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Version: 1.1.1 | |||||||||
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| ca.ucalgary.* |
|---|
| ca.ucalgary.minnow.MinJarMaker | ||
|---|---|---|
public static final String |
MANIFEST_MAIN_CLASS_PROPERTY |
"minnow.manifest.main.class" |
public static final String |
MANIFEST_PATH |
"META-INF/MANIFEST.MF" |
| ca.ucalgary.seahawk.gui.DataImportChoiceDialog | ||
|---|---|---|
public static final int |
MAX_ITEM_DESC_WIDTH |
50 |
| ca.ucalgary.seahawk.gui.FilterSearchWidget | ||
|---|---|---|
public static final String |
CASE_INSENSITIVE_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/case_insensitive.png" |
public static final String |
CASE_SENSITIVE_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/case_sensitive.png" |
| ca.ucalgary.seahawk.gui.MobyContentClipboard | ||
|---|---|---|
public static final String |
CLEAR_CLIPBOARD_OPTION |
"Clear Clipboard" |
public static final String |
CLIPBOARD_COLLECTION_NAME |
"Clipboard Collection" |
public static final String |
CLIPBOARD_FILE_NAME |
"SeaHawkClipboard" |
public static final String |
CLIPBOARD_QUERY_NAME |
"Clipboard" |
public static final String |
CLIPBOARD_TAB_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/clipboard.gif" |
public static final String |
CLIPBOARD_TAB_NAME |
"Clipboard" |
| ca.ucalgary.seahawk.gui.MobyContentGUI | ||
|---|---|---|
public static final String |
BACK_BUTTON_NAME |
"MCGbackButton" |
public static final String |
CLIPBOARD_TAB_TOOLTIP |
"Right-click for clipboard options" |
public static final String |
CLOSE_OTHERS_OPTION |
"Close Other Tabs" |
public static final String |
CLOSE_TAB_OPTION |
"Close This Tab" |
public static final String |
DEFAULT_STARTUP_PAGE_RESOURCE |
"ca/ucalgary/seahawk/resources/startup.html" |
public static final String |
DEFAULT_STATUS_MSG |
"Click hyperlink to explore MOBY Web services " |
public static final String |
DEFAULT_XSLT_CONVERTER_URL |
"ca/ucalgary/seahawk/resources/moby2HTML.xsl" |
public static final String |
FILE_CHOOSER_OPEN_TITLE |
"Load data from file" |
public static final String |
FILE_OPEN_OPTION |
"Open File" |
public static final String |
FILE_OPEN_OPTION_NAME |
"MCGopenPopupFileOption" |
public static final String |
FILTER_BUTTON_NAME |
"MCGfilterButton" |
public static final String |
FORWARD_BUTTON_MSG |
"Go to next document in this tab\'s history" |
public static final String |
FORWARD_BUTTON_NAME |
"MCGforwardButton" |
public static final String |
HELP_BUTTON_NAME |
"MCGhelpButton" |
public static final int |
MAX_TAB_NAME_LENGTH |
25 |
public static final String |
OPEN_BUTTON_NAME |
"MCGopenButton" |
public static final String |
OPEN_OPTION_NAME |
"MCGopenPopup" |
public static final String |
PRINT_BUTTON_NAME |
"MCGprintButton" |
public static final String |
RESOURCE_SYSTEM_PROPERTY |
"seahawk.stylesheet" |
public static final String |
SAVE_BUTTON_NAME |
"MCGsaveButton" |
public static final String |
SEAHAWK_NS_PREFIX |
"seahawk" |
public static final String |
SEAHAWK_NS_URI |
"http://moby.ucalgary.ca/seahawk" |
public static final String |
SEAHAWK_XPATH_ATTR |
"xpath" |
public static final String |
SERVICE_INPUT_MAGIC |
"#!" |
public static final String |
SETTINGS_BUTTON_NAME |
"MCGsettingsButton" |
public static final String |
TAB_TOOLTIP |
"Right-click for tab options, or Ctrl-T for new tab" |
public static final String |
TABBED_PANE_NAME |
"MCGtabbedPane" |
public static final String |
WEB_ADDR_DIALOG_TITLE |
"Load Data From A Web Address (URL)" |
public static final String |
WEB_OPEN_OPTION |
"Open Web Page" |
public static final String |
WEB_OPEN_OPTION_NAME |
"MCGopenPopupWebOption" |
| ca.ucalgary.seahawk.gui.MobyContentHelpPane | ||
|---|---|---|
public static final String |
HELP_HTML_RESOURCE |
"ca/ucalgary/seahawk/resources/MobyContentGUIHelp.html" |
public static final String |
HELP_TAB_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/help_tab.gif" |
public static final String |
HELP_TAB_NAME |
"Help Page" |
| ca.ucalgary.seahawk.gui.MobyContentPane | ||
|---|---|---|
public static final String |
FAILED_TAB_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/failed.gif" |
public static final String |
LOADED_TAB_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/document.gif" |
public static final String |
MOBY_SERVICE_POPUP_NAME |
"seahawkServicePopup" |
public static final String |
SERVICE_CREATION_MSG |
"Create a service returning this datatype" |
public static final String |
WAITING_TAB_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/hourglass.gif" |
public static final String |
WRAPPING_RESULTFILE_PREFIX |
"wrapping_results_parsed" |
public static final String |
XSL_DOC_SOURCE_PARAM |
"sourceURL" |
| ca.ucalgary.seahawk.gui.MobyDataObjectWidget | ||
|---|---|---|
public static final String |
INSTANTIATED_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/checkmark.gif" |
public static final int |
MAX_DATA_DESC |
30 |
public static final int |
PARAM_TOOLTIP_WIDTH |
50 |
public static final String |
UNINSTANTIATED_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/attention.gif" |
| ca.ucalgary.seahawk.gui.MobySaveDialog | ||
|---|---|---|
public static final String |
CSV_DESC |
"CSV (Comma Separated Values)" |
public static final String |
CSV_EXT |
".csv" |
public static final String |
CSV_MIME |
"text/csv" |
public static final String |
CSV_MIME2 |
"text/comma-separated-values" |
public static final String |
DOC_DESC |
"DOC (Microsoft Word Format)" |
public static final String |
DOC_EXT |
".doc" |
public static final String |
DOC_MIME |
"application/msword" |
public static final String |
DOC_MIME2 |
"application/vnd.ms-word" |
public static final String |
FILE_CHOOSER_SAVE_TITLE |
"Save Current Tab To File" |
public static final String |
HTML_DESC |
"HTML (Web Page)" |
public static final String |
HTML_EXT |
".html" |
public static final String |
ODP_DESC |
"ODP (Open Document Presentation)" |
public static final String |
ODP_EXT |
".odp" |
public static final String |
ODP_MIME |
"application/vnd.oasis.opendocument.presentation" |
public static final String |
ODS_DESC |
"ODS (Open Document Spreadsheet)" |
public static final String |
ODS_EXT |
".ods" |
public static final String |
ODS_MIME |
"application/vnd.oasis.opendocument.spreadsheet" |
public static final String |
ODT_DESC |
"ODT (Open Document Text)" |
public static final String |
ODT_EXT |
".odt" |
public static final String |
ODT_MIME |
"application/vnd.oasis.opendocument.text" |
public static final String |
PDF_DESC |
"PDF (Portable Document Format)" |
public static final String |
PDF_EXT |
".pdf" |
public static final String |
PPT_DESC |
"PPT (Microsoft PowerPoint Format)" |
public static final String |
PPT_EXT |
".ppt" |
public static final String |
PPT_MIME |
"application/mspowerpoint" |
public static final String |
PPT_MIME2 |
"application/vnd.ms-powerpoint" |
public static final String |
RTF_DESC |
"RTF (Rich Text Format)" |
public static final String |
RTF_EXT |
".rtf" |
public static final String |
T2FLOW_DESC |
"Workflow Macro (Taverna format)" |
public static final String |
T2FLOW_EXT |
".t2flow" |
public static final String |
TEX_DESC |
"TEX (TeX Typesetting File)" |
public static final String |
TEX_EXT |
".tex" |
public static final String |
TSV_DESC |
"TSV (Tab Separated Values)" |
