Uses of Class
org.biomoby.shared.MobyDataType

Packages that use MobyDataType

ca.ucalgary.seahawk.gui	Seahawk is a graphical MOBY client that can be used standalone, or easily embedded in another Java application.
ca.ucalgary.seahawk.services
ca.ucalgary.seahawk.util
org.biomoby.client	The components used for developing Moby clients.
org.biomoby.registry.sync.handler
org.biomoby.service.dashboard
org.biomoby.service.dashboard.data
org.biomoby.shared	It contains components that are used from more than one (other) packages.
org.biomoby.shared.data	The package org.biomoby.shared.data allows you to easily build MOBY data instances for sending to services, or querying the registry.
org.biomoby.shared.extended

Uses of MobyDataType in ca.ucalgary.seahawk.gui

Methods in ca.ucalgary.seahawk.gui with parameters of type MobyDataType

JMenu

MobyServicesGUI.addOutputTypeSubMenu(JMenu parentMenu, MobyDataType type)

Constructors in ca.ucalgary.seahawk.gui with parameters of type MobyDataType

DataImportChoiceDialog(Frame owner, MobyDataObject[] dataChoices, MobyDataType preferredDataType, MobyNamespace preferredNs, DataImportChoiceListener dicl)

MobyDataObjectWidget(String articleName, MobyClient client, MobyDataType dataType, MobyNamespace[] nss, boolean isaCollection)
C-tor for uninstantiated data.

Uses of MobyDataType in ca.ucalgary.seahawk.services

Methods in ca.ucalgary.seahawk.services that return MobyDataType

MobyDataType

MobyComplexBuilder.getDataType() Reports the data type of the objects returned by matched rules.

Methods in ca.ucalgary.seahawk.services with parameters of type MobyDataType

boolean	MobyClient.canProduceDataTypeFromString(MobyDataType targetDataType) Indicates whether at least one production rule exists for the data type or one of its children.
MobyDataObject[]	MobyClient.getMobyObjects(byte[] rawData, MobyDataType targetDataType) Using the regular expression mappings that have been set up, maps a string using rules producing moby objects of the given type.
MobyDataObject[]	MobyClient.getMobyObjects(CharSequence textData, MobyDataType targetDataType)
MobyDataObject[]	MobyClient.getMobyObjects(CharSequence textData, MobyDataType targetDataType, MobyNamespace targetNS) Using the regular expression mappings that have been set up, maps a string using rules producing moby objects of the given type.
MobyDataObject[]	MobyClient.getMobyObjects(URL url, MobyDataType targetDataType)
MobyDataObject[]	MobyClient.getMobyObjects(URL url, String linkText, MobyDataType targetDataType)

Uses of MobyDataType in ca.ucalgary.seahawk.util

Constructors in ca.ucalgary.seahawk.util with parameters of type MobyDataType

MobyDataObjectDeferred(MobyDataType dt, MobyNamespace ns, MobyPayloadRequestListener listener)

MobyDataObjectDeferred(MobyDataType dt, MobyPayloadRequestListener listener)

Uses of MobyDataType in org.biomoby.client

Fields in org.biomoby.client declared as MobyDataType

MobyDataType	DataTypeConnector.inputDataType
MobyDataType	DataTypeConnector.outputDataType

Methods in org.biomoby.client that return MobyDataType

MobyDataType	DataServiceEdge.getDataType() Retrieves the data type (regardless if it is a source or a target data type, there is always only one data type in this class).
MobyDataType	CentralImpl.getDataType(String dataTypeName) Parses and imports the following XML.
MobyDataType[]	CentralDigestCachedImpl.getDataTypes()
MobyDataType[]	CentralDigestImpl.getDataTypes()
MobyDataType[]	CentralDigestCachedSimpleImpl.getDataTypes()
MobyDataType[]	CentralImpl.getDataTypes()
static MobyDataType[]	FilterDataTypes.getSubTree(MobyDataType dataType, MobyDataType[] allDataTypes) Return a subset of 'allDataTypes' that contains only a path from 'dataType' to the top-level object, including all HAS and HASA members along the way.

