mmb.pcb.ub.es,showFSOLVonStructure
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,showFSOLVonStructure:2006-10-04T14-57-46Z
location URI: http://mmb2.pcb.ub.es:8080/FSolv/showFSOLVonStructure
has service description text: FSolv report 3D representation
has service description location: http://mmb2.pcb.ub.es:8080/FSolv/rdf/showFSOLVonStructure.rdf
has service name text: showFSOLVonStructure
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: showFSOLVonStructure
  performs task: operationTask
    type: Displaying
  input parameter: parameter
    has parameter name text: structure
    object type: PDB-Text
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter name text: solvation
    object type: FSOLV Text
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: structure
    object type: PDB Enriched
    has parameter type: simpleParameter

mmb.pcb.ub.es,parseAminoAcidSequenceFromPDBText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parseAminoAcidSequenceFromPDBText:2006-10-05T10-37-14Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Extracts amino acid sequence that corresponds to structure in PDB
has service description location: http://mmb2.pcb.ub.es/moby/rdf/parseAminoAcidSequenceFromPDBText.rdf
has service name text: parseAminoAcidSequenceFromPDBText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parseAminoAcidSequenceFromPDBText
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: inputPDB
    object type: PDB-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: sequence
    object type: AminoAcidSequence
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,parseFeatureAASequenceFromFSOLVText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parseFeatureAASequenceFromFSOLVText:2006-10-05T15-13-18Z
location URI: http://mmb2.pcb.ub.es:8080/FSolv/parseFeatureAASequenceFromFSOLVText
has service description text: Parses a FSOLVText report into a FeatureAASequence (the feature is DPS DG)
has service description location: http://mmb2.pcb.ub.es:8080/FSolv/rdf/parseFeatureAASequenceFromFSOLVText.rdf
has service name text: parseFeatureAASequenceFromFSOLVText
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parseFeatureAASequenceFromFSOLVText
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: solvation
    object type: FSOLV Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: sequence
    object type: FeatureAASequence
    has parameter type: simpleParameter

mmb.pcb.ub.es,getProtProtInterfaceFromPDBId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getProtProtInterfaceFromPDBId:2006-10-05T10-27-59Z
location URI: http://mmb2.pcb.ub.es:8080/PDBServices/getProtProtInterfaceFromPDBId
has service description text: Given a pdbCode returns a prot-prot interface
has service description location: http://mmb2.pcb.ub.es:8080/PDBServices/rdf/getProtProtInterfaceFromPDBId.rdf
has service name text: getProtProtInterfaceFromPDBId
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getProtProtInterfaceFromPDBId
  performs task: operationTask
    type: Interactions
  input parameter: parameter
    has parameter name text: pdbCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: structure
    object type: AnnotatedStructure
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,parseFeatureAASequenceFromPMUTText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parseFeatureAASequenceFromPMUTText:2006-10-05T15-16-12Z
location URI: http://mmb2.pcb.ub.es:8080/MiscServices/parseFeatureAASequenceFromPMUTText
has service description text: Parses a PMUTText report into a FeatureAASequence. Value is patogenicity prediction
has service description location: http://mmb2.pcb.ub.es:8080/MiscServices/rdf/parseFeatureAASequenceFromFSOLVText.rdf
has service name text: parseFeatureAASequenceFromPMUTText
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parseFeatureAASequenceFromPMUTText
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: HSReport
    object type: PMUT Text
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: sequence
    object type: FeatureAASequence
    has parameter type: simpleParameter

mmb.pcb.ub.es,getAminoAcidSequenceFromPDB
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getAminoAcidSequenceFromPDB:2006-10-05T10-49-17Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Produces full amino acid sequence that corresponds to a PDB entry
has service description location: http://mmb2.pcb.ub.es/moby/rdf/getAminoAcidSequenceFromPDB.rdf
has service name text: getAminoAcidSequenceFromPDB
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getAminoAcidSequenceFromPDB
  performs task: operationTask
    type: GettingAminoacids
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: sequence
    object type: AminoAcidSequence
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,getStructureFromPDB
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getStructureFromPDB:2006-10-05T10-55-24Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Retrieves structure from PDB (PDB format) from a PDB Id Allows to specify a single chain using the format XXXX_X.
has service description location: http://mmb2.pcb.ub.es/moby/rdf/getStructureFromPDB.rdf
has service name text: getStructureFromPDB
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getStructureFromPDB
  performs task: operationTask
    type: GettingStructures
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: structure
    object type: PDB-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,parseSecondaryStructureFromPHDText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parseSecondaryStructureFromPHDText:2006-10-04T15-28-46Z
location URI: http://mmb2.pcb.ub.es:8080/MiscServices/parseSecondaryStructureFromPHDText
has service description text: Parses secondary structure from a PHD report following the Profile network prediction HeiDelberg
has service name text: parseSecondaryStructureFromPHDText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parseSecondaryStructureFromPHDText
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: PHDReport
    object type: PHD Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: UniProt
  output parameter: parameter
    has parameter name text: sequence
    object type: PropertySequence
    has parameter type: simpleParameter

mmb.pcb.ub.es,runPSIBlastpFromFASTA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runPSIBlastpFromFASTA:2006-10-04T16-10-14Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Perform 2 iterations of protein PSI Blast against non-redundant database with standard settings
has service description location: http://mmb2.pcb.ub.es/moby/rdf/runPSIBlastpFromFASTA.rdf
has service name text: runPSIBlastpFromFASTA
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runPSIBlastpFromFASTA
  performs task: operationTask
    type: Pairwise Local Aligning
  input parameter: parameter
    has parameter name text: sequence
    object type: FASTA AA
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: TrEMBL
  output parameter: parameter
    has parameter name text: BlastReport
    object type: BLAST-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt

mmb.pcb.ub.es,getHeaderFromPDB
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getHeaderFromPDB:2006-10-05T10-53-30Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Retrieves headers from a PDB entry in PDB format
has service description location: http://mmb2.pcb.ub.es/moby/rdf/getHeaderFromPDB.rdf
has service name text: getHeaderFromPDB
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getHeaderFromPDB
  performs task: operationTask
    type: GettingStructures
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: structure
    object type: PDB-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,runPHDFromAminoAcidSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runPHDFromAminoAcidSequence:2006-10-04T15-34-34Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Performs secondary structure and accessibility predictions using PHD
has service name text: runPHDFromAminoAcidSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runPHDFromAminoAcidSequence
  performs task: operationTask
    type: PhysicoChemical Properties
  input parameter: parameter
    has parameter name text: sequence
    object type: AminoAcidSequence
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
  output parameter: parameter
    has parameter name text: PHDReport
    object type: PHD Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: UniProt

mmb.pcb.ub.es,getPDBLigand
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getPDBLigand:2006-10-05T10-22-33Z
location URI: http://mmb2.pcb.ub.es:8080/PDBServices/getPDBLigand
has service description text: Given a PDB Ligand code, returns information about the ligand
has service description location: http://mmb2.pcb.ub.es:8080/PDBServices/rdf/getPDBLigand.rdf
has service name text: getPDBLigand
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getPDBLigand
  performs task: operationTask
    type: Retrieving
  input parameter: parameter
    has parameter name text: pdbLigandCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: output
    object type: PDBLigand
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,showPMUTonStructure
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,showPMUTonStructure:2006-10-04T16-13-59Z
location URI: http://mmb2.pcb.ub.es:8080/MiscServices/showPMUTonStructure
has service description text: PMUT report 3D representation
has service description location: http://mmb2.pcb.ub.es:8080/MiscServices/rdf/showPMUTonStructure.rdf
has service name text: showPMUTonStructure
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: showPMUTonStructure
  performs task: operationTask
    type: Displaying
  input parameter: parameter
    has parameter name text: HSReport
    object type: PMUT Text
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter name text: structure
    object type: PDB-Text
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: structure
    object type: PDB Enriched
    has parameter type: simpleParameter

mmb.pcb.ub.es,runFSOLVFromPDBText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runFSOLVFromPDBText:2006-10-04T14-20-41Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Evaluates fractional solvation based on LRT method
has service description location: http://mmb2.pcb.ub.es/moby/rdf/runFSOLVFromPDBText.rdf
has service name text: runFSOLVFromPDBText
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runFSOLVFromPDBText
  performs task: operationTask
    type: PhysicoChemical Properties
  input parameter: parameter
    has parameter name text: structure
    object type: PDB-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: solvation
    object type: FSOLV Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,plotFeatureAASequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,plotFeatureAASequence:2006-10-05T15-09-48Z
location URI: http://mmb2.pcb.ub.es:8080/MiscServices/plotFeatureAASequence
has service description text: Returns a 2D graphic from a FeatureAASequence (png image)
has service description location: http://mmb2.pcb.ub.es:8080/MiscServices/rdf/plotFeatureAASequence.rdf
has service name text: plotFeatureAASequence
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: plotFeatureAASequence
  performs task: operationTask
    type: Displaying
  input parameter: parameter
    has parameter name text: sequence
    object type: FeatureAASequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: image
    object type: Typed Image
    has parameter type: simpleParameter

mmb.pcb.ub.es,parseAccessibilityFromPHDText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parseAccessibilityFromPHDText:2006-10-04T15-19-06Z
location URI: http://mmb2.pcb.ub.es:8080/MiscServices/parseAccessibilityFromPHDText
has service description text: Parses accessibility from a PHD report, where: b = 0-9%, i = 9-36%, e = 36-100%
has service name text: parseAccessibilityFromPHDText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parseAccessibilityFromPHDText
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: PHDReport
    object type: PHD Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: UniProt
  output parameter: parameter
    has parameter name text: sequence
    object type: PropertySequence
    has parameter type: simpleParameter

mmb.pcb.ub.es,getPDBLigandStructure
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getPDBLigandStructure:2006-10-05T10-26-12Z
location URI: http://mmb2.pcb.ub.es:8080/PDBServices/getPDBLigandStructure
has service description text: Given a PDB code and a PDB Ligand code, returns the PDB-text of the ligand into this PDB structure
has service description location: http://mmb2.pcb.ub.es:8080/PDBServices/rdf/getPDBLigandStructure.rdf
has service name text: getPDBLigandStructure
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getPDBLigandStructure
  performs task: operationTask
    type: Protein 3D Structures
  input parameter: parameter
    has parameter name text: PDBCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  input parameter: parameter
    has parameter name text: PDBLigandCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: structure
    object type: PDB-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,runPMUTHotSpotFromFASTA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runPMUTHotSpotFromFASTA:2006-10-04T16-05-19Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Predicts sequence positions (Hot Spots) that would produce pathological behaviour when mutated. Trained with human pathological mutations
has service name text: runPMUTHotSpotFromFASTA
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runPMUTHotSpotFromFASTA
  performs task: operationTask
    type: Mutation
  input parameter: parameter
    has parameter name text: sequence
    object type: FASTA AA
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: HSReport
    object type: PMUT Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot

