobyCollection MobyComplexBuilder MobyComponentFactory MobyContent MobyContentClipboard MobyContentCreator MobyContentGUI MobyContentGUITestCase MobyContentHelpPane MobyContentInstance MobyContentPane MobyContentProducer MobyData MobyData MobyDataBoolean MobyDataBytes MobyDataComposite MobyDataDateTime MobyDataDateTimeTestCase MobyDataElement MobyDataElement MobyDataFloat MobyDataInstance MobyDataInt MobyDataJob MobyDataObject MobyDataObjectDeferred MobyDataObjectDeferredSAI MobyDataObjectSAI MobyDataObjectSet MobyDataObjectSetDeferred MobyDataObjectSetDeferredSAI MobyDataObjectSetSAI MobyDataObjectVector MobyDataObjectWidget MobyDataSecondaryInstance MobyDataServiceAssocInstance MobyDataString MobyDataTransferable MobyDataType MobyDataTypeTemplate MobyDataUtils MobyDataXref MobyDateTime MobyDateTime MobyDispatch MobyDispatch.MobyWSRFResource MobyEndpointReference MobyException MobyException MobyException.SEVERITY MobyExceptions MobyFloat MobyFloat MobyHandler MobyInteger MobyInteger MobyJob MobyMessage MobyMessageContext MobyMessageQueue MobyNameCellEditor MobyNamespace MobyNamespaceTestCase MobyObject MobyObject MobyObjectComponent MobyObjectDecomposition MobyObjectDecompositionImpl MobyObjectPropertiesTableModel MobyObjectReceiver MobyObjectTransferHandler MobyPackage MobyParameter MobyParameter MobyParser MobyPayloadCreator MobyPayloadRequestListener MobyPrefixResolver MobyPrefixResolver.MobyNodeList MobyPrimaryData MobyPrimaryDataSet MobyPrimaryDataSimple MobyPrimitive MobyProperties MobyPropertiesTableModel MobyPropertyTable MobyProvider MobyProvisionInfo MobyRegistration MobyRegistryEndpoint MobyRelationship MobyRequest MobyRequestEvent MobyRequestEventHandler MobyResourceRef MobyResources MobySaveDialog MobySecondaryData MobySecondaryInputGUI MobySecondaryLogging mobyService MobyService MobyServiceComparator MobyServiceException MobyServiceLocator MobyServicesGUI MobyServiceType MobyServlet MobyServletTestCase MobyShimmer MobySimple MobySimple MobySpecWrapper MobyString MobyString MobySyncExecuter MobySynchronize MobySynchronizeImpl MobyTags MobyUnitTest MobyUnitTestingPanel MobyUtils MobyWSRFScope MobyWSRFScopeFeature MobyXref ModelConverter ModelListener MolWeightAnnotation MolWeightAnnotationListPane MolWeightsAnnotatedAASequence MolWeightsAnnotatedAASequenceComponent MolWeightsAnnotatedAASequenceComponent.MolWeightsAnnotatedAASequenceListener MolWeightsArray MotifAnnotatedAASequence MotifAnnotatedAASequenceComponent MotifAnnotatedAASequenceComponent.MotifAnnotatedAASequenceListener MotifAnnotation MotifAnnotationListPane MotifMatrix MotifMatrixComponent MSF MultilineCommentedAASequenceDescriptionPane MultilineCommentedNASequenceDescriptionMobyComponent MultiParameter MultiPartFormOutputStream MutableNodeList NAMD_Conf_Text NAMD_Output NAMD_Structure Namespace NamespaceContextImpl NamespaceHandler NamespaceParser NamespacesBoard NamespacesModel NamespacesTree NCBI_BLAST_Text NCut_Clusters NCut_Matrix NCut_Text NDB__Text Newick__Text Newick_Text NoSuccessException NotificationEvent NotificationListener Notifier NucleotideSequence NullIcon ObjectType ObjectTypeAnnotationPanel ObjectTypeListCellRenderer ObjectTypeTableCellEditor ObjectTypeTableCellEditor.ObjectTypeComboBoxModel ObjectTypeTableCellRenderer ObjectTypeTransferable ObjectTypeTransferHandler OMIM OMIMComponent Output Parameter Parameter Parameter.PARAMETER_TYPE Parameters4Values ParametersTable ParametersToVary PatmatdbReport PatmatdbReportComponent PatmatdbReportComponent.PatmatdbReportListener PatmatmotifsReport PatmatmotifsReportComponent PatmatmotifsReportComponent.PatmatmotifsReportListener Pattern PatternComponent PBERecorder PDB__Text PDB__TextComponent PDB_Enriched PendingCurationException Pepcoil_Text Pepcoil_TextComponent PepinfoReport PepinfoReportComponent PepinfoReportComponent.PepinfoReportListener