Methods in org.biomoby.client with parameters of type MobyDataType

static ServicesEdge[]	ServiceConnections.build(MobyDataType[] dataTypes, MobyService[] services) Creates all (allowed) connections between given 'services' based on the given 'dataTypes'.
static String	Graphviz.createDataTypesGraph(MobyDataType[] dataTypes, Properties props) Creates a graph connecting 'dataTypes' using their ISA relationship and showing also their HASA children.
static DataServiceEdge[]	ServiceConnections.findEndingEdges(MobyPrimaryDataSimple targetData, MobyDataType[] dataTypes, MobyService[] services)
static DataServiceEdge[]	ServiceConnections.findStartingEdges(MobyPrimaryDataSimple sourceData, MobyDataType[] dataTypes, MobyService[] services)
String	CentralImpl.getRegisterDataTypeXML(MobyDataType dataType)
static MobyDataType[]	FilterDataTypes.getSubTree(MobyDataType dataType, MobyDataType[] allDataTypes) Return a subset of 'allDataTypes' that contains only a path from 'dataType' to the top-level object, including all HAS and HASA members along the way.
static MobyDataType[]	FilterDataTypes.getSubTree(MobyDataType dataType, MobyDataType[] allDataTypes) Return a subset of 'allDataTypes' that contains only a path from 'dataType' to the top-level object, including all HAS and HASA members along the way.
static Hashtable	ServiceConnections.optimizedDataTypes(MobyDataType[] dataTypes) Make the data types better searchable.
void	CentralImpl.registerDataType(MobyDataType dataType)
void	CentralImpl.unregisterDataType(MobyDataType dataType) B

Constructors in org.biomoby.client with parameters of type MobyDataType

DataServiceEdge(MobyDataType sourceDataType, MobyService targetService, String connector)
Constructs an instance with data type as a source and a service as a target, and a connector.

DataServiceEdge(MobyService sourceService, MobyDataType targetDataType, String connector)
Constructs an instance with data type as a target and a service as a source, and a connector.

Uses of MobyDataType in org.biomoby.registry.sync.handler

Methods in org.biomoby.registry.sync.handler with parameters of type MobyDataType

boolean	DataTypeHandler.register(MobyDataType dataType)
boolean	DataTypeHandler.unregister(MobyDataType dataType)

Uses of MobyDataType in org.biomoby.service.dashboard

Methods in org.biomoby.service.dashboard that return MobyDataType

MobyDataType	RegistryModel.getDataType(String dataTypeName)
MobyDataType[]	RegistryModel.getDataTypes(Object initiator) Fetch data types (from a cache or from a registry).

Methods in org.biomoby.service.dashboard with parameters of type MobyDataType

String	RegistryModel.getRegisterDataTypeXML(MobyDataType dataType)
void	RegistryModel.registerDataType(MobyDataType dataType)
void	RegistryModel.unRegisterDataType(MobyDataType dataType)

Uses of MobyDataType in org.biomoby.service.dashboard.data

Methods in org.biomoby.service.dashboard.data that return MobyDataType

MobyDataType

DataTypeNode.getDataType() Return a Biomoby data type represented by this node.

Methods in org.biomoby.service.dashboard.data with parameters of type MobyDataType

static DataTypeNode

DataTypeNode.createNode(MobyDataType dataType, String memberName, int memberRel, DataTypeNode parent, HashMap dtTable, DataTypeModel model) A factory for a node.

Constructors in org.biomoby.service.dashboard.data with parameters of type MobyDataType

DataTypeModel(MobyDataType rootType, MobyDataType[] dataTypes)
Constructor.

DataTypeModel(MobyDataType rootType, MobyDataType[] dataTypes)
Constructor.