public static final String |
TSV_EXT |
".tsv" |
public static final String |
TXT_DESC |
"TXT (Plain Text Format)" |
public static final String |
TXT_EXT |
".txt" |
public static final String |
WPD_DESC |
"WPD (WordPerfect Format)" |
public static final String |
WPD_EXT |
".wpd" |
public static final String |
XLS_DESC |
"XLS (Microsoft Excel Format)" |
public static final String |
XLS_EXT |
".xls" |
public static final String |
XLS_MIME |
"application/msexcel" |
public static final String |
XLS_MIME2 |
"application/vnd.ms-excel" |
public static final String |
XML_DESC |
"XML (MOBY data envelope format)" |
public static final String |
XML_EXT |
".xml" |
| ca.ucalgary.seahawk.gui.MobySecondaryInputGUI | ||
|---|---|---|
public static final int |
DEFAULT_TEXT_SIZE |
12 |
public static final int |
INT_CHOICE_MAX |
100 |
public static final int |
MAX_TOOLTIP_WIDTH |
40 |
public static final String |
OK_BUTTON_NAME |
"MSIGexecuteButton" |
public static final String |
TITLE |
"Inputs for Moby Service" |
public static final String |
UNBOUNDED_FLOAT_RANGE_DESC |
"[decimal number]" |
public static final String |
UNBOUNDED_INT_RANGE_DESC |
"[integer]" |
| ca.ucalgary.seahawk.gui.MobyServicesGUI | ||
|---|---|---|
public static final String |
CLIPBOARD_CMD |
"clipboard" |
public static final String |
CLIPBOARD_LABEL |
"Add to clipboard" |
public static final int |
MAX_ID_LEN |
30 |
public static final int |
MAX_SERVICE_DESC_LEN |
50 |
public static final int |
MAX_SERVICES_PER_SUBMENU |
12 |
public static final String |
SEARCH_LABEL |
"Find service by keyword..." |
public static final String |
SERVICE_SUBMENU_NAME |
"seahawkPopupSubMenuName" |
public static final String |
SERVICESEARCH_CMD |
"service_search" |
public static final int |
USE_DEFAULT_HANDLER_MASK |
1 |
public static final int |
USE_DEFAULT_SECONDARIES_MASK |
2 |
| ca.ucalgary.seahawk.gui.MobyShimmer | ||
|---|---|---|
public static final String |
MOBY_SHIM_SERVICE_TYPE |
"FormatConversion" |
| ca.ucalgary.seahawk.gui.SeahawkOptionsGUI | ||
|---|---|---|
public static final String |
CUSTOM_REGISTRY_DESC |
"User-defined MOBY Central registry." |
public static final String |
CUSTOM_REGISTRY_SYNONYM |
"Custom (set your own location & namespace)" |
public static final boolean |
DIALOG_MODAL |
true |
public static final String |
DIALOG_TITLE |
"Seahawk User Preferences" |
| ca.ucalgary.seahawk.gui.ServiceSearchDialog | ||
|---|---|---|
public static final int |
MAX_ITEM_DESC_WIDTH |
50 |
| ca.ucalgary.seahawk.gui.WorkflowPreviewDialog | ||
|---|---|---|
public static final String |
AUTHOR_HINT |
"Author name?" |
public static final String |
DESC_HINT |
"Enter a description of what the workflow does here" |
public static final String |
PNG_GENERATOR_PARAM |
"workflow" |
public static final String |
PNG_GENERATOR_URL |
"http://bioxml.info/authority/t2diagram.cgi" |
public static final String |
TITLE_HINT |
"Untitled workflow" |
| ca.ucalgary.seahawk.services.MobyClient | ||
|---|---|---|
public static final String |
ARTICLENAME_RULE_TAG |
"articlename" |
public static final String |
DATA_MAPPING_XML_RESOURCE |
"ca/ucalgary/seahawk/resources/mobyBuilderRules.xml" |
public static final String |
DATATYPE_ATTR |
"datatype" |
public static final String |
DATATYPE_RULE_ATTR |
"value" |
public static final String |
DATATYPE_RULE_TAG |
"datatype" |
public static final String |
ENCODING_ATTR |
"encoding" |
public static final String |
ENCODING_ATTR_BASE64_VAL |
"Base64" |
public static final String |
ENCODING_ATTR_NONE_VAL |
"none" |
public static final String |
IS_ALIVE_SERVICE_URL |
"http://moby.ucalgary.ca/moby/ValidateService" |
public static final String |
MEMBER_RULE_ATTR |
"value" |
public static final String |
MEMBER_RULE_TAG |
"member" |
public static final String |
MEMBERS_RULE_ATTR |
"rule" |
public static final String |
MEMBERS_RULE_TAG |
"inheritMembers" |
public static final String |
NAMESPACE_MODEL_ATTR |
"model" |
public static final String |
NAMESPACE_RULE_TAG |
"namespace" |
public static final String |
NAMESPACE_VALUE_ATTR |
"value" |
public static final String |
NAMESPACE_VALUE_TAG |
"ns" |
public static final String |
PREFIX_ATTR |
"value" |
public static final String |
PREFIX_TAG |
"prefix" |
public static final String |
REGEX_TAG |
"regex" |
public static final String |
RESOURCE_SYSTEM_PROPERTY |
"seahawk.rules" |
public static final String |
RULE_NAME_ATTR |
"name" |
public static final String |
RULE_SET_TAG |
"object" |
public static final String |
SINGLE_RETURNED_VALUE_KEY |
"_no_acd_param_should_have_this_name" |
public static final String |
URL_REGEX_TAG |
"url_regex" |
public static final String |
WHITESPACE_ATTR |
"whitespace" |
public static final String |
WHITESPACE_ATTR_KEEP_VAL |
"keep" |
public static final String |
WHITESPACE_ATTR_NORMALIZE_VAL |
"normalize" |
public static final String |
WHITESPACE_ATTR_STRIP_FLANKING_VAL |
"flanking" |
public static final String |
WHITESPACE_ATTR_STRIP_VAL |
"strip" |
public static final String |
XPATH_TAG |
"xpath" |
| ca.ucalgary.seahawk.services.MobyComplexBuilder | ||
|---|---|---|
public static final String |
ANON_ARTICLE |
"_seahawk_data" |
public static final String |
INHERITED_MEMBERS_SENTINEL |
"_seahawk_member_inheritance" |
public static final String |
PRIMITIVE_VALUE_SENTINEL |
"__prim_field" |
| ca.ucalgary.seahawk.services.TextClient | ||
|---|---|---|
public static final String |
DATA_MAPPING_XSLT_RESOURCE |
"ca/ucalgary/seahawk/resources/mobyRules.xsl" |
public static final String |
RESOURCE_SYSTEM_PROPERTY |
"seahawk.textrules" |
public static final String |
XSLT_MODE_VAR |
"selectedACDTypeTarget" |
public static final String |
XSLT_NS |
"http://www.w3.org/1999/XSL/Transform" |
| ca.ucalgary.seahawk.services.test.MobyClientTestCase | ||
|---|---|---|
public static final String |
TEST_HASDATA |
"fee fie\tfoe\tfum\ndee\n" |
public static final String |
TEST_HASDATA_CLASSNAME |
"tableRow" |
public static final String |
TEST_HASDATA_MEMBERNAME |
"cell" |
public static final String |
TEST_HASDATA_MEMBERS1_CLASS |
"String" |
public static final int |
TEST_HASDATA_MEMBERS1_COUNT |
4 |
public static final int |
TEST_HASDATA_MEMBERS2_COUNT |
1 |
public static final int |
TEST_HASDATA_NUMOBJS |
2 |
public static final String |
TEST_INHERIT_CLASSNAME |
"table" |
public static final int |
TEST_INHERIT_NUMOBJS |
1 |
public static final String |
TEST_INHERITMEMBER_CLASSNAME |
"ProteinChargeTable" |
public static final int |
TEST_INHERITMEMBER_NUMOBJS |
1 |
public static final String |
TEST_INHERITMEMBER_RESOURCE |
"ca/ucalgary/seahawk/services/test/embossChargeOutput.txt" |
public static final String |
TEST_RULES_RESOURCE1 |
"ca/ucalgary/seahawk/services/test/mobyRules1.xml" |
public static final String |
TEST_RULES_RESOURCE2 |
"ca/ucalgary/seahawk/services/test/mobyRules2.xml" |
public static final String |
TEST_RULES_RESOURCE3 |
"ca/ucalgary/seahawk/services/test/mobyRules3.xml" |
| ca.ucalgary.seahawk.services.test.RegexParserTestCase | ||
|---|---|---|
public static final String |
TEST_CAPGRP1 |
"\\S+(\\x20{2,}|\t+|)" |
public static final String |
TEST_CAPGRP2 |
"\\x20{2,}|\t+|" |
public static final String |
TEST_CAPGRP2_1 |
"(?:(\\d+)\\s+-?\\((\\d+\\.\\d+)\\)\n)+" |
public static final String |
TEST_CAPGRP2_2 |
"\\d+" |
public static final String |
TEST_CAPGRP2_3 |
"\\d+\\.\\d+" |