mmb.pcb.ub.es,runPHDFromFASTA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runPHDFromFASTA:2006-10-04T15-51-33Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Performs secondary structure and accessibility predictions using PHD
has service name text: runPHDFromFASTA
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runPHDFromFASTA
  performs task: operationTask
    type: PhysicoChemical Properties
  input parameter: parameter
    has parameter name text: sequence
    object type: FASTA AA
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
  output parameter: parameter
    has parameter name text: PHDReport
    object type: PHD Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: UniProt

mmb.pcb.ub.es,runPSIBlastpFromAminoAcidSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runPSIBlastpFromAminoAcidSequence:2006-10-04T16-07-27Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Perform 2 iterations of protein PSI Blast against non-redundant database with standard settings
has service name text: runPSIBlastpFromAminoAcidSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runPSIBlastpFromAminoAcidSequence
  performs task: operationTask
    type: Pairwise Local Aligning
  input parameter: parameter
    has parameter name text: sequence
    object type: AminoAcidSequence
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: TrEMBL
  output parameter: parameter
    has parameter name text: BlastReport
    object type: BLAST-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt

mmb.pcb.ub.es,runPMUTHotSpotFromAminoAcidSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runPMUTHotSpotFromAminoAcidSequence:2006-10-04T16-00-17Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Predicts sequence positions (Hot Spots) that would produce pathological behaviour when mutated. Trained with human pathological mutations
has service name text: runPMUTHotSpotFromAminoAcidSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runPMUTHotSpotFromAminoAcidSequence
  performs task: operationTask
    type: Mutation
  input parameter: parameter
    has parameter name text: sequence
    object type: AminoAcidSequence
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: HSReport
    object type: PMUT Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot

mmb.pcb.ub.es,getComponentsFromPDBId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getComponentsFromPDBId:2006-10-05T10-10-57Z
location URI: http://mmb2.pcb.ub.es:8080/PDBServices/getComponentsFromPDBId
has service description text: Given a PDB code, returns all the components of the protein
has service description location: http://mmb2.pcb.ub.es:8080/PDBServices/rdf/getComponentsFromPDBId.rdf
has service name text: getComponentsFromPDBId
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getComponentsFromPDBId
  performs task: operationTask
    type: Interactions
  input parameter: parameter
    has parameter name text: pdbCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: justComplexes
    min: 0
    max: 1
    has default value: 0
    datatype: Integer
  output parameter: parameter
    has parameter name text: structure
    object type: AnnotatedStructure
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,runPHDFromBLASTText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runPHDFromBLASTText:2006-10-04T15-41-05Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Predicts secondary structure and accessibility using PHD program
has service name text: runPHDFromBLASTText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runPHDFromBLASTText
  performs task: operationTask
    type: Protein Secondary Structures
  input parameter: parameter
    has parameter name text: BlastReport
    object type: BLAST-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: PHDReport
    object type: PHD Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot

mmb.pcb.ub.es,getActiveSiteInterfaceFromPDBId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getActiveSiteInterfaceFromPDBId:2006-10-05T10-08-05Z
location URI: http://mmb2.pcb.ub.es:8080/PDBServices/getActiveSiteInterfaceFromPDBId
has service description text: Given a PDB code, returns all the protein fragments that interact with a ligand
has service description location: http://mmb2.pcb.ub.es:8080/PDBServices/rdf/getActiveSiteInterfaceFromPDBId.rdf
has service name text: getActiveSiteInterfaceFromPDBId
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getActiveSiteInterfaceFromPDBId
  performs task: operationTask
    type: Interactions
  input parameter: parameter
    has parameter name text: pdbCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: structure
    object type: AnnotatedStructure
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,parsePropertySequenceFromPMUTText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parsePropertySequenceFromPMUTText:2006-10-04T15-04-19Z
location URI: http://mmb2.pcb.ub.es:8080/MiscServices/parsePropertySequenceFromPMUTText
has service description text: Parses a PMUTText report into a PropertySequence (where N means NEUTRAL and H means HOT-SPOT)
has service description location: http://mmb2.pcb.ub.es:8080/MiscServices/rdf/parsePropertySequenceFromPMUTText.rdf
has service name text: parsePropertySequenceFromPMUTText
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parsePropertySequenceFromPMUTText
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: HSReport
    object type: PMUT Text
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: sequence
    object type: PropertySequence
    has parameter type: simpleParameter

mmb.pcb.ub.es,runPMUTHotSpotFromBLASTText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,runPMUTHotSpotFromBLASTText:2006-10-04T16-03-23Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Predicts sequence positions (Hot Spots) that would produce pathological behaviour when mutated. Trained with human pathological mutations
has service name text: runPMUTHotSpotFromBLASTText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: runPMUTHotSpotFromBLASTText
  performs task: operationTask
    type: Protein Secondary Structures
  input parameter: parameter
    has parameter name text: BlastReport
    object type: BLAST-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: HSReport
    object type: PMUT Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot

mmb.pcb.ub.es,parseMultipleAlignFromBLASTText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parseMultipleAlignFromBLASTText:2006-10-05T10-42-34Z
location URI: http://mmb2.pcb.ub.es/moby/moby.cgi
has service description text: Produces a multiple alignment in FASTA format from Blast Hits.
has service description location: http://mmb2.pcb.ub.es/moby/rdf/parseMultipleAlignFromBLASTText.rdf
has service name text: parseMultipleAlignFromBLASTText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parseMultipleAlignFromBLASTText
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: BlastReport
    object type: BLAST-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: UniProt
  output parameter: parameter
    has parameter name text: sequence
    object type: FASTA AA multi
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: UniProt

mmb.pcb.ub.es,parseGFFFromFeatureAASequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parseGFFFromFeatureAASequence:2006-10-05T15-10-13Z
location URI: http://mmb2.pcb.ub.es:8080/MiscServices/parseGFFFromFeatureAASequence
has service description text: Converts a feature AA sequence into GFF
has service description location: http://mmb2.pcb.ub.es:8080/MiscServices/rdf/parseGFFFromFeatureAASequence.rdf
has service name text: parseGFFFromFeatureAASequence
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parseGFFFromFeatureAASequence
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: sequence
    object type: FeatureAASequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: sequence
    object type: GFF
    has parameter type: simpleParameter

mmb.pcb.ub.es,parsePropertySequenceFromFSOLVText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,parsePropertySequenceFromFSOLVText:2006-10-04T14-11-52Z
location URI: http://mmb2.pcb.ub.es:8080/FSolv/parsePropertySequenceFromFSOLVText
has service description text: Parses a FSOLVText report into a PropertySequence (where N means NORMAL and O means OUTSIDE)
has service description location: http://mmb2.pcb.ub.es:8080/FSolv/rdf/parsePropertySequenceFromFSOLVText.rdf
has service name text: parsePropertySequenceFromFSOLVText
is alive: true
provided by: organisation
  authoritative: true
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: parsePropertySequenceFromFSOLVText
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: solvation
    object type: FSOLV Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: sequence
    object type: PropertySequence
    has parameter type: simpleParameter

mmb.pcb.ub.es,getLigandIdFromPDBId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getLigandIdFromPDBId:2006-10-05T10-15-44Z
location URI: http://mmb2.pcb.ub.es:8080/PDBServices/getLigandIdFromPDBId
has service description text: Given a PDB code, returns all the ligands Id associated to it
has service description location: http://mmb2.pcb.ub.es:8080/PDBServices/rdf/getLigandIdFromPDBId.rdf
has service name text: getLigandIdFromPDBId
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getLigandIdFromPDBId
  performs task: operationTask
    type: Interactions
  input parameter: parameter
    has parameter name text: pdbCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: output
    has parameter type: collectionParameter
    object type: CommentedObject
    in namespaces: parameterNamespace
      type: PDB

mmb.pcb.ub.es,getPDBIdsFromLigandId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mmb.pcb.ub.es,getPDBIdsFromLigandId:2006-10-05T10-17-50Z
location URI: http://mmb2.pcb.ub.es:8080/PDBServices/getPDBIdsFromLigandId
has service description text: Given a Ligand code, returns all the PDB codes that contain this ligand
has service description location: http://mmb2.pcb.ub.es:8080/PDBServices/rdf/getPDBIdsFromLigandId.rdf
has service name text: getPDBIdsFromLigandId
is alive: true
provided by: organisation
  authoritative: false
  publisher: mmb.pcb.ub.es
has operation: operation
  has operation name text: getPDBIdsFromLigandId
  performs task: operationTask
    type: Interactions
  input parameter: parameter
    has parameter name text: ligandCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    has parameter name text: output
    has parameter type: collectionParameter
    object type: CommentedObject
    in namespaces: parameterNamespace
      type: PDB

brie4.cshl.org,GbrowseGetReferenceFasta
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:brie4.cshl.org,GbrowseGetReferenceFasta:2001-09-21T16-00-00Z
location URI: http://brie4.cshl.org:9320/cgi-bin/moby_server
has service description text: consumes EMBL id and returns a FASTA object
has service name text: GbrowseGetReferenceFasta
is alive: true
provided by: organisation
  authoritative: false
  publisher: brie4.cshl.org
has operation: operation
  has operation name text: GbrowseGetReferenceFasta
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: urn:lsid:biomoby.org:namespacetype:EMBL:2001-09-21T16-00-00Z
  output parameter: parameter
    object type: FASTA
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: urn:lsid:biomoby.org:namespacetype:EMBL:2001-09-21T16-00-00Z

