Uses of Class
org.biomoby.registry.meta.Registry

Packages that use Registry

ca.ucalgary.seahawk.services
ca.ucalgary.seahawk.util
org.biomoby.client	The components used for developing Moby clients.
org.biomoby.client.rdf.builder	Provides the classes that are necessary for creating BioMoby RDF documents.
org.biomoby.registry.meta
org.biomoby.shared	It contains components that are used from more than one (other) packages.
org.biomoby.shared.data	The package org.biomoby.shared.data allows you to easily build MOBY data instances for sending to services, or querying the registry.

Uses of Registry in ca.ucalgary.seahawk.services

Methods in ca.ucalgary.seahawk.services that return Registry

Registry	TextClient.getRegistry()
Registry	MobyClient.getRegistry()

Methods in ca.ucalgary.seahawk.services with parameters of type Registry

static MobyPrimaryDataSimple	TextClient.getObjectConsumed(URL ruleSource, String ruleURI, Registry reg) Convenience method to backtrack from a mapping rule to the Moby datatype it consumes.
static MobyPrimaryDataSimple	MobyClient.getObjectProduced(URL ruleSource, String ruleURI, Registry reg) Convenience method to backtrack from a mapping rule to the Moby datatype it produces.

Constructors in ca.ucalgary.seahawk.services with parameters of type Registry

MobyClient(Registry reg)
Constructor specifying a particular registry to use.

TextClient(Registry reg)

Uses of Registry in ca.ucalgary.seahawk.util

Methods in ca.ucalgary.seahawk.util that return Registry

static Registry	SeahawkOptions.getRegistry()
static Registry	DataUtils.getRegistry(Document responseDoc) Find out which registry the service that created the reponse is registered in.

Methods in ca.ucalgary.seahawk.util with parameters of type Registry

static String	HTMLUtils.encapsulateBinaryData(URL sourceMobyData, String html, Registry registry)
static MobyDataJob	DataUtils.getInputSample(Document responseDom, Registry registry) Backtrack from a service result to the input doc sent to the service
static MobyDataJob	DataUtils.getInputSample(Document responseDom, String jobName, Registry registry) Same as two-arg, but retrieves a specific job's input (or null if not a job name found in the doc).
static void	SeahawkOptions.setRegistry(Registry reg)

Uses of Registry in org.biomoby.client

Methods in org.biomoby.client with parameters of type Registry

static CentralImpl

CentralImpl.getDefaultCentral(Registry reg)

Uses of Registry in org.biomoby.client.rdf.builder

Constructors in org.biomoby.client.rdf.builder with parameters of type Registry

ServiceInstanceRDF(Registry reg)
Constructor:

Uses of Registry in org.biomoby.registry.meta

Methods in org.biomoby.registry.meta that return Registry

Registry	RegistriesList.get(String synonym)
Registry	Registries.get(String synonym) Return an object with properties of a given BioMoby registry.
Registry[]	RegistriesList.getAll()
Registry[]	Registries.getAll() Return properties of all known BioMoby registries.
static Registry	RegistryCache.getDefaultRegistry()

Methods in org.biomoby.registry.meta with parameters of type Registry

static File	RegistryCache.cacheRegistryOntology(Registry reg, String resourceName) Stores the given resource to a file for retrieval later with getOntologyFile().
static File	RegistryCache.cacheRegistryOntology(Registry reg, String resourceName, long allowedAgeMillis) Stores the given resource to a file for retrieval later with getOntologyFile().
static File	RegistryCache.calcDataTypeOntologyFile(Registry reg)
static File	RegistryCache.calcNamespaceOntologyFile(Registry reg)
static File	RegistryCache.calcServiceOntologyFile(Registry reg)
static File	RegistryCache.calcServiceTypeOntologyFile(Registry reg)
static URL	Registry.findResourceURL(Registry reg, String resourceName) Learn the RDF location for resources of the registry.
static File	RegistryCache.getNamespaceOntologyFile(Registry reg)
static File	RegistryCache.getOntologyFile(Registry reg, String resourceName) Returns where a resource should be cached locally, whether it current exists or not.
static File	RegistryCache.getServiceOntologyFile(Registry reg)
static File	RegistryCache.getServiceTypeOntologyFile(Registry reg)

Constructors in org.biomoby.registry.meta with parameters of type Registry

RegistriesList(Registry[] additionalRegistries)
A constructor that adds registries to the default list.

