org.inb.biomoby.shared.ontology
Class ScoredMotifAnnotatedAASequence

java.lang.Object
  org.inb.biomoby.shared.message.AbstractMobyElement
      org.inb.biomoby.shared.message.AbstractMobyObject
          org.inb.biomoby.shared.message.MobyObject
              org.inb.biomoby.shared.ontology.VirtualSequence
                  org.inb.biomoby.shared.ontology.GenericSequence
                      org.inb.biomoby.shared.ontology.AminoAcidSequence
                          org.inb.biomoby.shared.ontology.CommentedAASequence
                              org.inb.biomoby.shared.ontology.AnnotatedAASequence
                                  org.inb.biomoby.shared.ontology.ScoredMotifAnnotatedAASequence

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

PatmatdbReport, PatmatmotifsReport

public class ScoredMotifAnnotatedAASequence
extends AnnotatedAASequence
implements Serializable

See Also:

Serialized Form

Constructor Summary

ScoredMotifAnnotatedAASequence()

Method Summary

void	addAnnotations(ScoredMotifAnnotation annotations)
List<? extends ScoredMotifAnnotation>	getAnnotations()

Methods inherited from class org.inb.biomoby.shared.ontology.CommentedAASequence

getDescription, setDescription

Methods inherited from class org.inb.biomoby.shared.ontology.GenericSequence

getSequenceString, setSequenceString

Methods inherited from class org.inb.biomoby.shared.ontology.VirtualSequence

getLength, setLength

Methods inherited from class org.inb.biomoby.shared.message.MobyObject

getAttributes, getCrossReference, putAttribute, removeAttribute, removeCrossReference, setCrossReference, toString

Methods inherited from class org.inb.biomoby.shared.message.AbstractMobyObject

getMobyId, getNamespace, setMobyId, setNamespace

Methods inherited from class org.inb.biomoby.shared.message.AbstractMobyElement

getArticleName, setArticleName

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ScoredMotifAnnotatedAASequence

public ScoredMotifAnnotatedAASequence()

Method Detail

getAnnotations

public List<? extends ScoredMotifAnnotation> getAnnotations()

addAnnotations

public void addAnnotations(ScoredMotifAnnotation annotations)