Uses of Class
org.inb.biomoby.shared.message.AbstractMobyObject

Packages that use AbstractMobyObject

org.inb.biomoby
org.inb.biomoby.client.gui
org.inb.biomoby.client.gui.auxiliary
org.inb.biomoby.client.gui.ontology
org.inb.biomoby.shared.datatypes
org.inb.biomoby.shared.message
org.inb.biomoby.shared.ontology

Uses of AbstractMobyObject in org.inb.biomoby

Methods in org.inb.biomoby with parameters of type AbstractMobyObject

static String

MobyMessageContext.getMobyName(AbstractMobyObject mobyObject)

Uses of AbstractMobyObject in org.inb.biomoby.client.gui

Classes in org.inb.biomoby.client.gui with type parameters of type AbstractMobyObject

class	AbstractMobyComponent<T extends AbstractMobyObject> An abstract visualization component that all components must extend.
class	DefaultMobyComponent<T extends AbstractMobyObject>
class	DynamicMobyComponent<K extends AbstractMobyObject,T extends IDynamicComponent.MobyComponentListener>

Uses of AbstractMobyObject in org.inb.biomoby.client.gui.auxiliary

Methods in org.inb.biomoby.client.gui.auxiliary that return AbstractMobyObject

AbstractMobyObject	MultilineCommentedAASequenceDescriptionPane.getData()
AbstractMobyObject	MultilineCommentedNASequenceDescriptionMobyComponent.getData()
AbstractMobyObject	AssertedWrapperComponent.getData()

Uses of AbstractMobyObject in org.inb.biomoby.client.gui.ontology

Methods in org.inb.biomoby.client.gui.ontology that return AbstractMobyObject

AbstractMobyObject	AnnotationComponent.getData()
AbstractMobyObject	MobyObjectComponent.getData()
AbstractMobyObject	PatternComponent.getData()

Methods in org.inb.biomoby.client.gui.ontology with parameters of type AbstractMobyObject

static AbstractMobyComponent

MobyComponentFactory.getMobyComponent(AbstractMobyObject object)

Uses of AbstractMobyObject in org.inb.biomoby.shared.datatypes

Subclasses of AbstractMobyObject in org.inb.biomoby.shared.datatypes

class	MobyBinary This class is a not standard Moby primitive type.
class	MobyBoolean
class	MobyDateTime
class	MobyFloat
class	MobyInteger
class	MobyString

Uses of AbstractMobyObject in org.inb.biomoby.shared.message

Subclasses of AbstractMobyObject in org.inb.biomoby.shared.message

class	AnyMobyObject This class is a substitution to ontology classes.
class	MobyObject

Methods in org.inb.biomoby.shared.message with type parameters of type AbstractMobyObject

<T extends AbstractMobyObject> T

MobySimple.getObject()

Methods in org.inb.biomoby.shared.message that return AbstractMobyObject

AbstractMobyObject	AnyMobyObject.getAttribute(String articleName) Method makes public an access to internal properties
AbstractMobyObject	MobySimple.getMobyObject()

Methods in org.inb.biomoby.shared.message that return types with arguments of type AbstractMobyObject

List<AbstractMobyObject>	MobyObject.getAttributes() The method returns all elements (has, hasa as well as inherited from parent elements) Usually there is no need to use this method because datatype generated classes suppose to have apropriate getters and setters for their data.
List<AbstractMobyObject>	AnyMobyObject.getAttributes(String articleName)

Methods in org.inb.biomoby.shared.message with parameters of type AbstractMobyObject

boolean	MobyObject.putAttribute(String articleName, AbstractMobyObject object) The method adds an attribute to the object
void	MobySimple.setMobyObject(AbstractMobyObject object)

Constructors in org.inb.biomoby.shared.message with parameters of type AbstractMobyObject

MobySimple(AbstractMobyObject object)

MobySimple(AbstractMobyObject object, String articleName)

