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Class Summary |
| BrowserLauncher |
BrowserLauncher is a class that provides one static method, openURL, which opens the default
web browser for the current user of the system to the given URL. |
| CloseTabIcon |
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| CombinedIcon |
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| DataFlowRecorder |
Takes a browsing history in Seahawk and turns it into a Taverna2 workflow (Programming-by-Example). |
| DataUtils |
Contains methods for the storage and retrieval of Seahawk-specific information from
Moby XML payloads, specifically in the context of data provenance for programming-by-example. |
| DescriptiveFileFilter |
A FileFilter used to provide meaningful extensions and descriptions when using a file dialog. |
| DynamicJPopupMenu |
This class was created to overcome the basic issue that JPopupMenus do not like to be resized
once they have been set visible. |
| FilterSearch |
Holds info to limit the display of information from a document to some
combination of a regex match and an XPath. |
| HTMLUtils |
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| MobyDataObjectDeferred |
A class that pretends it's a real moby data instance, but is actually a deferred list of data instances
that should be submitted en-masse to services. |
| MobyDataObjectDeferredSAI |
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| MobyDataObjectSetDeferred |
A class that pretends it's a real moby data collection instance, but is actually a deferred list of data collection instances
that should be submitted en-masse to services. |
| MobyDataObjectSetDeferredSAI |
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| MobyDataTransferable |
Representation of Moby data from the org.biomoby.shared.data package
when copied to a Clipboard. |
| MobyUtils |
Contains utility methods for Moby Object creation from unstructured data, and for
creating the Seahawk GUI. |
| MutableNodeList |
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| NullIcon |
An empty icon that prints nothing (used for new tabs with no contents) |
| PrintableJEditorPane |
A class used to make the rendered contents of a JEditorPane printable in Java. |
| SeahawkOptions |
A class for storing user preferences affecting the behaviour of Seahawk. |
| Sequence |
Utility methods to report properties of DNA and protein sequence. |
| SplashWindow |
A Splash window. |
| TEX2HTML |
Converts a large subset of basic latex markup into equivalent HTML |
| XPathOption |
Simple class to hold an XPath and a textual description of the XPath,
generally for use in a JComboBox, etc. where the toString() is important. |
| XPointerResolver |
Retrieves XML DOM Nodes form a document using XPointer locators such as /1/1/2/3/1/67. |