Uses of Registry in org.biomoby.shared

Methods in org.biomoby.shared that return Registry

Registry	MobyDataType.getRegistry()
Registry	MobyNamespace.getRegistry()
Registry	MobyServiceType.getRegistry()

Methods in org.biomoby.shared with parameters of type Registry

static MobyDataType	MobyDataType.getDataType(String className, Registry reg) Retrieves a datatype object from the registry's ontology.
static MobyNamespace	MobyNamespace.getNamespace(String ns, Registry reg)
static MobyServiceType	MobyServiceType.getServiceType(String className, Registry reg)
static void	MobyServiceType.loadServiceTypes(URL serviceDefURL, Registry reg) Particularly useful for loading namespace definitions from cached file, or refreshing an in-memory cache.
void	MobyDataType.setRegistry(Registry r)
void	MobyNamespace.setRegistry(Registry reg)
void	MobyServiceType.setRegistry(Registry reg)

Constructors in org.biomoby.shared with parameters of type Registry

MobyServiceType(String typeName, Registry reg)

Uses of Registry in org.biomoby.shared.data

Methods in org.biomoby.shared.data with parameters of type Registry

void	MobyDataObject.addCrossReferences(Element e, Registry reg)
static MobyDataInstance	MobyDataObject.createInstanceFromDOM(Element objectTag, Registry registry)
static MobyDataObject	MobyDataObject.createInstanceFromString(String typeName, String value, Registry registry)
static MobyContentInstance	MobyDataUtils.fromXMLDocument(Element doc_root, Registry registry) Create a MOBY Java object representation from a MOBY XML payload represented in a DOM.
static MobyContentInstance	MobyDataUtils.fromXMLDocument(InputStream is, Registry registry)
static MobyContentInstance	MobyDataUtils.fromXMLDocument(Reader reader, Registry registry)
static MobyContentInstance	MobyDataUtils.fromXMLDocument(String xmlData, Registry registry)
static MobyContentInstance	MobyDataUtils.fromXMLDocument(URL url, Registry registry)
static Collection<? extends MobyDataObject>	MobyDataObjectSet.getChildren(Element e, Registry registry)
void	MobyContentInstance.parseDataGroup(Element dataGroupTag, Registry registry)

Constructors in org.biomoby.shared.data with parameters of type Registry

MobyContentInstance(Element objectTag, Registry registry)

MobyDataBoolean(boolean b, Registry r)

MobyDataBoolean(Boolean b, Registry r)

MobyDataBoolean(Element element, Registry registry)

MobyDataBoolean(String articleName, boolean b, Registry registry)

MobyDataBoolean(String articleName, Boolean b, Registry registry)
Every c-tor eventually winds up here

MobyDataBoolean(String booleanString, Registry r)

MobyDataBoolean(String articleName, String booleanString, Registry registry)

MobyDataBytes(Element element, Registry registry)

MobyDataBytes(String name, byte[] data, Registry registry)

MobyDataBytes(String name, CharSequence data, Registry registry)

MobyDataBytes(String name, URL resourceURL, Registry registry)

MobyDataComposite(Element element, Registry registry)

MobyDataComposite(String typeName, Registry r)

MobyDataComposite(String typeName, String name, Registry r)

MobyDataComposite(String typeName, String name, String namespace, String id, Registry registry)

MobyDataDateTime(Element element, Registry registry)

MobyDataDateTime(String articleName, GregorianCalendar cal, Registry registry)

MobyDataDateTime(String articleName, String stringISO8601, Registry registry)

MobyDataFloat(double d, Registry r)

MobyDataFloat(Element element, Registry registry)

MobyDataFloat(Number n, Registry r)

MobyDataFloat(String articleName, double d, Registry registry)

MobyDataFloat(String articleName, Number n, Registry r)

MobyDataFloat(String stringNumber, Registry registry)

MobyDataFloat(String articleName, String stringNumber, Registry registry)

MobyDataInt(Element element, Registry registry)

MobyDataInt(Number n, Registry r)

MobyDataInt(String articleName, int i, Registry registry)

MobyDataInt(String articleName, Number n, Registry registry)

MobyDataInt(String articleName, String stringNumber, Registry registry)

MobyDataObject(Element element, Registry registry)

MobyDataObject(String name, Registry registry)

MobyDataObject(String namespace, String id, Registry registry)

MobyDataObjectSAI(String namespace, String id, MobyService[] services, Registry registry)

MobyDataObjectSet(Element e, Registry registry)

MobyDataObjectSet(String name, Registry reg)

MobyDataObjectSetSAI(String name, MobyService[] services, Registry registry)

MobyDataObjectVector(String name, int initialCapacity, Registry registry)

MobyDataObjectVector(String name, Registry registry)

MobyDataString(CharSequence stringValue, Registry registry)

MobyDataString(Element element, Registry registry)

MobyDataString(String articleName, CharSequence stringValue, Registry registry)

MobyDataXref(Element e, Registry registry)

MobyDataXref(String namespace, String id, String serviceName, String authURI, Registry registry)