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Uses of Class
org.inb.biomoby.shared.datatypes.MobyString

Packages that use MobyString
org.inb.biomoby.shared.ontology   
 

Uses of MobyString in org.inb.biomoby.shared.ontology
 

Methods in org.inb.biomoby.shared.ontology that return MobyString
 MobyString MotifAnnotation.getAC()
           
 MobyString FamilyBLOCKAnnotation.getAC()
           
 MobyString ProdomMotif.getAC()
           
 MobyString PrositeMotif.getAC()
           
 MobyString BLOCKAnnotation.getAC()
           
 MobyString GOTerm.getAccession()
           
 MobyString OMIM.getAuthor()
           
 MobyString BLOCKAnnotation.getBLOCK_Evalue()
           
 MobyString BasicAnnotation.getCategory()
           
 MobyString PrositeMotif.getCC()
           
 MobyString TargetArgument.getCellCoordinate()
           
 MobyString StructureBoundaries.getChain()
           
 MobyString FamilyBLOCKAnnotation.getCombined_Evalue()
           
 MobyString SCOPLayerNode.getComentary()
           
 MobyString GOTerm.getComment()
           
 MobyString Pattern.getContent()
           
 MobyString Text__plain.getContent()
           
 MobyString OMIM.getCreation_date()
           
 MobyString PrositeMotif.getDate()
           
 MobyString InterProMotifAnnotation.getDB()
           
 MobyString InteractionMethod.getDefinition()
           
 MobyString GOTerm.getDefinition()
           
 MobyString WeightedObject.getDescription()
           
 MobyString FamilyBLOCKAnnotation.getDescription()
           
 MobyString CommentedRNASequence.getDescription()
           
 MobyString ENSEMBLHomolog.getDescription()
           
 MobyString FeatureAnnotation.getDescription()
           
 MobyString Domain.getDescription()
           
 MobyString CommentedDNASequence.getDescription()
           
 MobyString PrositeMotif.getDescription()
           
 MobyString CommentedObject.getDescription()
           
 MobyString CommentedAASequence.getDescription()
           
 MobyString PropertySequence.getDescription()
           
 MobyString CommentedNASequence.getDescription()
           
 MobyString PDB_Enriched.getDescription()
           
 MobyString ExpressionStatistics.getDevelopmentID()
           
 MobyString ProdomMotif.getDiameter()
           
 MobyString PrositeMotif.getDoc()
           
 MobyString Domain.getDomain_acc()
           
 MobyString Domain.getDomain_ID()
           
 MobyString CATHDomain.getDomain()
           
 MobyString HMMSearch_Report.getDomains()
           
 MobyString HMMPfam_Report.getDomains()
           
 MobyString RestrictAnnotation.getEnzyme_name()
           
 MobyString FeatureAnnotation.getEvidence()
           
 MobyString InterProMotifAnnotation.getEvidence()
           
 MobyString ExpressionStatistics.getExpressionLevel()
           
 MobyString ExpressionStatistics.getExpressionPattern()
           
 MobyString BLOCKAnnotation.getFrame()
           
 MobyString ExpressionCore.getGeneID()
           
 MobyString ENSEMBLHomolog.getGenus()
           
 MobyString HMMSearch_Report.getHeader()
           
 MobyString HMMPfam_Report.getHeader()
           
 MobyString HMMSearch_Report.getHistogram()
           
 MobyString FeatureAnnotation.getId()
           
 MobyString MotifAnnotation.getID()
           
 MobyString ProdomMotif.getID()
           
 MobyString PrositeMotif.getID()
           
 MobyString ByoDynInput.getIntegrationMethod()
           
 MobyString PDB_Enriched.getJmolScript()
           
 MobyString ProdomMotif.getKeywords()
           
 MobyString NCut_Matrix.getListAcc()
           
 MobyString NAMD_Output.getLog()
           
 MobyString Domain.getMethod()
           
 MobyString Image_Encoded.getMimeType()
           
 MobyString Zip_Encoded.getMimeTypte()
           
 MobyString ByoDynInput.getModelFormat()
           
 MobyString MultiParameter.getName()
           
 MobyString EmowseAnnotatedAASequence.getName()
           