public static final int |
TEST_CAPGRP3_RANGE_END |
21 |
public static final int |
TEST_CAPGRP3_RANGE_START |
6 |
public static final int |
TEST_CAPGRP4_RANGE_END |
18 |
public static final int |
TEST_CAPGRP4_RANGE_START |
6 |
public static final int |
TEST_CAPGRP5_RANGE_END |
17 |
public static final int |
TEST_CAPGRP5_RANGE_START |
6 |
public static final String |
TEST_DATA1 |
"1\t2\t3\t4\n1\'\t2\'\t3\'\u0004\'\n" |
public static final String |
TEST_DATA2 |
"100 (101.3)\n" |
public static final String |
TEST_REGEX1 |
"\\A\\s*(\\S+(\\x20{2,}|\t+|))+\n" |
public static final String |
TEST_REGEX2 |
"((?:(\\d+)\\s+-?\\((\\d+\\.\\d+)\\)\n)+)" |
public static final String |
TEST_REGEX3 |
"foo\\s+(ba(r|z)\\s+){2}?qux" |
public static final String |
TEST_REGEX4 |
"foo\\s+(ba(r|z)\\s+)+qux" |
public static final String |
TEST_REGEX5 |
"foo\\s+(ba(r|z)\\s+)qux" |
| ca.ucalgary.seahawk.util.CloseTabIcon | ||
|---|---|---|
public static final String |
CLOSE_TAB_ICON_RESOURCE |
"ca/ucalgary/seahawk/resources/images/tabclose.gif" |
| ca.ucalgary.seahawk.util.CombinedIcon | ||
|---|---|---|
public static final int |
HORIZONTAL |
0 |
public static final int |
VERTICAL |
1 |
| ca.ucalgary.seahawk.util.DataFlowRecorder | ||
|---|---|---|
public static final int |
T2FLOW |
169 |
public static final String |
T2FLOW_DISPATCHXML |
"ca/ucalgary/seahawk/resources/t2flowDispatchStack.xml" |
public static final String |
T2FLOW_LISTFLATTEN_BEANSHELL |
"ca/ucalgary/seahawk/resources/FlattenListBeanShell" |
public static final String |
T2FLOW_NS |
"http://taverna.sf.net/2008/xml/t2flow" |
public static final String |
T2FLOW_PASSFILTER_BEANSHELL |
"ca/ucalgary/seahawk/resources/PassFilterBeanShell" |
public static final String |
T2FLOW_REGEXFILTER_BEANSHELL |
"ca/ucalgary/seahawk/resources/RegexFilterBeanShell" |
public static final String |
T2FLOW_XPATHFILTER_BEANSHELL |
"ca/ucalgary/seahawk/resources/XPathFilterBeanShell" |
public static final int |
TAVERNA15 |
167 |
| ca.ucalgary.seahawk.util.DataUtils | ||
|---|---|---|
public static final String |
ARTICLE_PEERS_MODE |
"article_peers" |
public static final String |
DATATYPE_PEERS_MODE |
"datatype_peers" |
public static final String |
INPUTSRC_ATTR |
"source" |
public static final String |
PI_TARGET |
"seahawk" |
public static final String |
REGISTRY_ATTR |
"registry" |
public static final String |
SERVICEID_ATTR |
"service" |
public static final String |
SERVICEINPUT_ATTR |
"input" |
public static final String |
TEMP_FILE_PREFIX |
"seahawk" |
| ca.ucalgary.seahawk.util.FilterSearch | ||
|---|---|---|
public static final String |
SELECT_ALL_XPATH |
"//* | //*/@*" |
| ca.ucalgary.seahawk.util.HTMLUtils | ||
|---|---|---|
public static final String |
ACCEPTABLE_IMAGE_DATATYPE |
"WebFormatImage" |
public static final String |
BINARY_DATA_LABEL |
"[binary data not shown]" |
| ca.ucalgary.seahawk.util.MobyUtils | ||
|---|---|---|
public static final int |
MAX_OBJ_NAME_LEN |
18 |
| ca.ucalgary.seahawk.util.SeahawkOptions | ||
|---|---|---|
public static final String |
CACHE_POLICY_PROP |
"cacheExpiryInHours" |
public static final String |
CONVERTER_HOST_PROP |
"documentConverterHost" |
public static final String |
CONVERTER_PORT_PROP |
"documentConverterPort" |
public static final String |
CUSTOM_REGISTRY_SYNONYM |
"custom" |
public static final String |
PROPS_FILE_COMMENT |
"This is the only file Seahawk stores on your system indefinitely.\nIf you delete it, your preferences will be reset the next time you run Seahawk." |
public static final String |
PROPS_FILE_ENCODING |
"UTF-8" |
public static final String |
PROPS_FILE_NAME |
"seahawkUserPrefs.xml" |
public static final String |
PROPS_FILE_SYS_PROPERTY |
"seahawk.prefs" |
public static final String |
REFERRER_POLICY_PROP |
"sendReferrerHeader" |
public static final String |
REGISTRY_ENDPOINT_PROP |
"registryEndpoint" |
public static final String |
REGISTRY_NAMESPACE_PROP |
"registryNamespace" |
public static final String |
REGISTRY_SYNONYM_PROP |
"registrySynonym" |
public static final String |
TEMP_DIR_PROP |
"tempDataDir" |
| ca.ucalgary.services.ACDService | ||
|---|---|---|
public static final String |
ACD_FILE_PARAM |
"acdFile" |
public static final String |
EMBOSS_ADV_PARAMS_PARAM |
"embossUseAdvancedParams" |
public static final String |
EMBOSS_OUTPUT_PARAM |
"embossOutput" |
public static final String |
EMBOSS_PARAMS_PARAM |
"embossParams" |
public static final String |
EMBOSS_ROOT_PARAM |
"embossRoot" |
| ca.ucalgary.services.CGIService | ||
|---|---|---|
public static final String |
CGISERVICE_USERAGENT_NAME |
"BioMoby CGIService Servlet" |
public static final String |
HTML_FORM_URL_PARAM |
"htmlFormURL" |
| ca.ucalgary.services.CGIServlet | ||
|---|---|---|
public static final String |
HIDDEN_PARAM |
"_CGIServlet_hidden_params" |
| ca.ucalgary.services.LegacyService | ||
|---|---|---|
public static final String |
MOBY_RULES_DEFAULT_RESOURCE |
"ca/ucalgary/services/resources/mobyRules.xsl" |
public static final String |
MOBY_RULES_LOCATION_PARAM |
"demRulesLoc" |
public static final String |
TEXT_RULES_DEFAULT_RESOURCE |
"ca/ucalgary/services/resources/acdRules.xml" |
public static final String |
TEXT_RULES_LOCATION_PARAM |
"mobRulesLoc" |
| ca.ucalgary.services.Registration | ||
|---|---|---|
public static final String |
FIXED_PARAMS |
"inputs_fixed" |
public static final String |
INPUT_RULE_URIS_PARAM |
"inputs_primary_ruleURIs" |
public static final String |
INPUT_XSD_TYPES_PARAM |
"inputs_xsd_types" |
public static final String |
INPUTS_PARAM |
"inputs_primary" |
public static final String |
MOBY_AUTHOR_PARAM |
"mobyServiceAuthor" |
public static final String |
MOBY_AUTHORITY_PARAM |
"mobyServiceAuthority" |
public static final String |
MOBY_CENTRAL_PARAM |
"mobyCentral" |
public static final String |
MOBY_DESC_PARAM |
"mobyServiceDesc" |
public static final String |
MOBY_NOTES_PARAM |
"mobyNotes" |
public static final String |
MOBY_SERVICENAME_PARAM |
"mobyServiceName" |
public static final String |
MOBY_SERVICETYPE_PARAM |
"mobyServiceType" |
public static final String |
OP_PARAM |
"op" |
public static final String |
OP_SPEC_DOC_PARAM |
"specDoc" |
public static final String |
OUTPUT_RULE_URIS_PARAM |
"outputs_ruleURIs" |
public static final String |
OUTPUT_XSD_TYPES_PARAM |
"outputs_xsd_types" |
public static final String |
OUTPUTS_PARAM |
"outputs" |
public static final String |
SECONDARIES_PARAM |
"inputs_secondary" |
public static final String |
SECONDARY_RULE_URIS_PARAM |
"inputs_secondary_ruleURIs" |
public static final String |
SPEC_URL |
"specURL" |
public static final String |
TARGET_NSURI_PARAM |
"target_ns_uri" |
public static final String |
TEST_INPUT_PARAM |
"test_input" |
public static final String |
TEST_XPATH_PARAM |
"test_xpath" |
| ca.ucalgary.services.SoapServlet | ||
|---|---|---|
public static final String |
DOC_PARAM_SENTINEL |
"_is_doc_style" |
public static final String |
INDENTATION_XSL_RESOURCE |
"ca/ucalgary/services/resources/indent.xsl" |
| ca.ucalgary.services.WrappingServlet | ||
|---|---|---|
public static final String |
DATARECORDER_CONTEXTPARAM |
"dataRecorder" |
public static final String |
ID_PARAM |
"seahawkId" |
public static final String |
SERVICE_SPEC_PARAM |
"service" |
public static final String |
SRC_PARAM |
"srcSpec" |
| ca.ucalgary.services.WSDLService | ||
|---|---|---|
