org.inb.biomoby.client.gui.ontology
Class GenericSequenceComponent<T extends GenericSequence>

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.inb.biomoby.client.gui.AbstractMobyComponent<K>
                      org.inb.biomoby.client.gui.DynamicMobyComponent<T,GenericSequenceComponent.GenericSequenceListener>
                          org.inb.biomoby.client.gui.ontology.GenericSequenceComponent<T>

All Implemented Interfaces:

ClipboardOwner, ActionListener, MouseListener, MouseMotionListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, DocumentListener, IDynamicComponent<GenericSequenceComponent.GenericSequenceListener>, ISequenceDependent, ITransformable

Direct Known Subclasses:

AminoAcidSequenceComponent, GenericSubsequenceComponent

public class GenericSequenceComponent<T extends GenericSequence>
extends DynamicMobyComponent<T,GenericSequenceComponent.GenericSequenceListener>
implements ISequenceDependent, ITransformable, DocumentListener, ActionListener, MouseMotionListener, MouseListener, ClipboardOwner

Author:

Dmitry Repchevsky

See Also:

Serialized Form

Nested Class Summary

static interface

GenericSequenceComponent.GenericSequenceListener

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Component

Component.BaselineResizeBehavior

Nested classes/interfaces inherited from interface org.inb.biomoby.client.gui.IDynamicComponent

IDynamicComponent.MobyComponentListener

Field Summary

Fields inherited from class javax.swing.JComponent

TOOL_TIP_TEXT_KEY, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

GenericSequenceComponent()

GenericSequenceComponent(T sequence)

Method Summary

void	actionPerformed(ActionEvent e)
void	changedUpdate(DocumentEvent e)
CharSequence	getCharSequence()
Color	getColor(char ch)
Dimension	getMaximumSize()
int	getPosition()
Dimension	getPreferredSize()
ISequenceTransformer	getTransformer()
void	insertUpdate(DocumentEvent e)
void	lostOwnership(Clipboard clipboard, Transferable contents)
static void	main(String[] args)
void	mouseClicked(MouseEvent e)
void	mouseDragged(MouseEvent e)
void	mouseEntered(MouseEvent e)
void	mouseExited(MouseEvent e)
void	mouseMoved(MouseEvent e)
void	mousePressed(MouseEvent e)
void	mouseReleased(MouseEvent e)
void	paintComponent(Graphics g)
void	removeUpdate(DocumentEvent e)
void	setPosition(int position)
void	setSequence(GenericSequence sequence)
void	setSequenceVisible(boolean isVisible)
void	setTransformer(ISequenceCoordinateTransformer transformer)

Methods inherited from class org.inb.biomoby.client.gui.DynamicMobyComponent

addListener, getListeners, removeListener

Methods inherited from class org.inb.biomoby.client.gui.AbstractMobyComponent

getData

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintImmediately, paintImmediately, print, printAll, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, createImage, createImage, createVolatileImage, createVolatileImage, dispatchEvent, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GenericSequenceComponent

public GenericSequenceComponent()

GenericSequenceComponent

public GenericSequenceComponent(T sequence)

Method Detail

getCharSequence

public CharSequence getCharSequence()

getTransformer

public ISequenceTransformer getTransformer()

Specified by:

getTransformer in interface ITransformable

setTransformer

public void setTransformer(ISequenceCoordinateTransformer transformer)

Specified by:

setTransformer in interface ITransformable

setSequence

public void setSequence(GenericSequence sequence)

getPosition

public int getPosition()

setPosition

public void setPosition(int position)

Specified by:

setPosition in interface ISequenceDependent

setSequenceVisible

public void setSequenceVisible(boolean isVisible)

Specified by:

setSequenceVisible in interface ISequenceDependent

getColor

public Color getColor(char ch)

paintComponent

public void paintComponent(Graphics g)

Overrides:

paintComponent in class JComponent

getPreferredSize

public Dimension getPreferredSize()

Overrides:

getPreferredSize in class JComponent

getMaximumSize

public Dimension getMaximumSize()

Overrides:

getMaximumSize in class JComponent

actionPerformed

public void actionPerformed(ActionEvent e)

Specified by:

actionPerformed in interface ActionListener

mouseDragged

public void mouseDragged(MouseEvent e)

Specified by:

mouseDragged in interface MouseMotionListener

mouseMoved

public void mouseMoved(MouseEvent e)

Specified by:

mouseMoved in interface MouseMotionListener

mouseClicked

public void mouseClicked(MouseEvent e)

Specified by:

mouseClicked in interface MouseListener

mousePressed

public void mousePressed(MouseEvent e)

Specified by:

mousePressed in interface MouseListener

mouseReleased

public void mouseReleased(MouseEvent e)

Specified by:

mouseReleased in interface MouseListener

mouseEntered

public void mouseEntered(MouseEvent e)

Specified by:

mouseEntered in interface MouseListener

mouseExited

public void mouseExited(MouseEvent e)

Specified by:

mouseExited in interface MouseListener

insertUpdate

public void insertUpdate(DocumentEvent e)

Specified by:

insertUpdate in interface DocumentListener

removeUpdate

public void removeUpdate(DocumentEvent e)

Specified by:

removeUpdate in interface DocumentListener

changedUpdate

public void changedUpdate(DocumentEvent e)

Specified by:

changedUpdate in interface DocumentListener

lostOwnership

public void lostOwnership(Clipboard clipboard,
                          Transferable contents)

Specified by:

lostOwnership in interface ClipboardOwner

main

public static void main(String[] args)