Uses of Class
org.biomoby.shared.data.MobyDataJob

Packages that use MobyDataJob

ca.ucalgary.seahawk.gui	Seahawk is a graphical MOBY client that can be used standalone, or easily embedded in another Java application.
ca.ucalgary.seahawk.util
ca.ucalgary.services
org.biomoby.service	It contains general components that can be used by those writing code for Moby services.
org.biomoby.service.test
org.biomoby.shared.data	The package org.biomoby.shared.data allows you to easily build MOBY data instances for sending to services, or querying the registry.

Uses of MobyDataJob in ca.ucalgary.seahawk.gui

Methods in ca.ucalgary.seahawk.gui with parameters of type MobyDataJob

void	MobyContentGUI.serviceWrapped(String providerURI, String serviceName, MobyDataJob sampleData) Called after a service has been created by the wrapping system, with the intention that the new service should be called and included in the browsing session.

Uses of MobyDataJob in ca.ucalgary.seahawk.util

Methods in ca.ucalgary.seahawk.util that return MobyDataJob

static MobyDataJob	DataUtils.getInputSample(Document responseDom, Registry registry) Backtrack from a service result to the input doc sent to the service
static MobyDataJob	DataUtils.getInputSample(Document responseDom, String jobName, Registry registry) Same as two-arg, but retrieves a specific job's input (or null if not a job name found in the doc).

Methods in ca.ucalgary.seahawk.util with parameters of type MobyDataJob

static URL

DataUtils.createServiceInputFileForPeers(MobyContentInstance peerJobs, MobyDataJob sampleJob) Create a temp file that populates the MobyContentInstance from the sample data for all missing fields in peerJobs.

Constructors in ca.ucalgary.seahawk.util with parameters of type MobyDataJob

MobyDataTransferable(MobyDataJob job)
C-tor to use when you have a complete job to transfer (a.k.a. a mobyData block).

Uses of MobyDataJob in ca.ucalgary.services

Methods in ca.ucalgary.services with parameters of type MobyDataJob

void	CGIService.processRequest(MobyDataJob request, MobyDataJob result)
void	WSDLService.processRequest(MobyDataJob request, MobyDataJob result)
void	ACDService.processRequest(MobyDataJob request, MobyDataJob result) Runs the command-line program specified by the servlet config, reformatting along the way.

Uses of MobyDataJob in org.biomoby.service

Methods in org.biomoby.service with parameters of type MobyDataJob

void	MobyServlet.processRequest(MobyDataJob request, MobyDataJob result) The real worker method: implementing classes must override this method to do something useful.
static void	MobyServlet.validateArguments(MobyDataJob job, MobyService service, String errMessagePrefix) Throws an exception if the data in the job does not match the input spec of the service.

Uses of MobyDataJob in org.biomoby.service.test

Methods in org.biomoby.service.test with parameters of type MobyDataJob

void	FromFastaToDNASequence.processRequest(MobyDataJob request, MobyDataJob result) Parses a FastA string into its header component and sequence, constructing a MOBY DNASequence object (or subclass thereof), which can be used in more services.
void	ConvertAAtoFASTA_AA.processRequest(MobyDataJob request, MobyDataJob result) Builds a FastA record from a MOBY AminoAcidSequence object.

Uses of MobyDataJob in org.biomoby.shared.data

Methods in org.biomoby.shared.data that return MobyDataJob

MobyDataJob	MobyContentInstance.get(Object fieldName) Retrieves a member (AbstractMap) of the composite with a given field name.
MobyDataJob	MobyContentInstance.put(String queryID, MobyDataJob value)
MobyDataJob	MobyContentInstance.remove(Object fieldName) Removes the query with the given name, if present

Methods in org.biomoby.shared.data that return types with arguments of type MobyDataJob

Set<Map.Entry<String,MobyDataJob>>	MobyContentInstance.entrySet() Retrieves each name/data group pair for the members of content.
Collection<MobyDataJob>	MobyContentInstance.values() Returns all of the queries

Methods in org.biomoby.shared.data with parameters of type MobyDataJob

void	MobyContentInstance.put(MobyDataJob value) same as put(String, MobyDataJob), but the queryID will be automatically generated for this value
MobyDataJob	MobyContentInstance.put(String queryID, MobyDataJob value)

Method parameters in org.biomoby.shared.data with type arguments of type MobyDataJob

void	MobyContentInstance.putAll(Map<? extends String,? extends MobyDataJob> map) Sets a number of queries at once.