DataTypeTreeTable(MobyDataType rootType, MobyDataType[] dataTypes)
Default constructor.

DataTypeTreeTable(MobyDataType rootType, MobyDataType[] dataTypes)
Default constructor.

ServiceInputPanel(MobyService service, MobyDataType[] dataTypes)
Create a GUI for all inputs for the given service.

Uses of MobyDataType in org.biomoby.shared

Subclasses of MobyDataType in org.biomoby.shared

class

MobyDataTypeTemplate You probably don't need to be looking at this class.

Methods in org.biomoby.shared that return MobyDataType

MobyDataType	MobyPrimaryDataSet.getDataType() Return a data type of the first element of this collection (according the Biomoby API, however, all elements should have the same data type).
abstract MobyDataType	MobyPrimaryData.getDataType()
MobyDataType	MobyPrimaryDataSimple.getDataType()
MobyDataType	Central.getDataType(String dataTypeName) Get definition of the given data type.
static MobyDataType	MobyDataType.getDataType(String className)
static MobyDataType	MobyDataType.getDataType(String className, Registry reg) Retrieves a datatype object from the registry's ontology.
MobyDataType[]	CentralDigest.getDataTypes() Get definition of all known data types.
MobyDataType[]	Central.getDataTypes()
MobyDataType[]	MobyDataType.getLineage() A convenience method for retrieving the entire inheritance tree for this MOBY object class.
MobyDataType	MobyDataType.getParent()

Methods in org.biomoby.shared with parameters of type MobyDataType

void	MobyDataTypeTemplate.bindTemplate(MobyDataType subtype)
int	MobyDataType.compareTo(MobyDataType obj)
boolean	MobyDataType.inheritsFrom(MobyDataType otherType) Searches the ontology lineage of the current data type against the provided type.
void	Central.registerDataType(MobyDataType dataType) Register new data type.
void	MobyPrimaryDataSet.setDataType(MobyDataType dataType) Set given data type to all elements of this collection (according the Biomoby API all elements should have the same data type).
abstract void	MobyPrimaryData.setDataType(MobyDataType value)
void	MobyPrimaryDataSimple.setDataType(MobyDataType value)
void	Central.unregisterDataType(MobyDataType dataType) Unregister given Moby data type.

Constructors in org.biomoby.shared with parameters of type MobyDataType

MobyDataTypeTemplate(MobyDataType mdt)

Uses of MobyDataType in org.biomoby.shared.data

Methods in org.biomoby.shared.data that return MobyDataType

MobyDataType	MobyDataObjectSetSAI.getDataType()
MobyDataType	MobyDataObjectSAI.getDataType()
MobyDataType	MobyDataObjectSet.getDataType() Return the least upper bound parent class of all items in the collection.

Constructors in org.biomoby.shared.data with parameters of type MobyDataType

MobyDataBytes(String name, byte[] data, MobyDataType inputDataType)
C-tor to use when you have binary data to encode

MobyDataBytes(String name, CharSequence data, MobyDataType inputDataType)
C-tor to use when you have received text-encoded binary.

MobyDataBytes(String name, URL resourceURL, MobyDataType inputDataType)
C-tor to use when you want to encode a resource, such as an image file.

MobyDataComposite(MobyDataType type)

MobyDataComposite(MobyDataType type, MobyNamespace namespace, String id, Object... memberStrings)
Instantiates a composite with a variable number of members using Java 1.5's varargs.

MobyDataComposite(MobyDataType type, String name)

MobyDataComposite(MobyDataType type, String name, MobyNamespace namespace, String id)

MobyDataComposite(MobyDataType type, String name, String namespace, String id)

Uses of MobyDataType in org.biomoby.shared.extended

Methods in org.biomoby.shared.extended that return MobyDataType

MobyDataType[]

DataTypeParser.getMobyDataTypesFromRDF()