PepNovoReport Pepstats_Text Pepstats_TextComponent PercentEvent PercentProgress PerlMoSeSPanel PerlMoSeSSyntaxDocument PHD_Text Phylip_Interleaved_Text Phylip_Text Phylip_tree_Text Phylip_treefile_Text PIR_Text PlainMobyText PlainText PMUT_Text PPSearchReport PPSearchReportComponent PPSearchReportComponent.PPSearchReportListener Predicates Prediction__Text PredictionModel__XML PredictorTraining_Text PrimaryDataTable PrimitiveTypes PrimitiveVector PrintableJEditorPane ProbMolWeightAnnotation ProbMolWeightsAnnotatedAASequence Processor ProdomMotif PropertyChannel PropertyNameTableCellEditor PropertyNameTableCellRenderer PropertyResponseWrapper PropertySequence PropertyTableCellRenderer PrositeDoc_Text PrositeMotif PrositeMotifComponent PSF_Text QueryEvaluationErrorFault QueryEvaluationErrorFaultType QueryExpressionType QueryResourceProperties QueryResourcePropertiesResponse RDF RDFAgentTestSuite RdfParser RefSeq_Text RegExDocumentFilter RegexParser RegexParserTestCase RegisterNamespaceOperation RegisterNamespaceOperation.RegisterNamespace RegisterObjectClassOperation RegisterObjectClassOperation.ObjectType RegisterObjectClassOperation.RegisterObjectClass RegisterObjectClassOperation.Relationship RegisterServiceOperation RegisterServiceOperation.Collection RegisterServiceOperation.Input RegisterServiceOperation.Output RegisterServiceOperation.Parameter RegisterServiceOperation.RegisterService RegisterServiceOperation.SecondaryArticles RegisterServiceOperation.Simple RegisterServiceTypeOperation RegisterServiceTypeOperation.RegisterServiceType RegisterServiceTypeOperation.Relationship RegisterServiceTypeOperation.ServiceType Registration Registration Registration.SUCCESS_CODE RegistrationDataTypeSubPanel RegistrationNamespaceSubPanel RegistrationPanel RegistrationServiceSubPanel RegistrationServiceTypeSubPanel Registries RegistriesList Registry Registry RegistryCache RegistryComboBox RegistryComboBox.RegistryComboBoxRenderer RegistryComboBoxModel RegistryImpl RegistryModel RegistryOS RegistryPanel Relationship Relationship.DIRECTION_TYPE Relationship.RELATIONSHIP_TYPE RelationshipsOperation RelationshipsOperation.AbstractType RelationshipsOperation.ObjectType RelationshipsOperation.Relationship RelationshipsOperation.RelationshipsInput RelationshipsOperation.RelationshipsOutput RelationshipsOperation.ServiceType Renderer RendererRegistry Report Resource Resource.RESOURCE_NAME ResourceNotDestroyedFault ResourceNotDestroyedFaultType ResourceUnavailableFault ResourceUnavailableFaultType ResourceUnknownFault ResourceUnknownFaultType RestrictAnnotatedNASequence RestrictAnnotatedNASequenceComponent RestrictAnnotatedNASequenceComponent.RestrictAnnotatedNASequenceListener RestrictAnnotation RestrictAnnotationListPane RestrictReport RestrictReportComponent RestrictReportComponent.RestrictReportListener ResultsPanel RetrieveNamespacesOperation RetrieveNamespacesOperation.Namespace RetrieveNamespacesOperation.Namespaces RetrieveObjectDefinitionOperation RetrieveObjectDefinitionOperation.ObjectType RetrieveObjectDefinitionOperation.Relationship RetrieveObjectDefinitionOperation.RetrieveObjectDefinition RetrieveObjectNamesOperation RetrieveObjectNamesOperation.Object RetrieveObjectNamesOperation.ObjectNames RetrieveObjectOperation RetrieveObjectOperation.Object RetrieveObjectOperation.RetrieveObjectSchema RetrieveResourceURLsOperation RetrieveResourceURLsOperation.Resource RetrieveResourceURLsOperation.ResourceURLs RetrieveServiceNamesOperation RetrieveServiceNamesOperation.ServiceName RetrieveServiceNamesOperation.ServiceNames RetrieveServiceOperation RetrieveServiceOperation.RetrieveService RetrieveServiceOperation.ServiceTemplate RetrieveServiceProvidersOperation RetrieveServiceProvidersOperation.ServiceProvider RetrieveServiceProvidersOperation.ServiceProviders