 MobyString ENSEMBLHomolog.getName()
           
 MobyString Parameter.getName()
           
 MobyString CATHDomain.getName()
           
 MobyString StructureDomain.getName()
           
 MobyString GOTerm.getName()
           
 MobyString OMIM.getNumber()
           
 MobyString GOTerm.getOntology()
           
 MobyString ArrayXYData.getPlot_title()
           
 MobyString CATHDomain.getProtein_name()
           
 MobyString ProdomMotif.getRadius()
           
 MobyString Zip_Encoded.getRawdata()
           
 MobyString Image_Encoded.getRawdata()
           
 MobyString FeatureAnnotation.getRef()
           
 MobyString RestrictAnnotation.getRestriction_site()
           
 MobyString Interaction.getResult()
           
 MobyString Interaction.getResultUnits()
           
 MobyString Interactor.getRole()
           
 MobyString ByoDynInput.getRunningType()
           
 MobyString CATHDomain.getS100()
           
 MobyString CATHDomain.getS35()
           
 MobyString CATHDomain.getS60()
           
 MobyString CATHDomain.getS95()
           
 MobyString ParametersToVary.getScale()
           
 MobyString CpGAnnotation.getSequence()
           
 MobyString HMMSearch_Report.getSequences()
           
 MobyString HMMPfam_Report.getSequences()
           
 MobyString GenericSequence.getSequenceString()
           
 MobyString LutefiskReport.getSequenceTag()
           
 MobyString InteractionMethod.getShortlabel()
           
 MobyString CATHDomain.getSource()
           
 MobyString AnnotatedStructure.getSource()
           
 MobyString ENSEMBLHomolog.getSpecies()
           
 MobyString HMMSearch_Report.getStatistics()
           
 MobyString FeatureAnnotation.getStatus()
           
 MobyString InterProMotifAnnotation.getStatus()
           
 MobyString FamilyBLOCKAnnotation.getStrand()
           
 MobyString ENSEMBLHomolog.getStrand()
           
 MobyString BL2GAnnotation.getStrand()
           
 MobyString ExpressionCore.getStructureID()
           
 MobyString BasicAnnotation.getTerm()
           
 MobyString InteractionMethod.getTerm()
           
 MobyString ExpressionCore.getTheilerStage()
           
 MobyString ArrayXYData.getTitle()
           
 MobyString OMIM.getTitle()
           
 MobyString MultiParameter.getType()
           
 MobyString ENSEMBLHomolog.getType()
           
 MobyString FeatureAnnotation.getType()
           
 MobyString Parameter.getType()
           
 MobyString BL2GAnnotation.getType()
           
 MobyString ElementString.getValue()
           
 MobyString Parameter.getValue()
           
 MobyString ArrayXYData.getXtitle()
           
 MobyString ArrayXYData.getYtitle()
           
 

Methods in org.inb.biomoby.shared.ontology that return types with arguments of type MobyString
 List<? extends MobyString> ByoDynTarget.getArgument()
           
 List<? extends MobyString> OMIM.getContributor()
           
 List<? extends MobyString> OMIM.getEditorhistory()
           
 List<? extends MobyString> ByoDynOEDParameter.getIdentifiabilityCriteria()
           
 List<? extends MobyString> OMIM.getJournal()
           
 List<? extends MobyString> Rules.getRules()
           
 List<? extends MobyString> OMIM.getSeealso()
           
 List<? extends MobyString> ByoDynOEDParameter.getSensitivityParameters()
           
 List<? extends MobyString> GOTerm.getSynonym()
           
 List<? extends MobyString> ByoDynOEDParameter.getTargetSpecies()
           
 List<? extends MobyString> MultiParameter.getValues()
           
 

