Uses of Class
org.biomoby.shared.data.MobyContentInstance

Packages that use MobyContentInstance

ca.ucalgary.seahawk.gui	Seahawk is a graphical MOBY client that can be used standalone, or easily embedded in another Java application.
ca.ucalgary.seahawk.util
org.biomoby.client	The components used for developing Moby clients.
org.biomoby.service	It contains general components that can be used by those writing code for Moby services.
org.biomoby.shared.data	The package org.biomoby.shared.data allows you to easily build MOBY data instances for sending to services, or querying the registry.

Uses of MobyContentInstance in ca.ucalgary.seahawk.gui

Methods in ca.ucalgary.seahawk.gui that return MobyContentInstance

MobyContentInstance	MobyContentGUI.callService(MobyService service, MobyContentInstance inEnvelope)
MobyContentInstance	MobyPayloadCreator.createPayload(String targetJobArgName)
MobyContentInstance	MobyDataObjectWidget.exportMobyContent() Used to send data out to the clipboard.
MobyContentInstance	MobyContentProducer.exportMobyContent() Callback routine used by MobyObjectTransferHandler once it has resolved the data to paste.
MobyContentInstance	MobyContentClipboard.getContents() Get the Java representation of the data on the clipboard (as a MOBY data envelope), including any possible non-standard contents.

Methods in ca.ucalgary.seahawk.gui with parameters of type MobyContentInstance

void	MobyContentClipboard.addCollectionData(MobyContentInstance mci) Objects in the content instance will be flattened into a list and appended to the current contents of the collection.
MobyContentInstance	MobyContentGUI.callService(MobyService service, MobyContentInstance inEnvelope)
Map<String,MobyDataInstance>	MobyObjectTransferHandler.getDataFromMobyContents(Map<String,MobyPrimaryData> acceptableData, MobyContentInstance mci)
void	MobyContentGUI.loadPaneFromObject(MobyContentInstance mci, boolean useDefaultHandler) Load a Seahawk browser tab with the data held in the given MobyContentInstance.

Uses of MobyContentInstance in ca.ucalgary.seahawk.util

Methods in ca.ucalgary.seahawk.util that return MobyContentInstance

static MobyContentInstance	HTMLUtils.checkForMobyXML(String text) Given an HTML fragment (e.g. cut'n'pasted from a browser), see if we unescape the HTML we get a MOBY XML block (e.g. from the biomoby.org web site examples).
static MobyContentInstance	MobyUtils.convertURLtoMobyBinaryData(MobyClient client, URL url) The purpose of this method is to create a MOBY document to encapsulate a binary data object stored at the given URL.
MobyContentInstance	MobyPayloadRequestListener.createPayload(String paramNameforJobs) Assumes the listener knows what payload to create based on some internal context stored by the listener.
MobyContentInstance	MobyDataObjectSetDeferred.getAllContents(String jobParamName)
MobyContentInstance	MobyDataObjectSetDeferredSAI.getAllContents(String jobParamName)
MobyContentInstance	MobyDataObjectDeferredSAI.getAllContents(String jobParamName)
MobyContentInstance	MobyDataObjectDeferred.getAllContents(String jobParamName)
MobyContentInstance	MobyContentCreator.getAllContents(String jobParamName)

Methods in ca.ucalgary.seahawk.util with parameters of type MobyContentInstance

static void	DataUtils.addUserDataToPayload(MobyContentInstance contentInstance, Document sourceDoc) Tacks the data provenance info saved as processing instructions during saveInputData() back into the MobyContentInstance loaded from file using the usual, customization-oblivious MobyDataUtils.fromXMLDocument().
static URL	DataUtils.createServiceInputFileForPeers(MobyContentInstance peerJobs, MobyDataJob sampleJob) Create a temp file that populates the MobyContentInstance from the sample data for all missing fields in peerJobs.
static Transferable	MobyUtils.createTransferable(MobyContentInstance contents)
static URL	DataUtils.saveOutputData(MobyContentInstance outputData, MobyService payloadSource, MobyContentInstance inputData, String registryEndpoint)

Constructors in ca.ucalgary.seahawk.util with parameters of type MobyContentInstance

MobyDataTransferable(MobyContentInstance mci)
C-tor to use when you have a whole MOBY payload to transfer (potentially many jobs, a.k.a. mobyData blocks).