RetrieveServiceTypesOperation RetrieveServiceTypesOperation.ServiceType RetrieveServiceTypesOperation.ServiceTypes RNASequence RoundedBorder RoundedButton RoundedMultilineLabel RuleCreator Rules RulesComponent SCOPDomain SCOPLayerNode ScoredMotifAnnotatedAASequence ScoredMotifAnnotatedAASequenceComponent ScoredMotifAnnotatedAASequenceComponent.ScoredMotifAnnotatedAASequenceListener ScoredMotifAnnotation ScoredMotifAnnotationListPane ScrollableTextPane SeahawkOptions SeahawkOptionsGUI SeahawkSplasher SeahawkTestCase SeahawkTransferable SecondaryDataTable Sequence Sequence_alignment_report Sequence_alignment_reportComponent SequenceDescription_Text SequenceTransformerBean Service Service.CATEGORY ServiceAccessorGenerationWorker ServiceAccessorGenerator ServiceAccessorGeneratorPanel ServiceCallerModel ServiceChoiceListener ServiceConnections ServiceDescriptionPredicates ServiceException ServiceFilter ServiceGenerator ServiceHandler ServiceInputPanel ServiceInstanceParser ServiceInstanceRDF ServiceInstanceWSDL ServiceLoader ServiceNotes ServiceProvider ServiceProvider ServicesBoard ServiceSearchDialog ServicesEdge ServicesGenerationWorker ServicesGenerator ServicesGeneratorPanel ServicesModel ServicesTree ServicesTreeModel ServiceType ServiceTypeHandler ServiceTypeParser ServiceTypesBoard ServiceTypesTree ServletFileCache ServletTester SIAM_Annotation_XML SigcleaveAnnotatedAASequence SigcleaveAnnotatedAASequenceComponent SigcleaveAnnotatedAASequenceComponent.SigcleaveAnnotatedAASequenceListener SigcleaveAnnotation SigcleaveAnnotationListPane SigcleaveReport SigcleaveReportComponent SigcleaveReportComponent.SigcleaveReportListener SignatureURLConnection Simple SimpleAnt SimpleCache SimpleClientPanel SimpleFileCache SimpleListener SingletonApplication SOAPException SOAPFault SOAPFaultParser SOAPFaultTestCase SoapServlet SoapServletTestCase SourceMap SplashScreenStatus SplashWindow SplashWindow StateChanged StateChanged.STATE StateEvent StatisticsPanel StatusBar StatusBarHandler StepEvent StepProgress Stockholm_Text Stockholm_TextComponent StringBufferServletOutputStream StringPainter StringPainter.ALIGNMENT Structure_Alignment_Report StructureBoundaries StructureBoundariesComponent StructureBoundariesListPane StructureDomain StructureDomainComponent StructureFragment StructureFragmentComponent StructureFragmentListPane SubmitResponseWrapper SubmitResponseWrapper.Body Subsequence SwingWorker SwissProt_Text TabCollectionRenderer TableSorter Target TargetArgument Taverna TempDir TemplateFilter TemplateInputStream TestException TestHttpServletRequest TestHttpServletResponse TestServletConfig TestServletContext TEX2HTML Text__formatted Text__formattedComponent Text__html Text__plain Text__plainComponent Text__xhtml Text__xml TextClient TextClientTestCase TFscan_Text TimeProgress TimeProgressEvent TransmembraneAnnotatedAASequence TransmembraneAnnotatedAASequenceComponent TransmembraneAnnotatedAASequenceComponent.TransmembraneAnnotatedAASequenceListener TransmembraneAnnotation TransmembraneAnnotationListPane TransmembraneReport TransmembraneReportComponent TransmembraneReportComponent.TransmembraneReportListener TreeDet_Annotation_HTML TreeDet_Annotation_XML TreeDet_Report TreeTableModel TreeTableModelAdapter TTS Typed_Image UnitTestingResultPanel UnitTestingServiceCallermodel UNIX UnknownQueryExpressionDialectFault UnknownQueryExpressionDialectFaultType URL__Text Utils VirtualSequence WeightedAminoAcidSequences WeightedList__Text WeightedList_Text WeightedObject Windows WindowsNT WorkflowPreviewDialog WorkflowPreviewListener WrapperService WrappingServlet WrappingServlet.MyNodeList WSDLConfig WSDLConfigTestCase WSDLService WSDLServiceTestCase WSRFFault WSRFOperation WSRFResourceInstanceResolver XHTMLForm XHTMLFormTestCase XMLTree XMLTreeRenderer XMLTypes XPathOption XPointerResolver Zip_Encoded