This ontology node encompasses those services that render data (i.e. produce an image, etc).
a base Service class, never instantiated
services that provide the conversion of text into xml to yield data that is more meaningful
Operations describing a conversion of type
As per the myGrid definition of Shim services, these services execute data-type transformations only; no semantic transformation nor any analysis. Simply conversion of one data format to another for the same data.
services that take overlapping, nearly identical sequences and report the differences between them.
Executes a union on incoming collections of objects
Various types of operationons on sets of objects (union, intersection, etc.)
RNA_Studio, a serials of tools about structures of RNA, RNA motif and so on
services that perform a global alignment, an alignment in which all the characters in both sequences participate in the alignment. Global alignments are useful mostly for finding closely-related sequences.
Pairwise sequence comparison alignment methods.
Tools related to protein structure modeling
services related to the pairwise sequence comparison.
Services that change MOBY Data Objects from one type to another without changes to the biological meaning of the information, primarily for service I/O compatibility (a.k.a. "shims")
services that merge two or more objects into one object
A container for service types that do not have any scientific meaning.
services related to the retrieval of nucleotide sequences.
services that mask nucleotide sequence repeats.
services that retrieve alignments among sequences
services related to the study of evolutionary relatedness among various groups of organisms.
services related to the computation of phylogenetic distances
services that seek to predict the native conformation of a protein from the amino acid sequence alone
These services about protein structural studies
services related to finding repetitions in sequences.
services that study the rates of chemical reactions that are catalysed by enzymes
Determines statistical measures of the given input data
Operation that removes parts of the sequence based on some user-defined characteristics
Predict the conformation of all or part of the structure associated with a given sequence
services that masks low-complexity DNA regions.
services that mask low-complexity regions.
services that convert datatypes into some other datatypes.
services related to distance matrix methods, which transform character data into a matrix of pairwise distances, one distance for each possible pairing of the taxa under study.
services that study the interactions among macromolecules
services that filter input sequences according to some criteria.
services that calculate a dot plot between two sequences. A dot plot is a graphical method that allows the comparison of two biological sequences and identifies regions of close similarity between them.
services derived from DNA microarray techniques.
services related to the detection of nucleotidic motifs.
Aminoacids sequences retrieving services
services that allow as an entry, a sequence data from a sequencing project and assemble these data into a contiguous sequence.
Services about physico chemical properties
Executes an intersection of two incoming collections of objects
services related to the identification of areas in the macromolecule sequence or structure
services related to the study of nucleotidic 2D structure.
services related to the creation of an object
services that split an object into two or more objects
services for constructing an atomic-resolution model of a protein from its amino acid sequence
Blast sequences using NCBI Blast program
services that compute the evolutionary interrelationships among various species or other entities that are believed to have a common ancestor
services related to the local pairwise sequence comparison.
services that perform structural alignments, which is a form of sequence alignment based on comparison of shape. These alignments attempt to establish equivalences between two or more polymer structures based on their shape and three-dimensional conformation.
services devoted to the data analysis by partitioning a data set into subsets based on a distance metric among elements
TAPIR providers are normally biological collection databases. The most common operation is to retrieve data from them to be used in analysis. They always implement two secondary inputs, a start and next parameter to do paging. Please read http://trac.pywrapper.org/pywrapper/wiki/BioMOBYSupport
a human-readable description of the service
services related to the large-scale study of protein, particularly their structures and functions.
services related to the retrieval of database entries.
Multiple sequence comparison alignment methods.
Retrieve SNP in genes of Arabidopsis th. strains
services that annotate input sequences with information relating position to intron-exon-boundaries, regulatory sequences, repeats, gene names and protein products and many other features.
These services return objects which can be used as input for displaying tools (graphics, 3D structures, etc)
services that study the process in which a gene's DNA sequence is converted into the structures and functions of a cell
services that perform threading methods, which are methods for the computational prediction of protein structure from protein sequence.
services that edit a datatype via a bioinformatics application.
services that translate nucleotide sequences into peptide sequences or vice versa.
services related to the global pairwise sequence comparison.
services that analyse sequence composition.
services that study the process by means an enzyme cuts double-stranded DNA
Services about protein secondary structure analysis