public static final String |
WSDL_URL_PARAM |
"wsdlURL" |
| ca.ucalgary.services.util.ACDFile | ||
|---|---|---|
public static final String |
BLOCK_NAME_KEY |
"_blockname" |
public static final String |
BLOCK_TYPE_KEY |
"_blocktype" |
| ca.ucalgary.services.util.DataRecorder | ||
|---|---|---|
public static final String |
PASSTHROUGH_ACTION |
"_dataAction" |
| ca.ucalgary.services.util.PBERecorder | ||
|---|---|---|
public static final String |
AUTOCOMPLETE_PARAM |
"autocomplete" |
public static final String |
CONTEXT_XPTR_PARAM |
"contextXPtr" |
public static final String |
CUSTOM_INPUT_PART_OPTION |
"Specify a list of possible values..." |
public static final String |
CUSTOM_INPUT_PART_VALUES_SUFFIX |
"_vals" |
public static final String |
CUSTOM_VALUE_XPATH_OPTION |
"Create a custom XPath" |
public static final String |
DATE_INPUT_PART_OPTION |
"Specify a date range..." |
public static final String |
FLOAT_INPUT_PART_OPTION |
"Specify a decimal number range..." |
public static final String |
INT_INPUT_PART_OPTION |
"Specify an integer range..." |
public static final String |
LIST_CHOICE_PARAM |
"choice" |
public static final String |
OUTPUT_RULE_URI_PARAM |
"outRuleURI" |
public static final String |
RAW_XPATH_PARAM |
"rawNode" |
public static final String |
RESOURCE_FILE_PARAM |
"_resource" |
public static final String |
RESOURCE_PREFIX |
"ca/ucalgary/services/resources/" |
public static final String |
RETURN_XPATH_PARAM |
"ret" |
public static final String |
SCALAR_INPUT_PART_MAX_SUFFIX |
"_max" |
public static final String |
SCALAR_INPUT_PART_MIN_SUFFIX |
"_min" |
public static final String |
VALUE_XPATH_PARAM |
"val" |
public static final String |
XPATH_DEFAULT_NS_PREFIX |
"t" |
| ca.ucalgary.services.util.RuleCreator | ||
|---|---|---|
public static final String |
DATA_CONTENTS_PARAM |
"data" |
public static final String |
LIFTING_SCHEMA_PATH |
"mobyLiftingSchemaMapping" |
public static final String |
LOWERING_SCHEMA_PATH |
"mobyLoweringSchemaMapping" |
public static final String |
METADATA_CONTENTS_PARAM |
"metadata" |
public static final String |
RULE_CONTENTS_PARAM |
"contents" |
public static final String |
RULESTORE_URL |
"http://bioxml.info/authority/store.cgi/" |
| ca.ucalgary.services.util.WSDLConfig | ||
|---|---|---|
public static final String |
DEFAULT_AUTHORITY |
"biomoby.org" |
public static final String |
MOBY_SECONDARY_SOURCE_ATTR |
"secondaryParamSource" |
public static final String |
REGISTRY_ATTR |
"registryEndpoint" |
public static final String |
SAWSDL_INMAP_ATTR |
"loweringSchemaMapping" |
public static final String |
SAWSDL_MODEL_ATTR |
"modelReference" |
public static final String |
SAWSDL_OUTMAP_ATTR |
"liftingSchemaMapping" |
public static final String |
SERVICE_AUTH_ATTR |
"serviceAuthority" |
public static final String |
SERVICE_CONTACT_ATTR |
"serviceContact" |
public static final String |
SERVICE_DESC_ATTR |
"serviceDesc" |
public static final String |
SERVICE_NAME_ATTR |
"serviceName" |
| ca.ucalgary.services.util.XHTMLForm | ||
|---|---|---|
public static final String |
HIDDEN_SENTINEL |
"noRealHiddenOrAnyFormFieldShouldHaveThisValuePlease!" |
public static final String |
IMAGE_ANONYMOUS_NAME |
"noRealImageButtonShouldHaveThisNamePlease!" |
public static final String |
IMAGE_DATATYPE |
"image" |
public static final String |
METHOD_GET |
"GET" |
public static final String |
METHOD_POST |
"POST" |
public static final String |
MULTIPART |
"multipart/form-data" |
public static final String |
NULL_NAME |
"null" |
public static final String |
RADIO_DEFAULT_SENTINEL |
"2noRealRadioOrAnyFormFieldShouldHaveThisValuePlease!" |
public static final String |
RADIO_SENTINEL |
"noRealRadioOrAnyFormFieldShouldHaveThisValuePlease!" |
public static final String |
SUBMIT_ANONYMOUS_NAME |
"noRealSubmitButtonShouldHaveThisNamePlease!" |
public static final String |
SUBMIT_DATATYPE |
"submit" |
public static final String |
SUBMIT_DEFAULT_VALUE |
"Submit Query" |
public static final String |
URLENCODED |
"application/x-www-form-urlencoded" |
| org.biomoby.* |
|---|
| org.biomoby.client.AsyncClient | ||
|---|---|---|
public static final String |
CONTENT_TYPE |
"text/xml; charset=UTF-8" |
public static final String |
MOBY_RESULT_PROPERTY_PREFIX |
"result_" |
public static final String |
MOBY_SERVICE_INVOC_ID_TAG_NAME |
"ServiceInvocationId" |
public static final String |
USER_AGENT |
"jBioMOBY_async_client/0.5" |
public static final String |
WS_ADDRESSING_TO_TAG_NAME |
"To" |
public static final String |
WSRP_MULTI_PROPERTY_TAG_NAME |
"GetMultipleResourceProperties" |
public static final String |
WSRP_PROPERTY_TAG_NAME |
"ResourceProperty" |
| org.biomoby.client.CentralImpl | ||
|---|---|---|
public static final String |
CENTRAL_IMPL_RESOURCE_NAME |
"org.biomoby.client.CentralImpl" |
public static final String |
DEFAULT_CENTRAL_IMPL_CLASSNAME |
"org.biomoby.client.CentralDigestCachedImpl" |
public static final String |
DEFAULT_ENDPOINT |
"http://moby.ucalgary.ca/moby/MOBY-Central.pl" |
public static final String |
DEFAULT_NAMESPACE |
"http://moby.ucalgary.ca/MOBY/Central" |
| org.biomoby.client.GraphsServlet | ||
|---|---|---|
public static final String |
ONCHANGE |
"onChange" |
| org.biomoby.client.Graphviz | ||
|---|---|---|
public static final String |
PROP_HIGHLIGHT |
"highlight" |
public static final String |
PROP_HIGHLIGHT_COLOR |
"highlightcolor" |
public static final String |
PROP_IMAGEMAP |
"imagemap" |
public static final String |
PROP_RANKDIR |
"rankdir" |
| org.biomoby.client.RDF | ||
|---|---|---|
public static final String |
PREDICATE_HAS_INPUT |
"hasInput" |
public static final String |
PREDICATE_HAS_OUTPUT |
"hasOutput" |
| org.biomoby.client.ServicesEdge | ||
|---|---|---|
public static final int |
BOTH_COLLECTIONS_CONNECTION |
4 |
public static final int |
HEAD_COLLECTION_CONNECTION |
2 |
public static final int |
NO_CONNECTION |
0 |
public static final int |
NO_OUTPUT |
5 |
public static final String |
NS_DIVIDER |
"/" |
public static final int |
SIMPLE_CONNECTION |
1 |
public static final int |
TAIL_COLLECTION_CONNECTION |
3 |
| org.biomoby.client.Taverna | ||
|---|---|---|
public static final String |
PROP_RAWINPUT |
"rawinput" |
public static final String |
PROP_RAWOUTPUT |
"rawoutput" |
public static final String |
PROP_VERBOSE |
"tverbose" |
| org.biomoby.client.rdf.vocabulary.DC_PROTEGE | ||
|---|---|---|
public static final String |
NS |
"http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl#" |
| org.biomoby.client.rdf.vocabulary.FetaVocabulary | ||
|---|---|---|
public static final String |
NS |
"http://www.mygrid.org.uk/mygrid-moby-service#" |
| org.biomoby.client.rdf.vocabulary.XMLTypes | ||
|---|---|---|
public static final String |
XSD_DATE_TIME |
"xs:dateTime" |
public static final String |
XSD_FLOAT |
"xs:float" |
public static final String |
XSD_INTEGER |
"xs:integer" |
public static final String |
XSD_STRING |
"xs:string" |
| org.biomoby.registry.meta.Registries | ||
|---|---|---|
public static final String |
DEFAULT_REGISTRY_SYNONYM |
"default" |
| org.biomoby.registry.meta.RegistryCache | ||
|---|---|---|
public static final String |
CALL_CACHE_FILE_PREFIX |
"mobyCtrCall" |
public static final String |
REG_CACHE_FILE_PREFIX |
"mobyCtrRDF" |
| org.biomoby.registry.rdfagent.util.Constants | ||
|---|---|---|
public static final String |
