Biomoby in Java 'Biomoby in Java' is a Java flavour of http://biomoby.org project. The curator is Martin Senger who welcomes your suggestions and comments at senger@ebi.ac.uk. provider_name @PROVIDER_NAME@ The full name of the administrator to whom questions and comments about this installation should be addressed. It appears in the generated HTML pages. provider_email @PROVIDER_EMAIL@ The EMAIL address of the administrator to whom questions and comments about this installation should be addressed. It appears in the generated HTML pages. @SERVLET_NAME_GRAPHS@ It produces graphs of data and service types and service instances registered by any Biomoby registry. The users can customize both the appeareance and the contents of these graphs. org.biomoby.client.GraphsServlet refresh_interval @REFRESH_INTERVAL@ How often should be refreshed the cache containing data from the BioMoby registry - in minutes. An integer. cache_dir @CACHE_DIR@ An absolute path to a directory where the cached graphs will be created. By default (when this is empty) the files with graphs will be created inside the servlet context (in 'webapps/jmoby/cache/'). Related also to 'cache_url' parameter. cache_url @CACHE_URL@ The first part of a URL pointing to the cached objects. The servlet adds to this a directory subtree starting where 'cache_dir' (yet another parameter) ends. default_endpoint @DEFAULT_ENDPOINT@ A URL of a BioMoby registry that is displayed by default. Leaving this parameter empty will bring here as a default an official BioMoby site in Canada. default_namespace @DEFAULT_NAMESPACE@ A namespace of a BioMoby registry that is displayed by default. Leaving this parameter empty will bring here as a default an official BioMoby namespace (as used by the registry in Canada). dot_path @DOT_PATH@ A full path to the 'dot' program (excluding the 'dot' itself and the ending slash). Use this only if the 'dot' program is not on the PATH used by Tomcat. proxySet @PROXY_SET@ Set to 'true' if your Tomcat needs to find an HTTP proxy server, and if it does not have it set in its own configuration. http.proxyHost @PROXY_HOST@ The HTTP proxy hostname. http.proxyPort @PROXY_PORT@ The HTTP proxy port number. registry_cache_dir @REGISTRY_CACHE_DIR@ An absolute path to a directory where the Moby registry cached objects will be created. By default (when this is empty) the cache will be created inside the servlet context (in 'webapps/jmoby/cache/'). Note that this is a different cache than the one defined by 'cache_dir' (that one caches resulting images/graphs). @SERVLET_NAME_GRAPHS@ @SERVLET_URL_GRAPHS@