www.weigelworld.org,ATH SNP Range
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.weigelworld.org,ATH_SNP_Range:2006-06-27T15-43-07Z
location URI: http://biomoby.weigelworld.org/cgi-bin/dispatcher.cgi
has service description text: Retrieve SNPs from 19 strains of Arabidopsis thaliana. SNPs were resequenced using whole genome oligonucleotide arrays from Perlegen science and were predicted using SVMs at the Weigel-Lab (MPI Tuebingen, Germany).
has service name text: ATH_SNP_Range
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.weigelworld.org
has operation: operation
  has operation name text: ATH_SNP_Range
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Position
    object type: Position
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: PredictedSNP
    has parameter type: collectionParameter
    object type: PredictedSNP
    in namespaces: parameterNamespace
      type: TAIR

www.weigelworld.org,MapSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.weigelworld.org,MapSequence:2006-06-27T16-34-37Z
location URI: http://biomoby.weigelworld.org/cgi-bin/dispatcher.cgi
has service description text: Mapping of nucleotide sequences to any fasta annotation like releases for genomes , genes, miRNAs and repeatable elements for any organism. Allows Mismatches.
has service name text: MapSequence
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.weigelworld.org
has operation: operation
  has operation name text: MapSequence
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: MappingSequence
    object type: MappingSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: MappedFeature
    has parameter type: collectionParameter
    object type: MappedFeature
    in namespaces: parameterNamespace
      type: Global

www.weigelworld.org,ATH SNP Coding
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.weigelworld.org,ATH_SNP_Coding:2006-06-27T14-51-18Z
location URI: http://biomoby.weigelworld.org/cgi-bin/dispatcher.cgi
has service description text: Retrieve SNPs in coding regions from 19 strains of Arabidopsis thaliana. SNPs were resequenced using whole genome oligonucleotide arrays from Perlegen science and were predicted using SVMs at the Weigel-Lab (MPI Tuebingen, Germany).
has service name text: ATH_SNP_Coding
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.weigelworld.org
has operation: operation
  has operation name text: ATH_SNP_Coding
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Object
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: CodingSNP
    has parameter type: collectionParameter
    object type: CodingSNP
    in namespaces: parameterNamespace
      type: AGI LocusCode

www.weigelworld.org,ATH Deletion Prediction
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.weigelworld.org,ATH_Deletion_Prediction:2006-06-27T16-56-46Z
location URI: http://biomoby.weigelworld.org/cgi-bin/dispatcher.cgi
has service description text: Retrieve deletions from 19 strains of Arabidopsis resequenced with whole genome oligonucleotide array from Perlegen Sciences.
has service name text: ATH_Deletion_Prediction
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.weigelworld.org
has operation: operation
  has operation name text: ATH_Deletion_Prediction
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Position
    object type: Position
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: DeletionPrediction
    has parameter type: collectionParameter
    object type: DeletionPrediction
    in namespaces: parameterNamespace
      type: TAIR

grinfo.net,getCoordinatesOfTaxon
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:grinfo.net,getCoordinatesOfTaxon:2006-10-12T09-39-23Z
location URI: http://hq6.grinfo.net:8080/tapir/pywrapper
has service description text: A MOBY service that accepts a taxon name (the full name of a species) and return the list of geographical coordinates where such species was collected in database: <<<databaseName>>>. An example of input name is: Vicia faba (which is is a species of bean (Fabaceae) native to north Africa and southwest Asia, and extensively cultivated elsewhere.) The service has also a paging mechanism: a client can ask either all results in one call, or ask to get separate results (see secondary inputs for paging).
has service name text: getCoordinatesOfTaxon
is alive: true
provided by: organisation
  authoritative: true
  publisher: grinfo.net
has operation: operation
  has operation name text: getCoordinatesOfTaxon
  performs task: operationTask
    type: TapirProvider
  input parameter: parameter
    has parameter name text: FullScientificName
    object type: TaxonScientificName
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: next
    has default value: 10
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: start
    has default value: 0
    datatype: Integer
  output parameter: parameter
    has parameter name text: Coordinates
    has parameter type: collectionParameter
    object type: Coordinates

orygenesdb.cirad.fr,getGeneWithFST
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getGeneWithFST:2007-07-31T15-54-54Z
location URI: http://sat.cirad.fr/sat/services/getGeneWithFST
has service description text: Get genes with FST in OryGenesDB.
has service name text: getGeneWithFST
is alive: true
provided by: organisation
  authoritative: true
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getGeneWithFST
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GCP_SimpleIdentifier
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Orygenesdb
  output parameter: parameter
    has parameter name text: GCP_Feature
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: Orygenesdb

orygenesdb.cirad.fr,getGeneIdByGO
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getGeneIdByGO:2007-10-25T13-41-54Z
location URI: http://sat.cirad.fr/sat/Orygenesdb/services/getGeneIdByGO
has service description text: This service takes a GO Id (ex : GO:0050661), or a list of gene id associated. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (OryGenesDB_Oryza or OryGenesDB_Arabidopsis).
has service name text: getGeneIdByGO
is alive: true
provided by: organisation
  authoritative: true
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getGeneIdByGO
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: go_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis
  output parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis

orygenesdb.cirad.fr,getFSTInfoByGeneId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getFSTInfoByGeneId:2007-06-18T13-12-17Z
location URI: http://sat.cirad.fr/sat/Orygenesdb/services/getFSTInfoByGeneId
has service description text: This service takes a gene identifier (ex : Os03g51030 or Os03g51030.1), or a list of them, and returns associated flanking sequence tags (fst) and fst informations about the gene. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (OryGenesDB_Oryza or OryGenesDB_Arabidopsis).
has service name text: getFSTInfoByGeneId
is alive: true
provided by: organisation
  authoritative: false
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getFSTInfoByGeneId
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis
  output parameter: parameter
    has parameter name text: fst_info
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis

orygenesdb.cirad.fr,getGeneByKeywords
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getGeneByKeywords:2007-07-31T15-50-32Z
location URI: http://sat.cirad.fr/sat/services/getGeneByKeywords
has service description text: Get genes in OryGenesDB by using keywords (strings).
has service name text: getGeneByKeywords
is alive: true
provided by: organisation
  authoritative: true
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getGeneByKeywords
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: String
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: GCP_Feature
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: Orygenesdb

orygenesdb.cirad.fr,searchBySequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,searchBySequence:2007-06-25T13-57-29Z
location URI: http://sat.cirad.fr/sat/services/searchBySequence
has service description text: Blast on OrygenesDB (orygenesdb.cirad.fr)
has service name text: searchBySequence
is alive: true
provided by: organisation
  authoritative: true
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: searchBySequence
  performs task: operationTask
    type: Alignment
  input parameter: parameter
    has parameter name text: GCP_SimpleSequence
    object type: GCP SimpleSequence
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Orygenesdb
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: evalue
    has default value: 1e-10
    datatype: String
    enum: 20
    enum: 10
    enum: 1
    enum: 1e-5
    enum: 1e-10
    enum: 1e-20
    enum: 1e-50
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: alignment
    min: 1
    max: 1000
    has default value: 20
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: type
    has default value: blastn
    datatype: String
    enum: blastn
    enum: blastp
    enum: blastx
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: db
    has default value: GenesinTIGRRicePseudomolecules:Genomicsequences
    datatype: String
    enum: Genes in TIGR Rice Pseudomolecules : Genomic sequences
    enum: Genes in TIGR Rice Pseudomolecules : CDS sequences
    enum: Genes in TIGR Rice Pseudomolecules : Protein sequences
    enum: All Rice BAC/PAC sequences in Genbank
    enum: cDNA Full Length (KOME) : Nucleic sequences
    enum: Oryza BAC Library Project : Nucleic sequences
  output parameter: parameter
    has parameter name text: GCP_MapFeature
    has parameter type: collectionParameter
    object type: GCP MapFeature

orygenesdb.cirad.fr,getGeneByGOTerm
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getGeneByGOTerm:2007-07-31T15-29-26Z
location URI: http://sat.cirad.fr/sat/services/getGeneByGOTerm
has service description text: Get genes in OryGenesDB by using GO term or GO ID.
has service name text: getGeneByGOTerm
is alive: true
provided by: organisation
  authoritative: true
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getGeneByGOTerm
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GCP_SimpleIdentifier
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Orygenesdb
  output parameter: parameter
    has parameter name text: GCP_Feature
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: Orygenesdb

orygenesdb.cirad.fr,getGeneInfoByGeneId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getGeneInfoByGeneId:2007-06-18T13-08-34Z
location URI: http://sat.cirad.fr/sat/Orygenesdb/services/getGeneInfoByGeneId
has service description text: This service takes a gene identifier (ex : Os03g51030 or Os03g51030.1), or a list of them, and returns associated informations about the gene. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (OryGenesDB_Oryza or OryGenesDB_Arabidopsis).
has service name text: getGeneInfoByGeneId
is alive: true
provided by: organisation
  authoritative: false
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getGeneInfoByGeneId
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis
  output parameter: parameter
    has parameter name text: gene_info
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis

orygenesdb.cirad.fr,getGeneIdByFST
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getGeneIdByFST:2007-06-25T15-17-27Z
location URI: http://sat.cirad.fr/sat/Orygenesdb/services/getGeneIdByFST
has service description text: This service takes a FST identifier (ex : CL524683), or a list of them, and returns a list of associated gene identifiers. The service works only with the rice specie (Oryza sativa namespace).
has service name text: getGeneIdByFST
is alive: true
provided by: organisation
  authoritative: false
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getGeneIdByFST
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: fst
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
  output parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza

orygenesdb.cirad.fr,getOTLFSTByGeneId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getOTLFSTByGeneId:2007-06-25T15-19-30Z
location URI: http://sat.cirad.fr/sat/Orygenesdb/services/getOTLFSTByGeneId
has service description text: This service takes a gene identifier (ex : Os03g51030 or Os03g51030.1), or a list of them, and returns associated flanking sequence tags (fst) in order to join the web service 'getGermplasmByFST' (oryzataglines.cirad.fr). The service works with Oryza sativa species only.
has service name text: getOTLFSTByGeneId
is alive: true
provided by: organisation
  authoritative: false
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getOTLFSTByGeneId
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
  output parameter: parameter
    has parameter name text: fst
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza

orygenesdb.cirad.fr,getGeneIdByLocation
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getGeneIdByLocation:2007-06-06T07-08-46Z
location URI: http://sat.cirad.fr/sat/Orygenesdb/services/getGeneIdByLocation
has service description text: Take a location (ex : 1:1..20000) and returns a list of gene identifiers. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (OryGenesDB_Oryza or OryGenesDB_Arabidopsis).
has service name text: getGeneIdByLocation
is alive: true
provided by: organisation
  authoritative: false
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getGeneIdByLocation
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: location
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis
  output parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis

orygenesdb.cirad.fr,getESTDetailsByGeneId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getESTDetailsByGeneId:2007-07-02T07-08-56Z
location URI: http://sat.cirad.fr/sat/Orygenesdb/services/getESTDetailsByGeneId
has service description text: This service takes a gene identifier (ex : Os01g18620 or Os01g18620.1), or a list of them, and returns EST details about this gene. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (OryGenesDB_Oryza or OryGenesDB_Arabidopsis).
has service name text: getESTDetailsByGeneId
is alive: true
provided by: organisation
  authoritative: false
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getESTDetailsByGeneId
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis
  output parameter: parameter
    has parameter name text: full_record_ESTDetails
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis

orygenesdb.cirad.fr,getSwissprotDetailsByGeneId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:orygenesdb.cirad.fr,getSwissprotDetailsByGeneId:2007-07-02T07-06-32Z
location URI: http://sat.cirad.fr/sat/Orygenesdb/services/getSwissprotDetailsByGeneId
has service description text: This service takes a gene identifier (ex : Os03g51030 or Os03g51030.1), or a list of them, and returns associated Swissprot details. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (OryGenesDB_Oryza or OryGenesDB_Arabidopsis).
has service name text: getSwissprotDetailsByGeneId
is alive: true
provided by: organisation
  authoritative: false
  publisher: orygenesdb.cirad.fr
has operation: operation
  has operation name text: getSwissprotDetailsByGeneId
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis
  output parameter: parameter
    has parameter name text: full_record_swissprotDetails
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: OryGenesDB Oryza
    in namespaces: parameterNamespace
      type: OryGenesDB Arabidopsis

eva.mpg.de,EvocName2ID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:eva.mpg.de,EvocName2ID:2006-07-05T10-06-10Z
location URI: http://onto.eva.mpg.de/cgi-bin/Dreck.pl
has service description text: Converts Evoc concept-names to EvocIDs
has service name text: EvocName2ID
is alive: true
provided by: organisation
  authoritative: true
  publisher: eva.mpg.de
has operation: operation
  has operation name text: EvocName2ID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: dummy
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: dummy
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EVOC

eva.mpg.de,EvocGetDIGDescriptionFromID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:eva.mpg.de,EvocGetDIGDescriptionFromID:2001-09-21T16-00-00Z
location URI: http://onto.eva.mpg.de/cgi-bin/Dreck.pl
has service description text: Returns an EvocDIGDescription given an EvocID
has service name text: EvocGetDIGDescriptionFromID
is alive: true
provided by: organisation
  authoritative: true
  publisher: eva.mpg.de
has operation: operation
  has operation name text: EvocGetDIGDescriptionFromID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: dummy
    object type: EvocID
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: dummy
    object type: EvocDIGDescription
    has parameter type: simpleParameter

eva.mpg.de,EvocID2Name
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:eva.mpg.de,EvocID2Name:2001-09-21T16-00-00Z
location URI: http://onto.eva.mpg.de/cgi-bin/Dreck.pl
has service description text: Returns the name of an Evoc Concept given its EvocID
has service name text: EvocID2Name
is alive: true
provided by: organisation
  authoritative: true
  publisher: eva.mpg.de
has operation: operation
  has operation name text: EvocID2Name
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: dummy
    object type: EvocID
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: dummy
    object type: Object
    has parameter type: simpleParameter

eva.mpg.de,EvocRetrieveCDNA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:eva.mpg.de,EvocRetrieveCDNA:2001-09-21T16-00-00Z
location URI: http://onto.eva.mpg.de/cgi-bin/Dreck.pl
has service description text: Returns a collection of CDNALibraries given an EvocDIGDescription
has service name text: EvocRetrieveCDNA
is alive: true
provided by: organisation
  authoritative: true
  publisher: eva.mpg.de
has operation: operation
  has operation name text: EvocRetrieveCDNA
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: dummy
    object type: EvocDIGDescription
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: dummy
    object type: Object
    has parameter type: simpleParameter

eva.mpg.de,EvocRealizeCDNA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:eva.mpg.de,EvocRealizeCDNA:2001-09-21T16-00-00Z
location URI: http://onto.eva.mpg.de/cgi-bin/Dreck.pl
has service description text: Returns a collection of EvocIDs given a CDNA Library ID
has service name text: EvocRealizeCDNA
is alive: true
provided by: organisation
  authoritative: true
  publisher: eva.mpg.de
has operation: operation
  has operation name text: EvocRealizeCDNA
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: dummy
    object type: CDNALibrary
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: dummy
    object type: Object
    has parameter type: simpleParameter

www.pcm.uam.es,getAminoAcidSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.pcm.uam.es,getAminoAcidSequence:2006-05-06T09-22-25Z
location URI: http://bioinfo.pcm.uam.es/cgi-bin/moby/dispatcher.cgi
has service description text: Retrieves an aminoacid sequence from an aminoacid database.
has service name text: getAminoAcidSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.pcm.uam.es
has operation: operation
  has operation name text: getAminoAcidSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: id
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: RefSeq
  output parameter: parameter
    has parameter name text: sequence
    object type: AminoAcidSequence
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: RefSeq

www.pcm.uam.es,runNCBIBlastp
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.pcm.uam.es,runNCBIBlastp:2006-05-06T09-25-30Z
location URI: http://bioinfo.pcm.uam.es/cgi-bin/moby/dispatcher.cgi
has service description text: Compares a protein sequence to a sequence database and calculates the statistical significance of matches using the Basic Local Alignment Tool (BLAST).
has service name text: runNCBIBlastp
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.pcm.uam.es
has operation: operation
  has operation name text: runNCBIBlastp
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: sequence
    object type: AminoAcidSequence
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: scores
    has default value: 25
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: dropoff
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: expected_threshold
    has default value: 10.0
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: filter
    has default value: false
    datatype: String
    enum: true
    enum: false
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: extendgap
    has default value: 2
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: alignments
    has default value: 15
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: matrix
    has default value: BLOSUM62
    datatype: String
    enum: BLOSUM45
    enum: BLOSUM62
    enum: BLOSUM80
    enum: PAM30
    enum: PAM70
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: database
    has default value: UniProt
    datatype: String
    enum: UniProt
    enum: Swiss-Prot
    enum: TrEMBL
    enum: PDB
    enum: RefSeq
    enum: RefSeq fungi
    enum: RefSeq invertebrate
    enum: RefSeq microbial
    enum: RefSeq mitochondrion
    enum: RefSeq plant
    enum: RefSeq plasmid
    enum: RefSeq plastid
    enum: RefSeq protozoa
    enum: RefSeq vertebrate_mammalian
    enum: RefSeq vertebrate_other
    enum: RefSeq viral
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: gapalign
    has default value: true
    datatype: String
    enum: true
    enum: false
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: opengap
    has default value: 11
    datatype: Integer
  output parameter: parameter
    has parameter name text: blast_report
    object type: BLAST-Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: UniProt
    in namespaces: parameterNamespace
      type: Swiss-Prot
    in namespaces: parameterNamespace
      type: TrEMBL
    in namespaces: parameterNamespace
      type: PDB
    in namespaces: parameterNamespace
      type: RefSeq

workflow.renci.unc.edu,Blastn
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:workflow.renci.unc.edu,Blastn:2006-11-28T16-14-26Z
location URI: http://workflow.renci.unc.edu:8080/biomoby/services/Blastn
has service description text: RENCI's impl for the blastn service
has service name text: Blastn
is alive: true
provided by: organisation
  authoritative: true
  publisher: workflow.renci.unc.edu
has operation: operation
  has operation name text: Blastn
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: sequenceId
    object type: Object
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: report
    object type: NCBI BLAST Text
    has parameter type: simpleParameter

workflow.renci.unc.edu,RegisterSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:workflow.renci.unc.edu,RegisterSequence:2006-11-28T16-14-35Z
location URI: http://workflow.renci.unc.edu:8080/biomoby/services/RegisterSequence
has service description text: RENCI's impl for the RegisterService interface
has service name text: RegisterSequence
is alive: true
provided by: organisation
  authoritative: true
  publisher: workflow.renci.unc.edu
has operation: operation
  has operation name text: RegisterSequence
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: sequence
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: output
    object type: Object
    has parameter type: simpleParameter

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY-S/ServiceInstances#workflow.renci.unc.edu,convertIdentifier2KeggID
type: serviceDescription
format: moby
location URI: http://workflow.renci.unc.edu:8080/biomoby/services/convertIdentifier2KeggID
has service description text: initial testing of a base service implementation for RENCI
has service name text: convertIdentifier2KeggID
is alive: true
provided by: organisation
  authoritative: true
  publisher: workflow.renci.unc.edu
has operation: operation
  has operation name text: convertIdentifier2KeggID
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: identifier
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GenBank
  output parameter: parameter
    has parameter name text: keggID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: KEGG

heaven.mshri.on.ca,GridService
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:heaven.mshri.on.ca,GridService:2001-09-21T16-00-00Z
location URI: http://heaven.mshri.on.ca/cgi-bin/BioGraphNet/MOBY/dispatcher.pl
has service description text: Synthetic Lethal Interactions from Tong et al. (2001) stored in the GRID.
has service name text: GridService
is alive: true
provided by: organisation
  authoritative: false
  publisher: heaven.mshri.on.ca
has operation: operation
  has operation name text: GridService
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: interactorID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: SGD LOCUS
  output parameter: parameter
    has parameter name text: partners
    has parameter type: collectionParameter
    object type: interaction partner

inblosam.com,extractGeneProteinNames
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:inblosam.com,extractGeneProteinNames:2001-09-21T16-00-00Z
location URI: http://inblosam.com/cgi-bin/services/bionlp_dispatcher.cgi
has service description text: Takes any text (abstract, full text article, etc.) and extracts names and abbreviations of genes and proteins, with a score (0-1, with 1 being highest).
has service name text: extractGeneProteinNames
is alive: true
provided by: organisation
  authoritative: false
  publisher: inblosam.com
has operation: operation
  has operation name text: extractGeneProteinNames
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    object type: text-plain
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter type: collectionParameter
    object type: Scored acronym string