CONFIG_FILE |
"RDFagent_config.txt" |
| org.biomoby.registry.sync.logging.MobySecondaryLogging | ||
|---|---|---|
public static final String |
LOGGER_NAME |
"mobysync" |
| org.biomoby.service.MobyServlet | ||
|---|---|---|
public static final String |
ADMIN_MODE |
"admin" |
public static final int |
INIT_OUTPUT_BUFFER_SIZE |
100000 |
public static final String |
MOBY_AUTHORITATIVE_PARAM |
"mobyAuthoritative" |
public static final String |
MOBY_CENTRAL_URL_PARAM |
"mobyCentralURL" |
public static final String |
MOBY_CONTACT_PARAM |
"mobyAuthorContact" |
public static final String |
MOBY_INPUT_PARAM |
"mobyInput" |
public static final String |
MOBY_OUTPUT_PARAM |
"mobyOutput" |
public static final String |
MOBY_PROVIDER_URI_PARAM |
"mobyProviderURI" |
public static final String |
MOBY_SECONDARYINPUT_PARAM |
"mobySecondaryInput" |
public static final String |
MOBY_SERVICE_DESC_PARAM |
"mobyServiceDescription" |
public static final String |
MOBY_SERVICENAME_PARAM |
"mobyServiceName" |
public static final String |
MOBY_SERVICETYPE_PARAM |
"mobyServiceType" |
public static final String |
MODE_HTTP_PARAM |
"mode" |
public static final String |
RDF_MODE |
"rdf" |
| org.biomoby.service.dashboard.AntModel | ||
|---|---|---|
public static final int |
MSG_DEBUG |
4 |
public static final int |
MSG_INFO |
2 |
public static final int |
MSG_QUIET |
100 |
public static final int |
MSG_VERBOSE |
3 |
| org.biomoby.service.dashboard.CommonConsole | ||
|---|---|---|
public static final String |
VERBOSE_EVENT |
"verbose-msg" |
| org.biomoby.service.dashboard.CommonDataTable | ||
|---|---|---|
public static final int |
COL_BUTTON |
0 |
| org.biomoby.service.dashboard.CommonNode | ||
|---|---|---|
public static final int |
NODE_AUTHORITY |
15 |
public static final int |
NODE_DATA_TYPE |
11 |
public static final int |
NODE_NAMESPACE |
12 |
public static final int |
NODE_SERVICE |
14 |
public static final int |
NODE_SERVICE_TYPE |
13 |
| org.biomoby.service.dashboard.DashboardConfig | ||
|---|---|---|
public static final String |
DASHBOARD_CONFIG_FILENAME |
"dashboard.properties" |
public static final String |
PROP_DASHBOARD_CONFIGURATION |
"dashboard.configuration" |
| org.biomoby.service.dashboard.DashboardProperties | ||
|---|---|---|
public static final String |
DP_ANT_MODEL |
"dp-ant-model" |
public static final String |
DP_AUTHENTICATION |
"service-authentication" |
public static final String |
DP_AXIS_ADMIN |
"axisAdminURLPath" |
public static final String |
DP_AXIS_IN_TOMCAT |
"axisInTomcat" |
public static final String |
DP_BGCOLOR |
"dashboard.bgcolor" |
public static final String |
DP_CACHE_DIR |
"dp-cache-dir" |
public static final String |
DP_CALL_SERVICE |
"howToCallService" |
public static final String |
DP_CBS_DEPLOY |
"copy-by-select-deploy" |
public static final String |
DP_CONSOLE_FILE |
"dp-cons-savefile" |
public static final String |
DP_CONTACT |
"dashboard.contact" |
public static final String |
DP_CS_CLASS |
"local-class" |
public static final String |
DP_CS_NEWURL |
"service-new-endpoint" |
public static final String |
DP_CS_NONE |
"no-call" |
public static final String |
DP_CS_REGISTRY |
"as-registered" |
public static final String |
DP_CS_URL |
"service-endpoint" |
public static final String |
DP_DATATYPE_NAME |
"dp-datatype-name" |
public static final String |
DP_DEFAULT_REGISTRY |
"dashboard.default.registry" |
public static final String |
DP_DEPL_SERVICES |
"servicesToDeploy" |
public static final String |
DP_DEPLOY_IN_TOMCAT |
"deployInTomcat" |
public static final String |
DP_DESCRIPTION |
"dashboard.description" |
public static final String |
DP_DESCRIPTION_FILE |
"dashboard.description.file" |
public static final String |
DP_DETACH_VIEW |
"detachViewers" |
public static final String |
DP_DOT_LOC |
"dotLocation" |
public static final String |
DP_ENDPOINT |
"serviceEndpoint" |
public static final String |
DP_FL_BIOCASE |
"biocase" |
public static final String |
DP_FL_HIBERNATE |
"hibernate" |
public static final String |
DP_FL_NONE |
"not-specified" |
public static final String |
DP_FL_SOAPLAB |
"soaplab" |
public static final String |
DP_HOSTNAME |
"tomcatHostname" |
public static final String |
DP_ICON |
"dashboard.icon" |
public static final String |
DP_IMPL_CLASS |
"serviceImplClass" |
public static final String |
DP_INP_ASBYTES |
"sendInputAsBytes" |
public static final String |
DP_INP_PING |
"sendEmptyInputAsPing" |
public static final String |
DP_INP_SHOW |
"showInput" |
public static final String |
DP_INP_SHOWXML |
"showInputAsXML" |
public static final String |
DP_LOCAL_DEPLOY |
"use-local-deploy" |
public static final String |
DP_MOSES_FLAVOUR |
"mosesFlavour" |
public static final String |
DP_OUT_FILE |
"outputToFile" |
public static final String |
DP_OUT_SHOW |
"showOutput" |
public static final String |
DP_OUT_SHOWXML |
"showOutputAsXML" |
public static final String |
DP_OUT_VIEWER |
"showInViewer" |
public static final String |
DP_P_DESCRIPTION |
"project.description" |
public static final String |
DP_P_DESCRIPTION_FILE |
"project.description.file" |
public static final String |
DP_PASSWORD_AUTHENTICATION |
"service-authentication-passwd" |
public static final String |
DP_PATTERN |
"classnamePattern" |
public static final String |
DP_PORT |
"tomcatPort" |
public static final String |
DP_REG_DT_AUTH |
"dp-reg-dt-auth" |
public static final String |
DP_REG_DT_DESC |
"dp-reg-dt-desc" |
public static final String |
DP_REG_DT_EMAIL |
"dp-reg-dt-email" |
public static final String |
DP_REG_DT_NAME |
"dp-reg-dt-name" |
public static final String |
DP_REG_DT_TREE |
"dp-reg-dt-tree" |
public static final String |
DP_REG_INFO |
"dp-reg-info" |
public static final String |
DP_REG_NS_AUTH |
"dp-reg-ns-auth" |
public static final String |
DP_REG_NS_DESC |
"dp-reg-ns-desc" |
public static final String |
DP_REG_NS_EMAIL |
"dp-reg-ns-email" |
public static final String |
DP_REG_NS_NAME |
"dp-reg-ns-name" |
public static final String |
DP_REG_S_AUTH |
"dp-reg-s-auth" |
public static final String |
DP_REG_S_CATEGORY |
"dp-reg-s-category" |
public static final String |
DP_REG_S_EMAIL |
"dp-reg-s-email" |
public static final String |
DP_REG_S_NAME |
"dp-reg-s-name" |
public static final String |
DP_REG_S_RDF_PATH |
"dp-reg-s-rdf-path" |
public static final String |
DP_REG_S_RDF_URL |
"dp-reg-s-rdf-url" |
public static final String |
DP_REG_S_TYPE |
"dp-reg-s-type" |
public static final String |
DP_REG_S_URL |
"dp-reg-s-url" |
public static final String |
DP_REG_S_XML_PATH |
"dp-reg-s-xml-path" |
public static final String |
DP_REG_ST_AUTH |
"dp-reg-st-auth" |
public static final String |
DP_REG_ST_DESC |
"dp-reg-st-desc" |
public static final String |
DP_REG_ST_EMAIL |
"dp-reg-st-email" |
public static final String |
DP_REG_ST_ISA |
"dp-reg-st-isa" |
public static final String |
DP_REG_ST_NAME |
"dp-reg-st-name" |
public static final String |
DP_REG_VERBOSE |
"dp-reg-verbose" |
public static final String |
DP_REGISTRY_CACHE_DIR |
"registry.cache.dir" |
public static final String |
DP_REGISTRY_ENDPOINT |
"dp-registry-endpoint" |
public static final String |
DP_REGISTRY_MODEL |
"dp-registry-model" |
public static final String |
DP_REGISTRY_NAMESPACE |
"dp-registry-namespace" |
public static final String |
DP_REGISTRY_SYNONYM |
"dp-registry-synonym" |
public static final String |
DP_RESULT_FILE |