Methods in org.inb.biomoby.shared.ontology with parameters of type MobyString
 void ByoDynTarget.addArgument(MobyString argument)
           
 void OMIM.addContributor(MobyString contributor)
           
 void OMIM.addEditorhistory(MobyString editorhistory)
           
 void ByoDynOEDParameter.addIdentifiabilityCriteria(MobyString identifiabilityCriteria)
           
 void OMIM.addJournal(MobyString journal)
           
 void Rules.addRules(MobyString rules)
           
 void OMIM.addSeealso(MobyString seealso)
           
 void ByoDynOEDParameter.addSensitivityParameters(MobyString sensitivityParameters)
           
 void GOTerm.addSynonym(MobyString synonym)
           
 void ByoDynOEDParameter.addTargetSpecies(MobyString targetSpecies)
           
 void MultiParameter.addValues(MobyString values)
           
 void MotifAnnotation.setAC(MobyString aC)
           
 void FamilyBLOCKAnnotation.setAC(MobyString aC)
           
 void ProdomMotif.setAC(MobyString aC)
           
 void PrositeMotif.setAC(MobyString aC)
           
 void BLOCKAnnotation.setAC(MobyString aC)
           
 void GOTerm.setAccession(MobyString accession)
           
 void OMIM.setAuthor(MobyString author)
           
 void BLOCKAnnotation.setBLOCK_Evalue(MobyString bLOCK_Evalue)
           
 void BasicAnnotation.setCategory(MobyString category)
           
 void PrositeMotif.setCC(MobyString cC)
           
 void TargetArgument.setCellCoordinate(MobyString cellCoordinate)
           
 void StructureBoundaries.setChain(MobyString chain)
           
 void FamilyBLOCKAnnotation.setCombined_Evalue(MobyString combined_Evalue)
           
 void SCOPLayerNode.setComentary(MobyString comentary)
           
 void GOTerm.setComment(MobyString comment)
           
 void Pattern.setContent(MobyString content)
           
 void Text__plain.setContent(MobyString content)
           
 void OMIM.setCreation_date(MobyString creation_date)
           
 void PrositeMotif.setDate(MobyString date)
           
 void InterProMotifAnnotation.setDB(MobyString dB)
           
 void InteractionMethod.setDefinition(MobyString definition)
           
 void GOTerm.setDefinition(MobyString definition)
           
 void WeightedObject.setDescription(MobyString description)
           
 void FamilyBLOCKAnnotation.setDescription(MobyString description)
           
 void CommentedRNASequence.setDescription(MobyString description)
           
 void ENSEMBLHomolog.setDescription(MobyString description)
           
 void FeatureAnnotation.setDescription(MobyString description)
           
 void Domain.setDescription(MobyString description)
           
 void CommentedDNASequence.setDescription(MobyString description)
           
 void PrositeMotif.setDescription(MobyString description)
           
 void CommentedObject.setDescription(MobyString description)
           
 void CommentedAASequence.setDescription(MobyString description)
           
 void PropertySequence.setDescription(MobyString description)
           
 void CommentedNASequence.setDescription(MobyString description)
           
 void PDB_Enriched.setDescription(MobyString description)
           
 void ExpressionStatistics.setDevelopmentID(MobyString developmentID)
           
 void ProdomMotif.setDiameter(MobyString diameter)
           
 void PrositeMotif.setDoc(MobyString doc)
           
 void Domain.setDomain_acc(MobyString domain_acc)
           
 void Domain.setDomain_ID(MobyString domain_ID)
           
 void CATHDomain.setDomain(MobyString domain)
           
 void HMMSearch_Report.setDomains(MobyString domains)
           
 void HMMPfam_Report.setDomains(MobyString domains)
           
 void RestrictAnnotation.setEnzyme_name(MobyString enzyme_name)
           
 void FeatureAnnotation.setEvidence(MobyString evidence)
           
 void InterProMotifAnnotation.setEvidence(MobyString evidence)
           
 void ExpressionStatistics.setExpressionLevel(MobyString expressionLevel)
           
 void ExpressionStatistics.setExpressionPattern(MobyString expressionPattern)
           
 void BLOCKAnnotation.setFrame(MobyString frame)
           
 void ExpressionCore.setGeneID(MobyString geneID)
           
 void ENSEMBLHomolog.setGenus(MobyString genus)
           
 void HMMSearch_Report.setHeader(MobyString header)
           
 void HMMPfam_Report.setHeader(MobyString header)
           
 void HMMSearch_Report.setHistogram(MobyString histogram)
           
 void FeatureAnnotation.setId(MobyString id)
           
 void MotifAnnotation.setID(MobyString iD)
           
 void ProdomMotif.setID(MobyString iD)
           