moby.ucalgary.ca,runSmithWatermanVsPublicDBs
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:moby.ucalgary.ca,runSmithWatermanVsPublicDBs:2006-04-25T13-40-51Z
location URI: http://moby.ucalgary.ca/cgi-bin/MobyEd_dispatcher.cgi
has service description text: Runs the Smith Waterman pairwise alignment software for a query against all publically available DNA or AA
has service name text: runSmithWatermanVsPublicDBs
is alive: true
provided by: organisation
  authoritative: true
  publisher: moby.ucalgary.ca
has operation: operation
  has operation name text: runSmithWatermanVsPublicDBs
  performs task: operationTask
    type: Alignment
  input parameter: parameter
    has parameter name text: seq
    object type: GenericSequence
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: databaseType
    has default value: aa
    datatype: String
    enum: aa
    enum: dna
  output parameter: parameter
    has parameter name text: text
    object type: text-formatted
    has parameter type: simpleParameter

moby.ucalgary.ca,runBlastVsPublicDBs
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:moby.ucalgary.ca,runBlastVsPublicDBs:2006-04-25T13-40-19Z
location URI: http://moby.ucalgary.ca/cgi-bin/MobyEd_dispatcher.cgi
has service description text: Runs the BLAST pairwise alignment software for a query against all publically available DNA or AA sequence
has service name text: runBlastVsPublicDBs
is alive: true
provided by: organisation
  authoritative: true
  publisher: moby.ucalgary.ca
has operation: operation
  has operation name text: runBlastVsPublicDBs
  performs task: operationTask
    type: NCBI Blast
  input parameter: parameter
    has parameter name text: seq
    object type: GenericSequence
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: databaseType
    has default value: aa
    datatype: String
    enum: aa
    enum: dna
  output parameter: parameter
    has parameter name text: blast
    object type: NCBI BLAST Text
    has parameter type: simpleParameter

moby.ucalgary.ca,FromFastaToDNASequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:moby.ucalgary.ca,FromFastaToDNASequence:2006-08-01T03-47-51Z
location URI: http://moby.ucalgary.ca:8889/FromFastaToDNASequence
has service description text: Transforms FASTA text into DNASequence, primarily for service inter-operability
has service name text: FromFastaToDNASequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: moby.ucalgary.ca
has operation: operation
  has operation name text: FromFastaToDNASequence
  performs task: operationTask
    type: FormatConversion
  input parameter: parameter
    has parameter name text: inseq
    object type: FASTA NA
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: outseq
    object type: DNASequence
    has parameter type: simpleParameter

moby.ucalgary.ca,search Pfam
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:moby.ucalgary.ca,search_Pfam:2006-04-25T13-41-57Z
location URI: http://moby.ucalgary.ca/cgi-bin/MobyEd_dispatcher.cgi
has service description text: searches the query sequence against the Pfam protein domain database
has service name text: search_Pfam
is alive: true
provided by: organisation
  authoritative: true
  publisher: moby.ucalgary.ca
has operation: operation
  has operation name text: search_Pfam
  performs task: operationTask
    type: Alignment
  input parameter: parameter
    has parameter name text: seq
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: text
    object type: Decypher Text
    has parameter type: simpleParameter

bioinfo.inibap.org,GetMGISAccessionList
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioinfo.inibap.org,GetMGISAccessionList:2001-09-21T16-00-00Z
location URI: http://bioinfo.inibap.org/cgi-bin/dispatcher.cgi
has service description text: takes a collection of a unique input object related to accessions selection criteria and returns a collection of output objects representing accessions in the MGIS database.
has service name text: GetMGISAccessionList
is alive: true
provided by: organisation
  authoritative: false
  publisher: bioinfo.inibap.org
has operation: operation
  has operation name text: GetMGISAccessionList
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Query
    object type: MGIS ACCESSION
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter type: collectionParameter
    object type: MGIS id

bioinfo.inibap.org,Get TropGENE Distance Matrix
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioinfo.inibap.org,Get_TropGENE_Distance_Matrix:2001-09-21T16-00-00Z
location URI: http://bioinfo.inibap.org/cgi-bin/dispatcher.cgi
has service description text: returns different kinds of distance matrices built from a complete disjunctive matrix using R
has service name text: Get_TropGENE_Distance_Matrix
is alive: true
provided by: organisation
  authoritative: false
  publisher: bioinfo.inibap.org
has operation: operation
  has operation name text: Get_TropGENE_Distance_Matrix
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: Matrix
    object type: TropGENE Diversity Matrix
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TropGENE Diversity Matrix
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Method
    has default value: genetic
    datatype: String
    enum: genetic
    enum: euclidean
    enum: maximum
    enum: manhattan
    enum: canberra
    enum: binary
    enum: minkowski
  output parameter: parameter
    object type: TropGENE Distance Matrix
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TropGENE Distance Matrix

bioinfo.inibap.org,Get TropGENE Distance Matrix By Indices
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioinfo.inibap.org,Get_TropGENE_Distance_Matrix_By_Indices:2001-09-21T16-00-00Z
location URI: http://bioinfo.inibap.org/cgi-bin/dispatcher.cgi
has service description text: returns different kinds of distance matrices built from a complete disjunctive matrix using R. All these distances are of type d = p1 - s with s a similarity coefficient. (parameter: for instance 1 = Jaccard. for further information see http://cran.r-project.org/ package ade4 method dist.binary)
has service name text: Get_TropGENE_Distance_Matrix_By_Indices
is alive: true
provided by: organisation
  authoritative: false
  publisher: bioinfo.inibap.org
has operation: operation
  has operation name text: Get_TropGENE_Distance_Matrix_By_Indices
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: Matrix
    object type: TropGENE Diversity Matrix
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TropGENE Diversity Matrix
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Method
    min: 1
    max: 10
    has default value: 1
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Matrix_Type
    has default value: classic
    datatype: String
    enum: classic
    enum: disjunctive
  output parameter: parameter
    object type: TropGENE Distance Matrix
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TropGENE Distance Matrix

bioinfo.inibap.org,GetAccessionByPassport
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioinfo.inibap.org,GetAccessionByPassport:2007-04-04T15-11-04Z
location URI: http://bioinfo.inibap.org/cgi-bin/MobyServer.cgi
has service description text: takes a list of criteria and returns a collection of accessions in the MGIS database.
has service name text: GetAccessionByPassport
is alive: true
provided by: organisation
  authoritative: false
  publisher: bioinfo.inibap.org
has operation: operation
  has operation name text: GetAccessionByPassport
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: accession
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MGIS
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Group
    has parameter description text: Taxonomical group
    datatype: String
    enum: acuminata
    enum: balbisiana
    enum: AA
    enum: BB
    enum: AB
    enum: AAA
    enum: BBB
    enum: AAB
    enum: ABB
    enum: AS
    enum: AAS
    enum: AAAA
    enum: AAAB
    enum: AABB
    enum: ABBB
    enum: AAT
    enum: ABBT
    enum: homblei
    enum: gilletii
    enum: glaucum
    enum: perrieri
    enum: superbum
    enum: ventricosum
    enum: bukensis
    enum: fe'i
    enum: jackeyi
    enum: lolodensis
    enum: maclayi
    enum: peekelii
    enum: textilis
    enum: beccarii
    enum: borneensis
    enum: coccinea
    enum: gracilis
    enum: violascens
    enum: laterita
    enum: ornata
    enum: sanguinea
    enum: velutina
    enum: basjoo
    enum: boman
    enum: cheesmani
    enum: flaviflora
    enum: halabanensis
    enum: ingens
    enum: itinerans
    enum: nagensium
    enum: ochracea
    enum: schizocarpa
    enum: sikkimensis
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Ploidy
    min: 2
    max: 4
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Section
    has parameter description text: Taxonomical section
    datatype: String
    enum: Ensete
    enum: Australimusa
    enum: Calimusa
    enum: Eumusa
    enum: Rhodochlamys
    enum: Eumusa x Australimusa
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Collection
    has parameter description text: Code of the collection maintaining the germplasm: BPI (DAVAO), Philippines (DAV) IIHR, India (IIH) ITC, Belgium (ITC) NARO-KARI (KAWANDA), Uganda (KAW) KARI, Kenya (KIS) NARI-LALOKI, Papua New Guinea (LAL) FHIA, Honduras (LIM) CIRAD/FLHOR (GLP), Guadeloupe (NEU) CARBAP (NYOMBE), Cameroon (NYO) IITA (ONNE), Nigeria (ONN) PHU HO FCRC, Viet Nam (PHU) RIF-SOLOK, Indonesia (RIF) SCAU, China (SCU) QDPI-SOUTH JOHNSTONE, Australia (SJR) KAU, India (THR) NRCB, India (TRY)
    datatype: String
    enum: DAV
    enum: IIH
    enum: ITC
    enum: KAW
    enum: KIS
    enum: LAL
    enum: LIM
    enum: NEU
    enum: NYO
    enum: ONN
    enum: PHU
    enum: RIF
    enum: SCU
    enum: SJR
    enum: THR
    enum: TRY
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Origin
    has parameter description text: Country code of the country source of this germplasm: BRA=Brazil CHN=China CMR=Cameroon CRI=Costa Rica CUB=Cuba DOM=Dominican Rep. HND=Honduras IDN=Indonesia IND=India JAM=Jamaica KEN=Kenya MTQ=Martinique NGA=Nigeria PAN=Panama PHL=Philippines PNG=Papua New Guinea PRI=Puerto Rico SLB=Solomon Islands SGP=Singapore TTO=Trinidad and Tobago TZA=Tanzania UGA=Uganda USA=United States VNM=Viet Nam
    datatype: String
    enum: BRA
    enum: CHN
    enum: CMR
    enum: CRI
    enum: CUB
    enum: DOM
    enum: HND
    enum: IDN
    enum: IND
    enum: JAM
    enum: KEN
    enum: MTQ
    enum: NGA
    enum: PAN
    enum: PHL
    enum: PNG
    enum: PRI
    enum: SLB
    enum: SGP
    enum: TTO
    enum: TZA
    enum: UGA
    enum: USA
    enum: VNM
  output parameter: parameter
    has parameter name text: accession
    has parameter type: collectionParameter
    object type: GCP Germplasm
    in namespaces: parameterNamespace
      type: MGIS