"resultFile" |
public static final String |
DP_S_SELECTED |
"dp-s-selected" |
public static final String |
DP_SC_IN_FILE |
"sc-inputFromFile" |
public static final String |
DP_SC_INPUT_FILE |
"sc-inputFile" |
public static final String |
DP_SC_SERVICE |
"dp-sc-service" |
public static final String |
DP_SC_SERVICE_NAME |
"dp-sc-service-name" |
public static final String |
DP_SC_SERVICES |
"dp-sc-recent-services" |
public static final String |
DP_SEL_AUTHORITIES |
"selectedAuthorities" |
public static final String |
DP_SEL_SERVICES |
"selectedServices" |
public static final String |
DP_SERVICE_NAME |
"dp-service-name" |
public static final String |
DP_STATUS_MSG |
"status-msg" |
public static final String |
DP_TITLE |
"dashboard.title" |
public static final String |
DP_TITLE_ICON |
"dashboard.title.icon" |
public static final String |
DP_TOMCAT_HOME |
"tomcatHome" |
public static final String |
DP_USE_AUTHORITATIVE |
"dp-use-auth" |
public static final String |
DP_USE_CACHE |
"dp-use-cache" |
public static final String |
DP_USE_DOT |
"use-dot" |
public static final String |
DP_USE_DT_COMP |
"use-dt-comp" |
public static final String |
DP_USE_DT_DOC |
"use-dt-doc" |
public static final String |
DP_USE_DT_GEN |
"use-dt-gen" |
public static final String |
DP_USE_DT_JAR |
"use-dt-jar" |
public static final String |
DP_USE_S_COMP |
"use-s-comp" |
public static final String |
DP_USE_S_DOC |
"use-s-doc" |
public static final String |
DP_USE_S_GEN |
"use-s-gen" |
public static final String |
DP_USE_S_JAR |
"use-s-jar" |
public static final String |
DP_USE_SIGNATURE |
"dp-use-signature" |
public static final String |
DP_USE_SIMULATE |
"use-simulate" |
public static final String |
DP_USER_AUTHENTICATION |
"service-authentication-user" |
public static final String |
DP_USER_JARS |
"dirWithUserJars" |
public static final String |
DP_WANTED_REGISTRIES |
"dashboard.wanted.registries" |
public static final String |
DP_WSDD_TEMPL |
"wsddTemplate" |
| org.biomoby.service.dashboard.DeploymentTable | ||
|---|---|---|
public static final int |
COL_CLASSNAME |
2 |
public static final int |
COL_SERVICE |
1 |
| org.biomoby.service.dashboard.PrimaryDataTable | ||
|---|---|---|
public static final int |
COL_ARTICLE |
1 |
public static final int |
COL_DATATYPE |
2 |
public static final int |
COL_IN_SET |
3 |
public static final int |
COL_NAMESPACE |
4 |
| org.biomoby.service.dashboard.RegistryModel | ||
|---|---|---|
public static final int |
PART_DATA_TYPES |
2 |
public static final int |
PART_NAMESPACES |
8 |
public static final int |
PART_SERVICE_TYPES |
4 |
public static final int |
PART_SERVICES |
1 |
| org.biomoby.service.dashboard.SecondaryDataTable | ||
|---|---|---|
public static final int |
COL_ARTICLE |
1 |
public static final int |
COL_DATATYPE |
2 |
public static final int |
COL_DEFAULT |
3 |
public static final int |
COL_DESC |
7 |
public static final int |
COL_ENUM |
6 |
public static final int |
COL_MAX |
5 |
public static final int |
COL_MIN |
4 |
| org.biomoby.service.dashboard.TableSorter | ||
|---|---|---|
public static final int |
ASCENDING |
1 |
public static final int |
DESCENDING |
-1 |
public static final int |
NOT_SORTED |
0 |
| org.biomoby.service.dashboard.data.DataTypeModel | ||
|---|---|---|
public static final int |
COLUMN_ADD |
0 |
public static final int |
COLUMN_CDATA |
8 |
public static final int |
COLUMN_CLONE |
1 |
public static final int |
COLUMN_ID |
4 |
public static final int |
COLUMN_NS |
5 |
public static final int |
COLUMN_REMOVE |
2 |
public static final int |
COLUMN_TAREA |
7 |
public static final int |
COLUMN_TREE |
3 |
public static final int |
COLUMN_VALUE |
6 |
| org.biomoby.service.dashboard.renderers.Renderer | ||
|---|---|---|
public static final String |
CLASS |
"class" |
public static final String |
CLASS_NAME |
"class-name" |
public static final String |
DATA |
"data" |
public static final String |
DATA_CONTAINER |
"data-container" |
public static final String |
MIME_TYPE |
"mime-type" |
public static final String |
MOBY_TYPE |
"moby-type" |
| org.biomoby.service.dashboard.renderers.XMLTree | ||
|---|---|---|
public static final int |
MAX_TEXT_SIZE |
1000 |
| org.biomoby.service.generator.Generator | ||
|---|---|---|
public static final String |
GPROP_AUTH |
"auth" |
public static final String |
GPROP_DOTLOCATION |
"dot" |
public static final String |
GPROP_FILTER |
"filter" |
public static final String |
GPROP_NOGEN |
"nogen" |
public static final String |
GPROP_NOGRAPHS |
"nographs" |
public static final String |
GPROP_OUTDIR |
"outdir" |
public static final String |
GPROP_SERVICE |
"service" |
public static final String |
GPROP_VERBOSE |
"verbose" |
| org.biomoby.shared.Central | ||
|---|---|---|
public static final String |
DATA_TYPES_RESOURCE_NAME |
"Object" |
public static final String |
FULL_RESOURCE_NAME |
"Full" |
public static final String |
HAS |
"HAS" |
public static final String |
HASA |
"HASA" |
public static final int |
iHAS |
3 |
public static final int |
iHASA |
2 |
public static final int |
iISA |
1 |
public static final String |
ISA |
"ISA" |
public static final String |
NAMESPACES_RESOURCE_NAME |
"Namespace" |
public static final String |
SERVICE_INSTANCES_RESOURCE_NAME |
"ServiceInstance" |
public static final String |
SERVICE_TYPES_RESOURCE_NAME |
"Service" |
| org.biomoby.shared.CentralCached | ||
|---|---|---|
public static final String |
CACHE_PART_DATATYPES |
"c1" |
public static final String |
CACHE_PART_NAMESPACES |
"c4" |
public static final String |
CACHE_PART_SERVICES |
"c2" |
public static final String |
CACHE_PART_SERVICETYPES |
"c3" |
public static final String |
CACHE_PROP_COUNT |
"cache-count" |
public static final String |
CACHE_PROP_LOCATION |
"cache-loc" |
public static final String |
CACHE_PROP_NAME |
"cache-name" |
public static final String |
CACHE_PROP_OLDEST |
"cache-oldest" |
public static final String |
CACHE_PROP_REGISTRY_URL |
"cache-reg-url" |
public static final String |
CACHE_PROP_SIZE |
"cache-size" |
public static final String |
CACHE_PROP_YOUNGEST |
"cache-youngest" |
public static final String |
LIST_FILE |
"__L__I__S__T__" |
public static final String |
RDF_FILE |
"__R__D__F__" |
| org.biomoby.shared.LSIDResolver | ||
|---|---|---|
public static final String |
AUTHORITY_SERVICE_HTTP_BINDING |
"LSIDAuthorityHTTPBinding" |
public static final String |
AUTHORITY_SERVICE_SOAP_BINDING |
"LSIDAuthoritySOAPBinding" |
public static final String |
AUTHORITY_WSDL_LOCATION |
"/authority/" |
public static final String |
LSID_DATA_NAMESPACE |
"http://www.omg.org/LSID/2003/DataServiceSOAPBindings" |
public static final String |
LSID_HTTP_NAMESPACE |
"http://www.omg.org/LSID/2003/AuthorityServiceHTTPBindings" |
public static final String |
LSID_SOAP_NAMESPACE |
"http://www.omg.org/LSID/2003/AuthorityServiceSOAPBindings" |
public static final String |
LSID_WSDL_NAMESPACE |
"http://www.omg.org/LSID/2003/Standard/WSDL" |
public static final String |
SRV_PREFIX |
"_lsid._tcp." |
| org.biomoby.shared.MobyDataType | ||
|---|---|---|
public static final String |
DUMMY_NAME |
"_dummy_" |
| org.biomoby.shared.MobyPrefixResolver | ||
|---|---|---|
public static final String |
DUBLIN_CORE_NAMESPACE |
"http://purl.org/dc/elements/1.1/" |
public static final String |
DUBLIN_CORE_PREFIX |
"dc" |
public static final String |
HTTP_NAMESPACE |