 void PrositeMotif.setID(MobyString iD)
           
 void ByoDynInput.setIntegrationMethod(MobyString integrationMethod)
           
 void PDB_Enriched.setJmolScript(MobyString jmolScript)
           
 void ProdomMotif.setKeywords(MobyString keywords)
           
 void NCut_Matrix.setListAcc(MobyString listAcc)
           
 void NAMD_Output.setLog(MobyString log)
           
 void Domain.setMethod(MobyString method)
           
 void Image_Encoded.setMimeType(MobyString mimeType)
           
 void Zip_Encoded.setMimeTypte(MobyString mimeTypte)
           
 void ByoDynInput.setModelFormat(MobyString modelFormat)
           
 void MultiParameter.setName(MobyString name)
           
 void EmowseAnnotatedAASequence.setName(MobyString name)
           
 void ENSEMBLHomolog.setName(MobyString name)
           
 void Parameter.setName(MobyString name)
           
 void CATHDomain.setName(MobyString name)
           
 void StructureDomain.setName(MobyString name)
           
 void GOTerm.setName(MobyString name)
           
 void OMIM.setNumber(MobyString number)
           
 void GOTerm.setOntology(MobyString ontology)
           
 void ArrayXYData.setPlot_title(MobyString plot_title)
           
 void CATHDomain.setProtein_name(MobyString protein_name)
           
 void ProdomMotif.setRadius(MobyString radius)
           
 void Zip_Encoded.setRawdata(MobyString rawdata)
           
 void Image_Encoded.setRawdata(MobyString rawdata)
           
 void FeatureAnnotation.setRef(MobyString ref)
           
 void RestrictAnnotation.setRestriction_site(MobyString restriction_site)
           
 void Interaction.setResult(MobyString result)
           
 void Interaction.setResultUnits(MobyString resultUnits)
           
 void Interactor.setRole(MobyString role)
           
 void ByoDynInput.setRunningType(MobyString runningType)
           
 void CATHDomain.setS100(MobyString s100)
           
 void CATHDomain.setS35(MobyString s35)
           
 void CATHDomain.setS60(MobyString s60)
           
 void CATHDomain.setS95(MobyString s95)
           
 void ParametersToVary.setScale(MobyString scale)
           
 void CpGAnnotation.setSequence(MobyString sequence)
           
 void HMMSearch_Report.setSequences(MobyString sequences)
           
 void HMMPfam_Report.setSequences(MobyString sequences)
           
 void GenericSequence.setSequenceString(MobyString sequenceString)
           
 void LutefiskReport.setSequenceTag(MobyString sequenceTag)
           
 void InteractionMethod.setShortlabel(MobyString shortlabel)
           
 void CATHDomain.setSource(MobyString source)
           
 void AnnotatedStructure.setSource(MobyString source)
           
 void ENSEMBLHomolog.setSpecies(MobyString species)
           
 void HMMSearch_Report.setStatistics(MobyString statistics)
           
 void FeatureAnnotation.setStatus(MobyString status)
           
 void InterProMotifAnnotation.setStatus(MobyString status)
           
 void FamilyBLOCKAnnotation.setStrand(MobyString strand)
           
 void ENSEMBLHomolog.setStrand(MobyString strand)
           
 void BL2GAnnotation.setStrand(MobyString strand)
           
 void ExpressionCore.setStructureID(MobyString structureID)
           
 void BasicAnnotation.setTerm(MobyString term)
           
 void InteractionMethod.setTerm(MobyString term)
           
 void ExpressionCore.setTheilerStage(MobyString theilerStage)
           
 void ArrayXYData.setTitle(MobyString title)
           
 void OMIM.setTitle(MobyString title)
           
 void MultiParameter.setType(MobyString type)
           
 void ENSEMBLHomolog.setType(MobyString type)
           
 void FeatureAnnotation.setType(MobyString type)
           
 void Parameter.setType(MobyString type)
           
 void BL2GAnnotation.setType(MobyString type)
           
 void ElementString.setValue(MobyString value)
           
 void Parameter.setValue(MobyString value)
           
 void ArrayXYData.setXtitle(MobyString xtitle)
           
 void ArrayXYData.setYtitle(MobyString ytitle)
           
 

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