bioinfo.inibap.org,Get TropGENE Nj Tree
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioinfo.inibap.org,Get_TropGENE_Nj_Tree:2001-09-21T16-00-00Z
location URI: http://bioinfo.inibap.org/cgi-bin/dispatcher.cgi
has service description text: returns a neighbour joining tree built from a distance matrix using R and creates a file in the NEXUS format
has service name text: Get_TropGENE_Nj_Tree
is alive: true
provided by: organisation
  authoritative: false
  publisher: bioinfo.inibap.org
has operation: operation
  has operation name text: Get_TropGENE_Nj_Tree
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    object type: TropGENE Distance Matrix
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: TropGENE Distance Matrix
  output parameter: parameter
    object type: Nj Tree
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Nj Tree

bioweb.pasteur.fr,Melting
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioweb.pasteur.fr,Melting:2001-09-21T16-00-00Z
location URI: http://bioweb.pasteur.fr/cgi-bin/Biomoby/MobyPasteur_dispatcher.cgi
has service description text: Melting: enthalpie, entropy and melting temperature (N. Le Novere)
has service name text: Melting
is alive: true
provided by: organisation
  authoritative: false
  publisher: bioweb.pasteur.fr
has operation: operation
  has operation name text: Melting
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: sequence
    object type: DNASequence
    has parameter type: simpleParameter
  output parameter: parameter
    object type: text-plain
    has parameter type: simpleParameter

greenphyl.cirad.fr,getPhylogenomicInformationByGeneId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:greenphyl.cirad.fr,getPhylogenomicInformationByGeneId:2007-06-26T06-40-04Z
location URI: http://sat.cirad.fr/sat/Greenphyldb/services/getPhylogenomicInformationByGeneId
has service description text: This service takes a gene identifier (ex : Os02g32430.1), or a list of them, and returns an image about the gene. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (GreenPhylDB_Oryza or GreenPhylDB_Arabidopsis).
has service name text: getPhylogenomicInformationByGeneId
is alive: true
provided by: organisation
  authoritative: true
  publisher: greenphyl.cirad.fr
has operation: operation
  has operation name text: getPhylogenomicInformationByGeneId
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: GreenPhylDB Arabidopsis
    in namespaces: parameterNamespace
      type: GreenPhylDB Oryza
  output parameter: parameter
    has parameter name text: full_record
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: GreenPhylDB Arabidopsis
    in namespaces: parameterNamespace
      type: GreenPhylDB Oryza

greenphyl.cirad.fr,GOST
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:greenphyl.cirad.fr,GOST:2007-06-19T09-18-22Z
location URI: http://sat.cirad.fr/sat/Greenphyldb_ws_perl/MobyServer.cgi
has service description text: GOST is a powerful tool developed to predict phylogenomic relationships between any plant gene and O. sativa / A. thaliana gene(s). This tool is able to rapidly integrate a new sequence into a model phylogeny developed on O.sativa and A.thaliana to infer orthologs relationships. It takes as input a protein sequence and a greenphyl family id (obtained by blast on greenphyldb) which was analysed. It returns ortholgs predictions with scores and a NHX tree.
has service name text: GOST
is alive: true
provided by: organisation
  authoritative: true
  publisher: greenphyl.cirad.fr
has operation: operation
  has operation name text: GOST
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GCP_SimpleSequence
    object type: GCP SimpleSequence
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter name text: GCP_Feature
    has parameter type: collectionParameter
    object type: GCP Feature
  input parameter: parameter
    has parameter name text: species
    datatype: String
    enum: ACERU
    enum: ACOCL
    enum: ADICA
    enum: AGRST
    enum: ALLCE
    enum: AMBTC
    enum: ANTFO
    enum: ANTMA
    enum: ARATH
    enum: ASPOF
    enum: ATRBE
    enum: AVESA
    enum: BETVU
    enum: BRANA
    enum: BRAOL
    enum: CALFE
    enum: CAPAN
    enum: CHAGL
    enum: CHLRE
    enum: CHLVU
    enum: CICAR
    enum: CITSI
    enum: COCONU
    enum: COFAR
    enum: CUCME
    enum: CUCSA
    enum: DAUCA
    enum: DIACA
    enum: DRIGR
    enum: EUCGG
    enum: FICCA
    enum: SOYBN
    enum: GOSHI
    enum: HELAN
    enum: HEVBR
    enum: HORVU
    enum: HUPLU
    enum: IPOBA
    enum: JASNU
    enum: LACSA
    enum: LENCUL
    enum: LIRTU
    enum: LOTJA
    enum: MALDO
    enum: MANES
    enum: MARPO
    enum: MEDSA
    enum: MESCR
    enum: MESVI
    enum: MORIN
    enum: MULAC
    enum: MUSAC
    enum: NEPOL
    enum: TOBAC
    enum: NICPL
    enum: NYMAL
    enum: OENHO
    enum: ORCHID
    enum: ORYZA
    enum: OSTTA
    enum: PANGI
    enum: PEA
    enum: PELHO
    enum: PENGL
    enum: PETCR
    enum: PETHY
    enum: PHAAO
    enum: PHAVU
    enum: PHYPA
    enum: PINKO
    enum: PINTH
    enum: PIPCE
    enum: POLVU
    enum: POPAL
    enum: PROWI
    enum: PSEAK
    enum: RICCO
  output parameter: parameter
    has parameter name text: GCP_SimpleClade
    object type: GCP SimpleClade
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: GCP_SimpleFeature
    has parameter type: collectionParameter
    object type: GCP SimpleFeature

greenphyl.cirad.fr,getGOSTSpeciesCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:greenphyl.cirad.fr,getGOSTSpeciesCode:2007-06-19T09-19-01Z
location URI: http://sat.cirad.fr/sat/Greenphyldb_ws_perl/MobyServer.cgi
has service description text: Send a crop name and return a species name compliant with the GOST species tree
has service name text: getGOSTSpeciesCode
is alive: true
provided by: organisation
  authoritative: true
  publisher: greenphyl.cirad.fr
has operation: operation
  has operation name text: getGOSTSpeciesCode
  performs task: operationTask
    type: Conversion
  input parameter: parameter
    has parameter name text: GCP_SimpleIdentifier
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: GCP_SimpleIdentifier
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier

greenphyl.cirad.fr,searchProteinFamilyBySequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:greenphyl.cirad.fr,searchProteinFamilyBySequence:2007-06-19T09-17-36Z
location URI: http://sat.cirad.fr/sat/Greenphyldb_ws_perl/MobyServer.cgi
has service description text: Find similarity (blastp) with greenphyl protein families
has service name text: searchProteinFamilyBySequence
is alive: true
provided by: organisation
  authoritative: true
  publisher: greenphyl.cirad.fr
has operation: operation
  has operation name text: searchProteinFamilyBySequence
  performs task: operationTask
    type: Alignment
  input parameter: parameter
    has parameter name text: GCP_SimpleSequence
    object type: GCP SimpleSequence
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GreenPhylDB
  output parameter: parameter
    has parameter name text: GCP_Feature
    has parameter type: collectionParameter
    object type: GCP Feature

greenphyl.cirad.fr,getGbrowseImageByGeneId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:greenphyl.cirad.fr,getGbrowseImageByGeneId:2007-06-26T06-33-56Z
location URI: http://sat.cirad.fr/sat/Greenphyldb/services/getGbrowseImageByGeneId
has service description text: This service takes a gene identifier (ex : Os03g51030), or a list of them, and returns an image about the gene. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (GreenPhylDB_Oryza or GreenPhylDB_Arabidopsis).
has service name text: getGbrowseImageByGeneId
is alive: true
provided by: organisation
  authoritative: true
  publisher: greenphyl.cirad.fr
has operation: operation
  has operation name text: getGbrowseImageByGeneId
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: GreenPhylDB Arabidopsis
    in namespaces: parameterNamespace
      type: GreenPhylDB Oryza
  output parameter: parameter
    has parameter name text: image
    has parameter type: collectionParameter
    object type: b64 Encoded PNG
    in namespaces: parameterNamespace
      type: GreenPhylDB Arabidopsis
    in namespaces: parameterNamespace
      type: GreenPhylDB Oryza

greenphyl.cirad.fr,getInterproDetailsByGeneId
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:greenphyl.cirad.fr,getInterproDetailsByGeneId:2007-06-26T14-22-59Z
location URI: http://sat.cirad.fr/sat/Greenphyldb/services/getInterproDetailsByGeneId
has service description text: This service takes a gene identifier (ex : At1g01010.1), or a list of them, and returns an image about the gene. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana)
has service name text: getInterproDetailsByGeneId
is alive: true
provided by: organisation
  authoritative: true
  publisher: greenphyl.cirad.fr
has operation: operation
  has operation name text: getInterproDetailsByGeneId
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: GreenPhylDB Arabidopsis
    in namespaces: parameterNamespace
      type: GreenPhylDB Oryza
  output parameter: parameter
    has parameter name text: ipr_details
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: GreenPhylDB Arabidopsis
    in namespaces: parameterNamespace
      type: GreenPhylDB Oryza

greenphyl.cirad.fr,getGeneIdByInterpro
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:greenphyl.cirad.fr,getGeneIdByInterpro:2007-06-07T08-33-01Z
location URI: http://sat.cirad.fr/sat/Greenphyldb/services/getGeneIdByInterpro
has service description text: Takes an interpro domain identifier (ie : IPR000005 ) and returns a collection of Gene id. The service works with the 2 species (Oryza sativa or Arabidopsis thaliana) according to the namespace given (GreenPhylDB_Oryza or GreenPhylDB_Arabidopsis).
has service name text: getGeneIdByInterpro
is alive: true
provided by: organisation
  authoritative: true
  publisher: greenphyl.cirad.fr
has operation: operation
  has operation name text: getGeneIdByInterpro
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ipr_id
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GreenPhylDB Arabidopsis
    in namespaces: parameterNamespace
      type: GreenPhylDB Oryza
  output parameter: parameter
    has parameter name text: gene_id
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: GreenPhylDB Arabidopsis
    in namespaces: parameterNamespace
      type: GreenPhylDB Oryza