Uses of AbstractMobyObject in org.inb.biomoby.shared.ontology

Subclasses of AbstractMobyObject in org.inb.biomoby.shared.ontology

class	AminoAcidSequence
class	AnnotatedAASequence
class	AnnotatedDomain
class	AnnotatedNASequence
class	AnnotatedStructure
class	Annotation
class	AnnotationHits
class	AntigenicAnnotatedAASequence
class	AntigenicAnnotation
class	AntigenicReport
class	Array
class	ArrayFloat
class	ArrayInteger
class	ArrayString
class	ArrayXYData
class	BasicAnnotation
class	BL2GAnnotation
class	BLAST__Text
class	BLAST_XML
class	BLOCKAnnotation
class	BlocksAnnotatedAASequence
class	ByoDynInput
class	ByoDynOEDParameter
class	ByoDynTarget
class	CATHDomain
class	CathDomainDescription_XML
class	Clustalw_Evaluated_Text
class	Clustalw_Text
class	Clustering
class	ClusterProfile_Text
class	CodcmpReport_Text
class	CodonUsageTable_Text
class	CommentedAASequence
class	CommentedAASubsequence
class	CommentedDNASequence
class	CommentedNASequence
class	CommentedObject
class	CommentedRNASequence
class	CommentedWeightedObject
class	Consensus_Sequence_Text
class	CpGAnnotatedNASequence
class	CpGAnnotation
class	CpGReport
class	DASGFF
class	DCCP_Text
class	DGPI_Report
class	DifferentialExpressionTest__Text
class	DifferentialExpressionTest_Text
class	DigestReport
class	Distance_Matrix
class	DNASequence
class	Domain
class	DomainAnnotatedSequence
class	DSSP_Text
class	DTA_Text
class	Element
class	ElementFloat
class	ElementInteger
class	ElementString
class	ElementXYData
class	EMBL_Text
class	EmowseAnnotatedAASequence
class	ENSEMBLHomolog
class	Enzymatic_Text
class	EquicktandemAnnotatedNASequence
class	EquicktandemAnnotation
class	EquicktandemReport
class	ExpressionCore
class	ExpressionStatistics
class	FamilyBLOCKAnnotation
class	FASTA
class	FASTA_AA
class	FASTA_AA_multi
class	FASTA_NA
class	FASTA_NA_multi
class	FASTA_pep
class	FASTA_Text
class	FatiGO__XML
class	FatiGO_Text
class	FatiScan__XML
class	FatiScan_Text
class	FeatureAASequence
class	FeatureAnnotatedAASequence
class	FeatureAnnotation
class	FSOLV_Text
class	FSSP_Text
class	FunCUT_Annotation_XML
class	GenBank_Text
class	GenericSequence
class	GFF
class	GFF2
class	GFF3
class	GOGraph
class	GOTerm
class	HierarchicalClustering
class	HMM_Text
class	HMMPfam_Report
class	HMMSearch_Report
class	HSSP_Text
class	Image_Encoded
class	IntAct_XML
class	Interaction
class	InteractionMethod
class	Interactor
class	InterProMotifAnnotatedAASequence
class	InterProMotifAnnotation
class	ISS_Annotation_XML
class	ISS_Report
class	List__Text
class	List_Text
class	LutefiskAnnotatedAASequence
class	LutefiskAnnotation
class	LutefiskReport
class	MatchingPattern
class	Matrix
class	MatrixFloat
class	MatrixInteger
class	MatrixString
class	MEME_Text
class	Meta_Alignment_Text
class	MicroArrayData__Text
class	MicroArrayData_Text
class	MmCIF__Text
class	MmCIF_Text
class	MolWeightAnnotation
class	MolWeightsAnnotatedAASequence
class	MolWeightsArray
class	MotifAnnotatedAASequence
class	MotifAnnotation
class	MotifMatrix
class	MSF
class	MultiParameter
class	NAMD_Conf_Text
class	NAMD_Output
class	NAMD_Structure
class	NCBI_BLAST_Text
class	NCut_Clusters
class	NCut_Matrix
class	NCut_Text
class	NDB__Text
class	Newick__Text
class	Newick_Text
class	NucleotideSequence
class	OMIM
class	Parameter
class	Parameters4Values
class	ParametersToVary
class	PatmatdbReport
class	PatmatmotifsReport
class	Pattern
class	PDB__Text
class	PDB_Enriched
class	Pepcoil_Text
class	PepinfoReport
class	PepNovoReport
class	Pepstats_Text
class	PHD_Text
class	Phylip_Interleaved_Text
class	Phylip_Text
class	Phylip_tree_Text
class	Phylip_treefile_Text
class	PIR_Text
class	PMUT_Text
class	PPSearchReport
class	Prediction__Text
class	PredictionModel__XML
class	PredictorTraining_Text
class	ProbMolWeightAnnotation
class	ProbMolWeightsAnnotatedAASequence
class	ProdomMotif
class	PropertySequence
class	PrositeDoc_Text
class	PrositeMotif
class	PSF_Text
class	RefSeq_Text
class	RestrictAnnotatedNASequence
class	RestrictAnnotation
class	RestrictReport
class	RNASequence
class	Rules
class	SCOPDomain
class	SCOPLayerNode
class	ScoredMotifAnnotatedAASequence
class	ScoredMotifAnnotation
class	Sequence_alignment_report
class	SequenceDescription_Text
class	SIAM_Annotation_XML
class	SigcleaveAnnotatedAASequence
class	SigcleaveAnnotation
class	SigcleaveReport
class	Stockholm_Text
class	Structure_Alignment_Report
class	StructureBoundaries
class	StructureDomain
class	StructureFragment
class	SwissProt_Text
class	Target
class	TargetArgument
class	Text__formatted
class	Text__html
class	Text__plain
class	Text__xhtml
class	Text__xml
class	TFscan_Text
class	TransmembraneAnnotatedAASequence
class	TransmembraneAnnotation
class	TransmembraneReport
class	TreeDet_Annotation_HTML
class	TreeDet_Annotation_XML
class	TreeDet_Report
class	TTS
class	Typed_Image
class	URL__Text
class	VirtualSequence
class	WeightedAminoAcidSequences
class	WeightedList__Text
class	WeightedList_Text
class	WeightedObject
class	Zip_Encoded