Uses of MobyContentInstance in org.biomoby.client

Methods in org.biomoby.client that return MobyContentInstance

MobyContentInstance	MobyRequestEvent.getContent()
MobyContentInstance	MobyRequest.getInput()
MobyContentInstance	MobyRequest.getOutput()
MobyContentInstance	MobyRequestEvent.getSourceInput() This method should be used instead of getSource().getInput() because the MobyRequest object may have multiple concurrent threads using it, meaning that the inputXML is not necessarily what it was when the service was invoked.
MobyContentInstance	MobyRequest.invokeService() The main method of the class.

Methods in org.biomoby.client with parameters of type MobyContentInstance

String	MobyRequest.convertMOBYDataToMOBYRequest(MobyContentInstance data) Creates an XML representation of the data, renamed to fit the needs of the service if necessary, and adding any secondary parameter default values if not already specified in the incoming data.
static EndpointReference	AsyncClient.sendRequest(MobyService service, MobyContentInstance contents)
void	MobyRequestEvent.setContent(MobyContentInstance mci) If you are a service provider who got this event through a callback (client connection), this is where you would write the output, which also denotes that you are finished with client communication (anything done after calling this method will be ignore).
void	MobyRequest.setInput(MobyContentInstance data) Sets the input data for the MOBY service request.
void	MobyRequestEvent.setSourceInput(MobyContentInstance inputPayload)

Constructors in org.biomoby.client with parameters of type MobyContentInstance

MobyRequestEvent(MobyContentInstance mci, MobyRequest requestSource, MobyService serv, MobyContentInstance serviceInput, Throwable e, int id)

Uses of MobyContentInstance in org.biomoby.service

Methods in org.biomoby.service that return MobyContentInstance

MobyContentInstance

MobyServlet.getMobyContents(javax.servlet.http.HttpServletRequest request)

Methods in org.biomoby.service with parameters of type MobyContentInstance

void	MobyServlet.processRequests(MobyContentInstance requestContents, MobyContentInstance resultContents) By default, this method will sequentially execute the individual jobs from the request payload (processRequest).

Uses of MobyContentInstance in org.biomoby.shared.data

Methods in org.biomoby.shared.data that return MobyContentInstance

static MobyContentInstance	MobyDataUtils.fromXMLDocument(Element doc_root) Create a MOBY Java object representation from a MOBY XML payload represented in a DOM.
static MobyContentInstance	MobyDataUtils.fromXMLDocument(Element doc_root, Registry registry) Create a MOBY Java object representation from a MOBY XML payload represented in a DOM.
static MobyContentInstance	MobyDataUtils.fromXMLDocument(InputStream is) Create a MOBY Java object representation from a MOBY XML payload coming from an InputStream (a byte stream that will becoverted by the parser into character data).
static MobyContentInstance	MobyDataUtils.fromXMLDocument(InputStream is, Registry registry)
static MobyContentInstance	MobyDataUtils.fromXMLDocument(Reader reader) Create a MOBY Java object representation from a MOBY XML payload coming from a Reader (character data).
static MobyContentInstance	MobyDataUtils.fromXMLDocument(Reader reader, Registry registry)
static MobyContentInstance	MobyDataUtils.fromXMLDocument(String xmlData) Create a MOBY Java object representation from a MOBY XML payload stored in a String.
static MobyContentInstance	MobyDataUtils.fromXMLDocument(String xmlData, Registry registry)
static MobyContentInstance	MobyDataUtils.fromXMLDocument(URL url) Create a MOBY Java object representation from a MOBY XML payload at the given URL.
static MobyContentInstance	MobyDataUtils.fromXMLDocument(URL url, Registry registry)

Methods in org.biomoby.shared.data with parameters of type MobyContentInstance

static boolean	MobyDataUtils.toXMLDocument(OutputStream os, MobyContentInstance mci) Writes the XML version of the contents, with an XML declaration.
static boolean	MobyDataUtils.toXMLDocument(OutputStream os, MobyContentInstance mci, boolean includeXMLDeclaration) Output the XML representation of the data to an OutputStream (i.e. an output that takes byte data, not character-encoded strings).
static boolean	MobyDataUtils.toXMLDocument(Writer writer, MobyContentInstance mci) Writes the XML version of the contents, with an XML declaration.
static boolean	MobyDataUtils.toXMLDocument(Writer writer, MobyContentInstance mci, boolean includeXMLDeclaration) Output the XML representation of the data to a Writer (i.e. an output that understands character-encoded strings).