www.tigr.org,FASTAsequenceLookup
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.tigr.org,FASTAsequenceLookup:2008-01-03T15-28-33Z
location URI: http://localhost:8080/Moby/services/FASTAsequenceLookup
has service description text: test for SSWAP FASTA sequence lookup resource check "Fill new Service when selected in browser panel
has service name text: FASTAsequenceLookup
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.tigr.org
has operation: operation
  has operation name text: FASTAsequenceLookup
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: tc_ID
    object type: Object
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: FASTA_NA
    has parameter type: collectionParameter
    object type: FASTA NA

www.tigr.org,getReporterImageByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.tigr.org,getReporterImageByAGI:2007-05-14T20-10-34Z
location URI: https://biomoby.tigr.org/cgi-bin/dispatcher.cgi
has service description text: Search TIGR Arabidopsis Reporter Image Database by Locus Name (or unassigned, such as At.chr5.3.34) Based on Arabidopsis project at: http://www.tigr.org/tdb/e2k1/ath1/qpcr/expression.php
has service name text: getReporterImageByAGI
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.tigr.org
has operation: operation
  has operation name text: getReporterImageByAGI
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: inputAGI
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: content
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: AGI LocusCode

www.bioinformatics.nl,MobyBlast submit
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,MobyBlast_submit:2006-03-01T18-36-21Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: Submit a Blast Job and retrieve a Job ID. Use Job ID with the RetrieveJob service from the same service provider to fetch the results.
has service name text: MobyBlast_submit
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: MobyBlast_submit
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: user
    object type: User
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl
  input parameter: parameter
    has parameter name text: input
    object type: BlastJob
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blast
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: S
    min: 1
    max: 3
    has default value: 3
    datatype: Integer
    enum: 1
    enum: 2
    enum: 3
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: K
    min: 0
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: E
    min: 0
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Y
    min: 0
    has default value: 0
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Z
    min: 0
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: y
    min: 0
    has default value: 0
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: g
    has default value: T
    datatype: String
    enum: T
    enum: F
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: t
    min: -1
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: e
    max: 10
    has default value: 10
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: J
    has default value: T
    datatype: String
    enum: T
    enum: F
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: W
    min: 0
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: v
    min: 1
    max: 200000
    has default value: 500
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: s
    has default value: F
    datatype: String
    enum: T
    enum: F
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: B
    min: 0
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: D
    min: 1
    max: 23
    has default value: 1
    datatype: Integer
    enum: 1
    enum: 2
    enum: 3
    enum: 4
    enum: 5
    enum: 6
    enum: 9
    enum: 10
    enum: 11
    enum: 12
    enum: 13
    enum: 14
    enum: 15
    enum: 16
    enum: 21
    enum: 22
    enum: 23
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: q
    max: 0
    has default value: -3
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: b
    min: 1
    has default value: 250
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: I
    has default value: T
    datatype: String
    enum: T
    enum: F
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: G
    min: 0
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: z
    min: 0
    has default value: 0
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: U
    has default value: F
    datatype: String
    enum: T
    enum: F
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: F
    has default value: T
    datatype: String
    enum: T
    enum: F
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: w
    min: 0
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: r
    min: 0
    has default value: 1
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: Q
    min: 1
    max: 23
    has default value: 1
    datatype: Integer
    enum: 1
    enum: 2
    enum: 3
    enum: 4
    enum: 5
    enum: 6
    enum: 9
    enum: 10
    enum: 11
    enum: 12
    enum: 13
    enum: 14
    enum: 15
    enum: 16
    enum: 21
    enum: 22
    enum: 23
  output parameter: parameter

www.bioinformatics.nl,MobyBlat help
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,MobyBlat_help:2006-03-01T18-36-38Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: Retrieve service options including a list of available databases. Input is an empty BioMOBY object. Output is an empty response with options documented in the ServiceNotes section of the header.
has service name text: MobyBlat_help
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: MobyBlat_help
  performs task: operationTask
    type: Retrieval
  output parameter: parameter
    has parameter name text: output
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blat

www.bioinformatics.nl,MobyBlast help
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,MobyBlast_help:2006-03-01T18-36-19Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: Retrieve service options including a list of BLASTable databases. Input is an empty BioMOBY object. Output is an empty response with options documented in the ServiceNotes section of the header.
has service name text: MobyBlast_help
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: MobyBlast_help
  performs task: operationTask
    type: Analysis
  output parameter: parameter
    has parameter name text: output
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blast

www.bioinformatics.nl,MobyGetz help
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,MobyGetz_help:2006-03-01T18-35-56Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: Retrieve service options including a list of available databases. Input is an empty BioMOBY object. Output is an empty response with options documented in the ServiceNotes section of the header.
has service name text: MobyGetz_help
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: MobyGetz_help
  performs task: operationTask
    type: Retrieval
  output parameter: parameter
    has parameter name text: output
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: srs.getz

www.bioinformatics.nl,MobyBlat
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,MobyBlat:2006-03-01T18-36-40Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: BioMOBY web service wrapper for the command line query tool 'BLAT'.
has service name text: MobyBlat
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: MobyBlat
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: input
    object type: BlatJob
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blat
  input parameter: parameter
    has parameter name text: user
    object type: User
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: out
    has default value: psl
    datatype: String
    enum: psl
    enum: pslx
    enum: axt
    enum: maf
    enum: sim4
    enum: wublast
    enum: blast
    enum: blast8
    enum: blast9
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: q
    has default value: dna
    datatype: String
    enum: dna
    enum: rna
    enum: prot
    enum: dnax
    enum: rnax
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: minScore
    min: 0
    has default value: 30
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: minIdentity
    min: 0
    max: 100
    has default value: 90
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: maxIntron
    min: 0
    has default value: 750000
    datatype: Integer
  output parameter: parameter
    has parameter name text: result
    object type: URL
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blat
  output parameter: parameter
    has parameter name text: output
    object type: BlatJob
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blat
  output parameter: parameter
    has parameter name text: user
    object type: User
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl

www.bioinformatics.nl,MobyBlast retrieve
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,MobyBlast_retrieve:2006-03-01T18-36-25Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: Retrieve the result of the MobyBlast_submit service. Input is the output of the MobyBlast_submit service.
has service name text: MobyBlast_retrieve
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: MobyBlast_retrieve
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: user
    object type: User
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl
  input parameter: parameter
    has parameter name text: input
    object type: BlastJob
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blast
  output parameter: parameter
    has parameter name text: user
    object type: User
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl
  output parameter: parameter
    has parameter name text: output
    object type: BlastJob
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blast
  output parameter: parameter
    has parameter name text: result
    object type: URL
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: blast

www.bioinformatics.nl,MobyGetz
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,MobyGetz:2006-03-01T18-35-58Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: BioMOBY web service interface to the command line query tool 'getz' from SRS.
has service name text: MobyGetz
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: MobyGetz
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: GetzJob
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: srs.getz
  input parameter: parameter
    has parameter name text: user
    object type: User
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl
  output parameter: parameter
    has parameter name text: result
    object type: URL
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: srs.getz
  output parameter: parameter
    has parameter name text: output
    object type: GetzJob
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: srs.getz
  output parameter: parameter
    has parameter name text: user
    object type: User
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl

www.bioinformatics.nl,Boomerang
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,Boomerang:2006-03-01T18-35-39Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: Returns your BioMOBY compliant input. Can be used to check client-server communication. Handles Simple, Collection and Secondary inputs.
has service name text: Boomerang
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: Boomerang
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: simple
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: parrot.boomerang.org
  input parameter: parameter
    has parameter name text: collection
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: parrot.boomerang.org
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: param2
    min: 0
    max: 100
    has default value: 1
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: param3
    has default value: test
    datatype: String
    enum: test
    enum: a
    enum: b
    enum: c
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: param4
    datatype: DateTime
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: param1
    min: 0
    max: 2
    has default value: 1
    datatype: Integer
    enum: 0
    enum: 1
    enum: 2
  output parameter: parameter
    has parameter name text: simple
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: parrot.boomerang.org
  output parameter: parameter
    has parameter name text: collection
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: parrot.boomerang.org

www.bioinformatics.nl,MobyBlast poll
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bioinformatics.nl,MobyBlast_poll:2006-03-01T18-36-23Z
location URI: https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
has service description text: Submit the result of the MobyBlast_submit service and obtain status info for the job.
has service name text: MobyBlast_poll
is alive: true
provided by: organisation
  authoritative: false
  publisher: www.bioinformatics.nl
has operation: operation
  has operation name text: MobyBlast_poll
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: job_id
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl
  output parameter: parameter
    has parameter name text: job_id
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: www.bioinformatics.nl
  output parameter: parameter
    has parameter name text: status
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: sge status

schematikon.org,RetrieveSegmentAttributes
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:schematikon.org,RetrieveSegmentAttributes:2001-09-21T16-00-00Z
location URI: http://142.150.40.181/cgi-bin/Schematikon_dispatcher.cgi
has service description text: Takes a Schematikon structure segment or structure motif ID and returns its attributes (PDB id, chain ID, chain position (starting residue), insert code, length)
has service name text: RetrieveSegmentAttributes
is alive: true
provided by: organisation
  authoritative: false
  publisher: schematikon.org
has operation: operation
  has operation name text: RetrieveSegmentAttributes
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: schematikon.org SS
    in namespaces: parameterNamespace
      type: schematikon.org SM
  output parameter: parameter
    object type: SchematikonSegmentAttributes
    has parameter type: simpleParameter

schematikon.org,PDBtoMotifID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:schematikon.org,PDBtoMotifID:2001-09-21T16-00-00Z
location URI: http://142.150.40.181/cgi-bin/Schematikon_dispatcher.cgi
has service description text: Takes a PDB id and returns all associated Schematikon Motif IDs
has service name text: PDBtoMotifID
is alive: true
provided by: organisation
  authoritative: false
  publisher: schematikon.org
has operation: operation
  has operation name text: PDBtoMotifID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    object type: SchematikonMotifID
    has parameter type: simpleParameter

