Uses of Class
org.inb.biomoby.shared.ontology.AminoAcidSequence

Packages that use AminoAcidSequence

org.inb.biomoby.client.gui.ontology
org.inb.biomoby.shared.ontology

Uses of AminoAcidSequence in org.inb.biomoby.client.gui.ontology

Constructors in org.inb.biomoby.client.gui.ontology with parameters of type AminoAcidSequence

AminoAcidSequenceComponent(AminoAcidSequence sequence)

Uses of AminoAcidSequence in org.inb.biomoby.shared.ontology

Subclasses of AminoAcidSequence in org.inb.biomoby.shared.ontology

class	AnnotatedAASequence
class	AntigenicAnnotatedAASequence
class	AntigenicReport
class	BlocksAnnotatedAASequence
class	CommentedAASequence
class	CommentedAASubsequence
class	DigestReport
class	DomainAnnotatedSequence
class	EmowseAnnotatedAASequence
class	FeatureAASequence
class	FeatureAnnotatedAASequence
class	InterProMotifAnnotatedAASequence
class	LutefiskAnnotatedAASequence
class	MolWeightsAnnotatedAASequence
class	MotifAnnotatedAASequence
class	PatmatdbReport
class	PatmatmotifsReport
class	PepNovoReport
class	PPSearchReport
class	ProbMolWeightsAnnotatedAASequence
class	ScoredMotifAnnotatedAASequence
class	SigcleaveAnnotatedAASequence
class	SigcleaveReport
class	TransmembraneAnnotatedAASequence
class	TransmembraneReport
class	WeightedAminoAcidSequences

Methods in org.inb.biomoby.shared.ontology that return AminoAcidSequence

AminoAcidSequence	CATHDomain.getAtom()
AminoAcidSequence	ProdomMotif.getClosestSeq()
AminoAcidSequence	CATHDomain.getComb()
AminoAcidSequence	ProdomMotif.getConsensus()
AminoAcidSequence	ProbMolWeightAnnotation.getDeNovoPeptide()
AminoAcidSequence	LutefiskAnnotation.getLutefiskPeptide()
AminoAcidSequence	SigcleaveAnnotation.getMaturePeptide()
AminoAcidSequence	TransmembraneAnnotation.getTransmembraneFragment()

Methods in org.inb.biomoby.shared.ontology that return types with arguments of type AminoAcidSequence

List<? extends AminoAcidSequence>

WeightedAminoAcidSequences.getAminoAcidSequence()

Methods in org.inb.biomoby.shared.ontology with parameters of type AminoAcidSequence

void	WeightedAminoAcidSequences.addAminoAcidSequence(AminoAcidSequence aminoAcidSequence)
void	CATHDomain.setAtom(AminoAcidSequence atom)
void	ProdomMotif.setClosestSeq(AminoAcidSequence closestSeq)
void	CATHDomain.setComb(AminoAcidSequence comb)
void	ProdomMotif.setConsensus(AminoAcidSequence consensus)
void	ProbMolWeightAnnotation.setDeNovoPeptide(AminoAcidSequence deNovoPeptide)
void	LutefiskAnnotation.setLutefiskPeptide(AminoAcidSequence lutefiskPeptide)
void	SigcleaveAnnotation.setMaturePeptide(AminoAcidSequence maturePeptide)
void	TransmembraneAnnotation.setTransmembraneFragment(AminoAcidSequence transmembraneFragment)