"http://schemas.xmlsoap.org/wsdl/http/" |
public static final String |
HTTP_PREFIX |
"http" |
public static final String |
LSID_NAMESPACE |
"http://lsid.omg.org/predicates#" |
public static final String |
LSID_PREFIX |
"lsid" |
public static final String |
MOBY_TRANSPORT_NAMESPACE |
"http://biomoby.org/" |
public static final String |
MOBY_TRANSPORT_PREFIX |
"mobyt" |
public static final String |
MOBY_XML_NAMESPACE |
"http://www.biomoby.org/moby" |
public static final String |
MOBY_XML_NAMESPACE_INVALID |
"http://www.biomoby.org/moby-s" |
public static final String |
MOBY_XML_PREFIX |
"moby" |
public static final String |
SAWSDL_NAMESPACE |
"http://www.w3.org/ns/sawsdl" |
public static final String |
SAWSDL_PREFIX |
"sawsdl" |
public static final String |
SOAP_ENC_NAMESPACE |
"http://schemas.xmlsoap.org/soap/encoding/" |
public static final String |
SOAP_ENC_PREFIX |
"soap-enc" |
public static final String |
WS_ADDRESSING_NAMESPACE |
"http://schemas.xmlsoap.org/ws/2004/03/addressing" |
public static final String |
WS_ADDRESSING_PREFIX |
"wsa" |
public static final String |
WSDL_NAMESPACE |
"http://schemas.xmlsoap.org/wsdl/" |
public static final String |
WSDL_PREFIX |
"wsdl" |
public static final String |
WSDL20_NAMESPACE |
"http://www.w3.org/2006/01/wsdl" |
public static final String |
WSDL20_PREFIX |
"wsdl20" |
public static final String |
WSRP_NAMESPACE |
"http://docs.oasis-open.org/wsrf/rp-2" |
public static final String |
WSRP_PREFIX |
"wsrp" |
public static final String |
XHTML_NAMESPACE |
"http://www.w3.org/1999/xhtml" |
public static final String |
XHTML_PREFIX |
"xhtml" |
public static final String |
XLINK_NAMESPACE |
"http://www.w3.org/1999/xlink" |
public static final String |
XLINK_PREFIX |
"xlink" |
public static final String |
XSD_NAMESPACE |
"http://www.w3.org/2001/XMLSchema" |
public static final String |
XSD_PREFIX |
"xsd" |
public static final String |
XSI_NAMESPACE1999 |
"http://www.w3.org/1999/XMLSchema-instance" |
public static final String |
XSI_NAMESPACE2001 |
"http://www.w3.org/2001/XMLSchema-instance" |
public static final String |
XSI_PREFIX |
"xsi" |
public static final String |
XSI1999_PREFIX |
"xsi1999" |
public static final String |
XSI2001_PREFIX |
"xsi2001" |
| org.biomoby.shared.MobySecondaryData | ||
|---|---|---|
public static final String |
BOOLEAN_TYPE |
"Boolean" |
public static final String |
DATETIME_TYPE |
"DateTime" |
public static final String |
FLOAT_TYPE |
"Float" |
public static final String |
INTEGER_TYPE |
"Integer" |
public static final String |
STRING_TYPE |
"String" |
| org.biomoby.shared.MobyService | ||
|---|---|---|
public static final int |
ALIVE |
2 |
public static final String |
BIOMOBY_SERVICE_URI |
"http://biomoby.org/" |
public static final String |
CATEGORY_CGI |
"cgi" |
public static final String |
CATEGORY_CGI_ASYNC |
"cgi-async" |
public static final String |
CATEGORY_MOBY |
"moby" |
public static final String |
CATEGORY_MOBY_ASYNC |
"moby-async" |
public static final String |
CATEGORY_MOBY_DOCLIT |
"doc-literal" |
public static final String |
CATEGORY_MOBY_DOCLIT_ASYNC |
"doc-literal-async" |
public static final int |
DEAD |
1 |
public static final String |
DUMMY_NAME |
"_dummy_" |
public static final int |
PINGED |
4 |
public static final String |
SUBMIT_ACTION_SUFFIX |
"_submit" |
public static final int |
TESTED |
8 |
public static final int |
UNCHECKED |
0 |
| org.biomoby.shared.MobyServiceType | ||
|---|---|---|
public static final String |
UNCATEGORIZED_LABEL |
"Service" |
| org.biomoby.shared.data.MobyDataBytes | ||
|---|---|---|
public static final String |
BASE64_DATATYPE |
"text-base64" |
public static final int |
BYTE_READ_SIZE |
4096 |
public static final String |
ENCODED_MEMBER_NAME |
"content" |
| org.biomoby.shared.data.MobyDataInstance | ||
|---|---|---|
public static final int |
CENTRAL_XML_MODE |
124 |
public static final int |
SERVICE_XML_MODE |
891 |
| org.biomoby.shared.data.MobyDataSecondaryInstance | ||
|---|---|---|
public static final String |
ELEMENT_NAME |
"Parameter" |
public static final String |
VALUE_NAME |
"Value" |
| org.biomoby.shared.data.MobyDataXref | ||
|---|---|---|
public static final int |
CRIB_XML_MODE_OFF |
6767 |
public static final int |
CRIB_XML_MODE_ON |
6766 |
public static final String |
IC |
"Inferred by Curator" |
public static final String |
IDA |
"Inferred from Direct Assay" |
public static final String |
IEA |
"Inferred from Electronic Annotation" |
public static final String |
IEP |
"Inferred from Expression Pattern" |
public static final String |
IGI |
"Inferred from Genetic Interaction" |
public static final String |
IMP |
"Inferred from Mutant Phenotype" |
public static final String |
IPI |
"Inferred from Physical Interaction" |
public static final String |
ISS |
"Inferred from Sequence or Structral similarity" |
public static final String |
NAS |
"Non-traceable Author Statement" |
public static final String |
ND |
"No biological Data available" |
public static final String |
NR |
"Not Recorded" |
public static final String |
RCA |
"inferred from Reviewed Computational Analysis" |
public static final String |
TAS |
"Traceable Author Statement" |
| org.biomoby.shared.data.MobyServiceException | ||
|---|---|---|
public static final int |
ERROR_CODE_UNKNOWN |
-35353 |
public static final String |
SEVERITY_ERROR_STR |
"error" |
public static final String |
SEVERITY_INFO_STR |
"info" |
public static final int |
SEVERITY_UNKNOWN |
235823 |
public static final String |
SEVERITY_WARNING_STR |
"warning" |
| org.biomoby.shared.datatypes.MobyDateTime | ||
|---|---|---|
public static final String |
FULL_FORMAT |
"yyyy-MM-dd\'T\'HH:mm:ssZ" |
| org.biomoby.shared.event.Notifier | ||
|---|---|---|
public static final int |
AUTHORITIES_CANCELLED |
27 |
public static final int |
AUTHORITIES_COUNT |
16 |
public static final int |
AUTHORITIES_END |
19 |
public static final int |
AUTHORITIES_RESET |
23 |
public static final int |
AUTHORITIES_START |
15 |
public static final int |
AUTHORITIES_UPDATED |
31 |
public static final int |
AUTHORITY_LOADED |
18 |
public static final int |
AUTHORITY_LOADING |
17 |
public static final int |
DATA_TYPE_LOADED |
3 |
public static final int |
DATA_TYPE_LOADING |
2 |
public static final int |
DATA_TYPES_CANCELLED |
24 |
public static final int |
DATA_TYPES_COUNT |
1 |
public static final int |
DATA_TYPES_END |
4 |
public static final int |
DATA_TYPES_RESET |
20 |
public static final int |
DATA_TYPES_START |
0 |
public static final int |
DATA_TYPES_UPDATED |
28 |
public static final int |
NAMESPACE_LOADED |
13 |
public static final int |
NAMESPACE_LOADING |
12 |
public static final int |
NAMESPACES_CANCELLED |
26 |
public static final int |
NAMESPACES_COUNT |
11 |
public static final int |
NAMESPACES_END |
14 |
public static final int |
NAMESPACES_RESET |
22 |
public static final int |
NAMESPACES_START |
10 |
public static final int |
NAMESPACES_UPDATED |
30 |
public static final int |
SERVICE_TYPE_LOADED |
8 |
public static final int |
SERVICE_TYPE_LOADING |
7 |
public static final int |
SERVICE_TYPES_CANCELLED |
25 |
public static final int |
SERVICE_TYPES_COUNT |
6 |
public static final int |
SERVICE_TYPES_END |
9 |
public static final int |
SERVICE_TYPES_RESET |
21 |
public static final int |
SERVICE_TYPES_START |
5 |
public static final int |
SERVICE_TYPES_UPDATED |
