org.inb.biomoby.client.gui.ontology
Class MotifAnnotatedAASequenceComponent

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.inb.biomoby.client.gui.AbstractMobyComponent
                      org.inb.biomoby.client.gui.ontology.MotifAnnotatedAASequenceComponent

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible, AbstractAnnotationListPane.AnnotationListListener, IDynamicComponent<MotifAnnotatedAASequenceComponent.MotifAnnotatedAASequenceListener>, IDynamicComponent.MobyComponentListener, ISequenceDependent, ITransformable, CommentedAASequenceComponent.CommentedAASequenceListener, GenericSequenceComponent.GenericSequenceListener

public class MotifAnnotatedAASequenceComponent
extends AbstractMobyComponent
implements IDynamicComponent<MotifAnnotatedAASequenceComponent.MotifAnnotatedAASequenceListener>, ISequenceDependent, ITransformable, CommentedAASequenceComponent.CommentedAASequenceListener, AbstractAnnotationListPane.AnnotationListListener

Author:

Dmitry Repchevsky

See Also:

Serialized Form

Nested Class Summary

static interface

MotifAnnotatedAASequenceComponent.MotifAnnotatedAASequenceListener

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Component

Component.BaselineResizeBehavior

Nested classes/interfaces inherited from interface org.inb.biomoby.client.gui.IDynamicComponent

IDynamicComponent.MobyComponentListener

Field Summary

Fields inherited from class javax.swing.JComponent

TOOL_TIP_TEXT_KEY, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

MotifAnnotatedAASequenceComponent()

MotifAnnotatedAASequenceComponent(MotifAnnotatedAASequence sequence)

Method Summary

void	addListener(IDynamicComponent.MobyComponentListener listener)
void	annotationsSelected(List<? extends Annotation> annotations)
MotifAnnotatedAASequence	getData()
Dimension	getMaximumSize()
ISequenceCoordinateTransformer	getTransformer()
void	positionChanged(int pos)
void	removeListener(IDynamicComponent.MobyComponentListener listener)
void	setPosition(int position)
void	setSequenceVisible(boolean isVisible)
void	setTransformer(ISequenceCoordinateTransformer transformer)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintImmediately, paintImmediately, print, printAll, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, createImage, createImage, createVolatileImage, createVolatileImage, dispatchEvent, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MotifAnnotatedAASequenceComponent

public MotifAnnotatedAASequenceComponent()

MotifAnnotatedAASequenceComponent

public MotifAnnotatedAASequenceComponent(MotifAnnotatedAASequence sequence)

Method Detail

getData

public MotifAnnotatedAASequence getData()

Overrides:

getData in class AbstractMobyComponent

setPosition

public void setPosition(int position)

Specified by:

setPosition in interface ISequenceDependent

setSequenceVisible

public void setSequenceVisible(boolean isVisible)

Specified by:

setSequenceVisible in interface ISequenceDependent

setTransformer

public void setTransformer(ISequenceCoordinateTransformer transformer)

Specified by:

setTransformer in interface ITransformable

getTransformer

public ISequenceCoordinateTransformer getTransformer()

Specified by:

getTransformer in interface ITransformable

positionChanged

public void positionChanged(int pos)

Specified by:

positionChanged in interface GenericSequenceComponent.GenericSequenceListener

annotationsSelected

public void annotationsSelected(List<? extends Annotation> annotations)

Specified by:

annotationsSelected in interface AbstractAnnotationListPane.AnnotationListListener

getMaximumSize

public Dimension getMaximumSize()

Overrides:

getMaximumSize in class JComponent

addListener

public void addListener(IDynamicComponent.MobyComponentListener listener)

Specified by:

addListener in interface IDynamicComponent<MotifAnnotatedAASequenceComponent.MotifAnnotatedAASequenceListener>

removeListener

public void removeListener(IDynamicComponent.MobyComponentListener listener)

Specified by:

removeListener in interface IDynamicComponent<MotifAnnotatedAASequenceComponent.MotifAnnotatedAASequenceListener>