Hierarchy For Package org.inb.biomoby.shared.ontology

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • org.inb.biomoby.shared.message.AbstractMobyElement (implements java.io.Serializable)
    • org.inb.biomoby.shared.message.AbstractMobyObject (implements java.io.Serializable)
      • org.inb.biomoby.shared.message.MobyObject (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Annotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.AntigenicAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.BL2GAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.BLOCKAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.CpGAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.EquicktandemAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.FeatureAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.LutefiskAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.MolWeightAnnotation (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.ProbMolWeightAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.MotifAnnotation (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.ScoredMotifAnnotation (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.InterProMotifAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.RestrictAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.SigcleaveAnnotation (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.StructureBoundaries (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.StructureFragment (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.TransmembraneAnnotation (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.AnnotationHits (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Array (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ArrayFloat (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.MolWeightsArray (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ArrayInteger (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ArrayString (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ArrayXYData (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.BasicAnnotation (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.ByoDynOEDParameter (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.ByoDynTarget (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.CATHDomain (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Clustering (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.CommentedObject (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.CommentedWeightedObject (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Domain (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.AnnotatedDomain (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Element (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ElementFloat (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ElementInteger (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ElementString (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ElementXYData (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.ENSEMBLHomolog (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.ExpressionCore (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ExpressionStatistics (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.FamilyBLOCKAnnotation (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.GOTerm (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.HierarchicalClustering (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.HMMPfam_Report (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.HMMSearch_Report (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Image_Encoded (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.Typed_Image (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Interaction (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.InteractionMethod (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Interactor (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.ISS_Report (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.LutefiskReport (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Matrix (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.MatrixFloat (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Distance_Matrix (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.NCut_Matrix (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.MatrixInteger (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.MatrixString (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.MultiParameter (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.OMIM (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Parameter (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.Parameters4Values (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.ParametersToVary (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.Target (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.TargetArgument (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Pattern (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.MatchingPattern (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.PepinfoReport (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.ProdomMotif (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.PrositeMotif (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Rules (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.SCOPLayerNode (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.StructureDomain (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.SCOPDomain (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Text__plain (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.Text__formatted (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.BLAST__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Clustalw_Evaluated_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.ClusterProfile_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.CodcmpReport_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.CodonUsageTable_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Consensus_Sequence_Text (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.HMM_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.DCCP_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.DifferentialExpressionTest__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.DifferentialExpressionTest_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.DSSP_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.DTA_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.EMBL_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Enzymatic_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FASTA (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.FASTA_AA (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.FASTA_AA_multi (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.FASTA_NA (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.FASTA_NA_multi (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FASTA_pep (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FASTA_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FatiGO_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FSOLV_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FSSP_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.GenBank_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.GFF (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.GFF2 (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.GFF3 (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.HSSP_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.List__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.List_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.MEME_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Meta_Alignment_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.MicroArrayData__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.MicroArrayData_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.MmCIF__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.MmCIF_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.MotifMatrix (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.NAMD_Conf_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.NCBI_BLAST_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.NCut_Clusters (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.NCut_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.NDB__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Newick__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Newick_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.PDB__Text (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.AnnotatedStructure (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.NAMD_Structure (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.NAMD_Output (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.PDB_Enriched (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.Structure_Alignment_Report (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Pepcoil_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Pepstats_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.PHD_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Phylip_tree_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Phylip_treefile_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.PMUT_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Prediction__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.PredictorTraining_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.PrositeDoc_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.PSF_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.RefSeq_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.Sequence_alignment_report (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.Clustalw_Text (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.MSF (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.Phylip_Text (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.Phylip_Interleaved_Text (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.PIR_Text (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.Stockholm_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.SequenceDescription_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.SwissProt_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.TFscan_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.URL__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.WeightedList__Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.WeightedList_Text (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.Text__html (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.DGPI_Report (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.TreeDet_Annotation_HTML (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.Text__xhtml (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.Text__xml (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.BLAST_XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.ByoDynInput (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.CathDomainDescription_XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.DASGFF (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FatiGO__XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FatiScan__XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FatiScan_Text (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.FunCUT_Annotation_XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.GOGraph (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.IntAct_XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.ISS_Annotation_XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.PredictionModel__XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.SIAM_Annotation_XML (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.TreeDet_Annotation_XML (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.TreeDet_Report (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.VirtualSequence (implements java.io.Serializable)
          • org.inb.biomoby.shared.ontology.GenericSequence (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.AminoAcidSequence (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.CommentedAASequence (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.AnnotatedAASequence (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.AntigenicAnnotatedAASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.AntigenicReport (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.BlocksAnnotatedAASequence (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.FeatureAnnotatedAASequence (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.InterProMotifAnnotatedAASequence (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.LutefiskAnnotatedAASequence (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.MolWeightsAnnotatedAASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.DigestReport (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.EmowseAnnotatedAASequence (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.MotifAnnotatedAASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.PPSearchReport (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.ProbMolWeightsAnnotatedAASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.PepNovoReport (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.ScoredMotifAnnotatedAASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.PatmatdbReport (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.PatmatmotifsReport (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.SigcleaveAnnotatedAASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.SigcleaveReport (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.TransmembraneAnnotatedAASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.TransmembraneReport (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.CommentedAASubsequence (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.DomainAnnotatedSequence (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.FeatureAASequence (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.WeightedAminoAcidSequences (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.NucleotideSequence (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.CommentedNASequence (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.AnnotatedNASequence (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.CpGAnnotatedNASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.CpGReport (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.EquicktandemAnnotatedNASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.EquicktandemReport (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.RestrictAnnotatedNASequence (implements java.io.Serializable)
                    • org.inb.biomoby.shared.ontology.RestrictReport (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.DNASequence (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.CommentedDNASequence (implements java.io.Serializable)
                  • org.inb.biomoby.shared.ontology.TTS (implements java.io.Serializable)
              • org.inb.biomoby.shared.ontology.RNASequence (implements java.io.Serializable)
                • org.inb.biomoby.shared.ontology.CommentedRNASequence (implements java.io.Serializable)
            • org.inb.biomoby.shared.ontology.PropertySequence (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.WeightedObject (implements java.io.Serializable)
        • org.inb.biomoby.shared.ontology.Zip_Encoded (implements java.io.Serializable)