29 |
public static final int |
SIGNAL_CANCEL_DATA_TYPES |
1 |
public static final int |
SIGNAL_CANCEL_NAMESPACES |
4 |
public static final int |
SIGNAL_CANCEL_SERVICE_TYPES |
2 |
public static final int |
SIGNAL_CANCEL_SERVICES |
3 |
| org.biomoby.shared.parser.MobyTags | ||
|---|---|---|
public static final String |
ARTICLENAME |
"articleName" |
public static final String |
AUTHORITY |
"authority" |
public static final String |
AUTHURI |
"authURI" |
public static final String |
COLLECTION |
"Collection" |
public static final String |
COMMENT |
"comment" |
public static final String |
CROSSREFERENCE |
"CrossReference" |
public static final String |
DATABASECOMMENT |
"database_comment" |
public static final String |
DATABASENAME |
"database_name" |
public static final String |
DATABASEVERSION |
"database_version" |
public static final String |
EVIDENCECODE |
"evidenceCode" |
public static final String |
EXCEPTIONCODE |
"exceptionCode" |
public static final String |
EXCEPTIONMESSAGE |
"exceptionMessage" |
public static final String |
MOBY |
"MOBY" |
public static final String |
MOBY_XML_NS |
"http://www.biomoby.org/moby" |
public static final String |
MOBY_XML_NS_PREFIX |
"moby" |
public static final String |
MOBYBOOLEAN |
"Boolean" |
public static final String |
MOBYCONTENT |
"mobyContent" |
public static final String |
MOBYDATA |
"mobyData" |
public static final String |
MOBYDATETIME |
"DateTime" |
public static final String |
MOBYEXCEPTION |
"mobyException" |
public static final String |
MOBYFLOAT |
"Float" |
public static final String |
MOBYINTEGER |
"Integer" |
public static final String |
MOBYOBJECT |
"Object" |
public static final String |
MOBYSTRING |
"String" |
public static final String |
NOTES |
"Notes" |
public static final String |
OBJ_ID |
"id" |
public static final String |
OBJ_NAMESPACE |
"namespace" |
public static final String |
PARAMETER |
"Parameter" |
public static final String |
PLAINVERSION |
"version" |
public static final String |
PROVISIONINFORMATION |
"ProvisionInformation" |
public static final String |
QUERYID |
"queryID" |
public static final String |
REFELEMENT |
"refElement" |
public static final String |
REFQUERYID |
"refQueryID" |
public static final String |
SERVICECOMMENT |
"serviceComment" |
public static final String |
SERVICEDATABASE |
"serviceDatabase" |
public static final String |
SERVICENAME |
"serviceName" |
public static final String |
SERVICENOTES |
"serviceNotes" |
public static final String |
SERVICESOFTWARE |
"serviceSoftware" |
public static final String |
SEVERITY |
"severity" |
public static final String |
SIMPLE |
"Simple" |
public static final String |
SOFTWARECOMMENT |
"software_comment" |
public static final String |
SOFTWARENAME |
"software_name" |
public static final String |
SOFTWAREVERSION |
"software_version" |
public static final String |
VALUE |
"Value" |
public static final String |
XREF |
"Xref" |
public static final String |
XREFTYPE |
"xrefType" |
| org.biomoby.shared.parser.ServiceException | ||
|---|---|---|
public static final int |
COMMUNICATION_FAILURE |
601 |
public static final int |
ERROR |
1 |
public static final int |
INFO |
3 |
public static final int |
INPUT_EMPTY_OBJECT |
226 |
public static final int |
INPUT_INCORRECT_COLLECTION |
225 |
public static final int |
INPUT_INCORRECT_NAMESPACE |
227 |
public static final int |
INPUT_INCORRECT_PARAMETER |
222 |
public static final int |
INPUT_INCORRECT_SIMPLE |
223 |
public static final int |
INPUT_NOT_ACCEPTED |
202 |
public static final int |
INPUT_REQUIRED_PARAMETER |
221 |
public static final int |
INPUT_REQUIRED_PARAMETERS |
224 |
public static final int |
INPUTS_INVALID |
201 |
public static final int |
INTERNAL_PROCESSING_ERROR |
600 |
public static final int |
NO_METADATA_AVAILABLE |
400 |
public static final int |
NOT_IMPLEMENTED |
603 |
public static final int |
NOT_RUNNABLE |
300 |
public static final int |
NOT_RUNNING |
301 |
public static final int |
NOT_TERMINATED |
302 |
public static final int |
OK |
700 |
public static final int |
PROTOCOLS_UNACCEPTED |
500 |
public static final int |
UNKNOWN_NAME |
200 |
public static final int |
UNKNOWN_STATE |
602 |
public static final int |
WARNING |
2 |
| org.inb.* |
|---|
| org.inb.biomoby.central.gui.renderer.CardinalityTableCellEditor.CardinalityComponent | ||
|---|---|---|
public static final String |
HAS_LABEL |
"0..N" |
public static final String |
HASA_LABEL |
"0..1" |
| org.inb.biomoby.client.MobyDispatch | ||
|---|---|---|
public static final String |
NAMESPACE |
"http://biomoby.org/" |
| org.inb.biomoby.client.gui.ontology.PatternComponent | ||
|---|---|---|
public static final int |
ROWS |
8 |
| org.inb.biomoby.client.gui.ontology.Text__plainComponent<T extends Text__plain> | ||
|---|---|---|
public static final int |
ROWS |
8 |
| org.inb.biomoby.service.IAsyncMobyService | ||
|---|---|---|
public static final String |
MOBY_NAMESPACE |
"http://biomoby.org/" |
| org.inb.biomoby.service.resolver.MobyWSRFScopeFeature | ||
|---|---|---|
public static final String |
ID |
"http://biomoby.org/" |
| org.inb.biomoby.shared.wsrf.MobyEndpointReference | ||
|---|---|---|
public static final String |
REF_PARAM_NAME |
"ServiceInvocationId" |
public static final String |
XPATH_PARAM_NAME |
"Expression" |
| org.omg.* |
|---|
| org.omg.lsae.notifications.StateEvent | ||
|---|---|---|
public static final int |
COMPLETED |
102 |
public static final int |
CREATED |
100 |
public static final int |
RUNNING |
101 |
public static final int |
TERMINATED_BY_ERROR |
104 |
public static final int |
TERMINATED_BY_REQUEST |
103 |
| org.omg.lsae.sax.LsaeTags | ||
|---|---|---|
public static final String |
aCOMPLETED_STEPS |
"steps_completed" |
public static final String |
aNEW_STATE |
"new_state" |
public static final String |
aPERCENTAGE |
"percentage" |
public static final String |
aPREV_STATE |
"previous_state" |
public static final String |
aREMAINING |
"remaining" |
public static final String |
aTOTAL_STEPS |
"total_steps" |
public static final String |
HEARTBEAT |
"heartbeat_progress" |
public static final String |
MSG |
"message" |
public static final String |
PERCENT |
"percent_progress" |
public static final String |
STATE |
"state_changed" |
public static final String |
STEP |
"step_progress" |
public static final String |
TIME |
"time_progress" |
| org.soap.* |
|---|
| org.soap.sax.FaultTags | ||
|---|---|---|
public static final String |
DESCRIPTION |
"Description" |
public static final String |
FAULT |
"Fault" |
public static final String |
FAULT_CODE |
"faultcode" |
public static final String |
FAULT_DETAIL |
"detail" |
public static final String |
FAULT_STRING |
"faultstring" |
public static final String |
INVALID_PROP_QNAME |
"InvalidResourcePropertyQNameFault" |
public static final String |
RESOURCE_UNAVAIL |
"ResourceUnavailableFault" |
public static final String |
RESOURCE_UNKNOWN |
"ResourceUnknownFault" |
public static final String |
TIMESTAMP |
"Timestamp" |
| org.w3c.* |
|---|
| org.w3c.addressing.sax.EprTags | ||
|---|---|---|
public static final String |
ADDR |
"Address" |
public static final String |
EPR |
"EndpointReference" |
public static final String |
REF_PARAMETERS |
"ReferenceParameters" |
public static final String |
SVC_ID |
"ServiceInvocationId" |
|
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