schematikon.org,RetrieveStructureSegmentAminoAcidSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:schematikon.org,RetrieveStructureSegmentAminoAcidSequence:2001-09-21T16-00-00Z
location URI: http://142.150.40.181/cgi-bin/Schematikon_dispatcher.cgi
has service description text: Takes a Schematikon structure segment or structure motif ID and returns amino acid sequence
has service name text: RetrieveStructureSegmentAminoAcidSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: schematikon.org
has operation: operation
  has operation name text: RetrieveStructureSegmentAminoAcidSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: schematikon.org SS
    in namespaces: parameterNamespace
      type: schematikon.org SM
  output parameter: parameter
    object type: AminoAcidSequence
    has parameter type: simpleParameter

schematikon.org,RetrieveMotifSupport
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:schematikon.org,RetrieveMotifSupport:2001-09-21T16-00-00Z
location URI: http://142.150.40.181/cgi-bin/Schematikon_dispatcher.cgi
has service description text: Takes a Schematikon structure motif ID and returns support and unique support for that motif
has service name text: RetrieveMotifSupport
is alive: true
provided by: organisation
  authoritative: false
  publisher: schematikon.org
has operation: operation
  has operation name text: RetrieveMotifSupport
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: schematikon.org SM
  output parameter: parameter
    object type: SchematikonMotifSupport
    has parameter type: simpleParameter

schematikon.org,RetrieveMotifVoronoiNeighbours
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:schematikon.org,RetrieveMotifVoronoiNeighbours:2001-09-21T16-00-00Z
location URI: http://142.150.40.181/cgi-bin/Schematikon_dispatcher.cgi
has service description text: Takes a Schematikon structure motif ID and returns a list of neighbouring segments within the Voronoi domain of the motif
has service name text: RetrieveMotifVoronoiNeighbours
is alive: true
provided by: organisation
  authoritative: false
  publisher: schematikon.org
has operation: operation
  has operation name text: RetrieveMotifVoronoiNeighbours
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: schematikon.org SM
  output parameter: parameter
    object type: SchematikonSegmentID
    has parameter type: simpleParameter

schematikon.org,RetrieveStructureAnnotation
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:schematikon.org,RetrieveStructureAnnotation:2001-09-21T16-00-00Z
location URI: http://142.150.40.181/cgi-bin/Schematikon_dispatcher.cgi
has service description text: Takes a Schematikon structure segment or structure motif ID and returns DSSP, STRIDE, and PROMOTIF annotations
has service name text: RetrieveStructureAnnotation
is alive: true
provided by: organisation
  authoritative: false
  publisher: schematikon.org
has operation: operation
  has operation name text: RetrieveStructureAnnotation
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: schematikon.org SS
    in namespaces: parameterNamespace
      type: schematikon.org SM
  output parameter: parameter
    object type: SchematikonStructureAnnotation
    has parameter type: simpleParameter

schematikon.org,PDBtoSegmentID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:schematikon.org,PDBtoSegmentID:2001-09-21T16-00-00Z
location URI: http://142.150.40.181/cgi-bin/Schematikon_dispatcher.cgi
has service description text: Takes a PDB id and returns all associated Schematikon Segment IDs
has service name text: PDBtoSegmentID
is alive: true
provided by: organisation
  authoritative: false
  publisher: schematikon.org
has operation: operation
  has operation name text: PDBtoSegmentID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  output parameter: parameter
    object type: SchematikonSegmentID
    has parameter type: simpleParameter

schematikon.org,RetrieveMotifNeighbours
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:schematikon.org,RetrieveMotifNeighbours:2001-09-21T16-00-00Z
location URI: http://142.150.40.181/cgi-bin/Schematikon_dispatcher.cgi
has service description text: Takes a Schematikon structure motif ID and returns a list of neighbouring segments within 0.2 angstrom RMSD
has service name text: RetrieveMotifNeighbours
is alive: true
provided by: organisation
  authoritative: false
  publisher: schematikon.org
has operation: operation
  has operation name text: RetrieveMotifNeighbours
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: schematikon.org SM
  output parameter: parameter
    object type: SchematikonSegmentID
    has parameter type: simpleParameter

sirius.brc.mcw.edu,genbankToGene
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:sirius.brc.mcw.edu,genbankToGene:2001-09-21T16-00-00Z
location URI: http://sirius.brc.mcw.edu/cgi-bin/MobyEd_dispatcher.cgi
has service description text: Test service: matches NCBI_Acc to RGD gene RGD ID and Symbol, if available
has service name text: genbankToGene
is alive: true
provided by: organisation
  authoritative: false
  publisher: sirius.brc.mcw.edu
has operation: operation
  has operation name text: genbankToGene
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NCBI Acc
    in namespaces: parameterNamespace
      type: NCBI gi
    in namespaces: parameterNamespace
      type: NCBI NM
    in namespaces: parameterNamespace
      type: NCBI NP
  output parameter: parameter
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: RGD

urgi.versailles.inra.fr,PredotarP
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,PredotarP:2006-09-06T08-42-57Z
location URI: http://urgi.versailles.inra.fr/wsPredotar/services/ws
has service description text: A prediction service for identifying putative N-terminal targeting sequences (with Plant ID)
has service name text: PredotarP
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: PredotarP
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: AA
    object type: AminoAcidSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: Predotar_result
    object type: Predotar result
    has parameter type: simpleParameter

urgi.versailles.inra.fr,genefarmGetGeneIDByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetGeneIDByAGI:2006-09-05T16-18-20Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns Genefarm GENE_ID(s) corresponding to an AGI_LocusCode
has service name text: genefarmGetGeneIDByAGI
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetGeneIDByAGI
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: agi_locuscode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: GENEFARM_GeneID
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GENEFARM GeneID

urgi.versailles.inra.fr,genefarmGetBiochemicalFunctionByGeneID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetBiochemicalFunctionByGeneID:2006-09-05T16-14-57Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns the biochemical function of a specific gene
has service name text: genefarmGetBiochemicalFunctionByGeneID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetBiochemicalFunctionByGeneID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_GeneID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM GeneID
  output parameter: parameter
    has parameter name text: GENEFARM_BiochemicalFunction
    object type: GenefarmBiochemicalFunction
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM BiochemicalFunction

urgi.versailles.inra.fr,genefarmGetGeneIDByFamilyID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetGeneIDByFamilyID:2006-09-05T16-18-30Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns Genefarm GENE_ID(s) belonging to a Family
has service name text: genefarmGetGeneIDByFamilyID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetGeneIDByFamilyID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_FamilyID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM FamilyID
  output parameter: parameter
    has parameter name text: GENEFARM_GeneID
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GENEFARM GeneID

urgi.versailles.inra.fr,PhytoprotGetByAGICode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,PhytoprotGetByAGICode:2006-09-06T08-16-31Z
location URI: http://urgi.versailles.inra.fr/webservices/phytoprot.py
has service description text: Access to Phytoprot's clusters, by accession number
has service name text: PhytoprotGetByAGICode
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: PhytoprotGetByAGICode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AGI_LocusCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: db_used
    has default value: AvsA
    datatype: String
    enum: AvsA
    enum: AvsP
  output parameter: parameter
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: PHYTOPROT CLUSTER Id

urgi.versailles.inra.fr,PhytoprotGetByClusterID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,PhytoprotGetByClusterID:2006-09-06T08-16-34Z
location URI: http://urgi.versailles.inra.fr/webservices/phytoprot.py
has service description text: Access to Phytoprot's clusters by Cluster ID
has service name text: PhytoprotGetByClusterID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: PhytoprotGetByClusterID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: PHYTOPROT_CLUSTER_Id
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PHYTOPROT CLUSTER Id
  output parameter: parameter
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: PHYTOPROT CLUSTER Id

urgi.versailles.inra.fr,genefarmGetFamilyNameByFamilyID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetFamilyNameByFamilyID:2006-09-05T16-18-05Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns the family name related to a genefarm Family identifier
has service name text: genefarmGetFamilyNameByFamilyID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetFamilyNameByFamilyID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_FamilyID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM FamilyID
  output parameter: parameter
    has parameter name text: GENEFARM_FamilyName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM FamilyName

urgi.versailles.inra.fr,genefarmGetParalogsByGeneID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetParalogsByGeneID:2006-09-05T16-19-35Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns the GeneFarm gene_ID(s) belonging to same gene family as the given gene ID
has service name text: genefarmGetParalogsByGeneID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetParalogsByGeneID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_GeneID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM GeneID
  output parameter: parameter
    has parameter name text: GENEFARM_GeneID
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GENEFARM GeneID

urgi.versailles.inra.fr,genefarmGetGeneIDByKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetGeneIDByKeyword:2006-09-05T16-19-18Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns GeneFarm gene identifiers whose function matchs a keyword
has service name text: genefarmGetGeneIDByKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetGeneIDByKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: global_keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: GENEFARM_GeneID
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GENEFARM GeneID

urgi.versailles.inra.fr,genefarmGetGeneNamesByGeneID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetGeneNamesByGeneID:2006-09-05T16-19-27Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns the gene names corresponding to a gene ID
has service name text: genefarmGetGeneNamesByGeneID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetGeneNamesByGeneID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_GeneID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM GeneID
  output parameter: parameter
    has parameter name text: GENEFARM_GeneName
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GENEFARM GeneName

urgi.versailles.inra.fr,genefarmGetPlantByGeneID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetPlantByGeneID:2006-09-05T16-19-45Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns the organism name related to a gene id
has service name text: genefarmGetPlantByGeneID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetPlantByGeneID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_GeneID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM GeneID
  output parameter: parameter
    has parameter name text: String
    object type: String
    has parameter type: simpleParameter

urgi.versailles.inra.fr,genefarmGetFamilyByGeneID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetFamilyByGeneID:2006-09-05T16-17-04Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns the Genefarm Family identifier of a gene
has service name text: genefarmGetFamilyByGeneID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetFamilyByGeneID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_GeneID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM GeneID
  output parameter: parameter
    has parameter name text: GENEFARM_FamilyID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM FamilyID

urgi.versailles.inra.fr,PhytoprotGetByKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,PhytoprotGetByKeyword:2006-09-06T08-16-32Z
location URI: http://urgi.versailles.inra.fr/webservices/phytoprot.py
has service description text: Access to Phytoprot's clusters by keyword
has service name text: PhytoprotGetByKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: PhytoprotGetByKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Global_Keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: db_used
    has default value: AvsA
    datatype: String
    enum: AvsA
    enum: AvsP
  output parameter: parameter
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: AGI LocusCode

urgi.versailles.inra.fr,genefarmGetFamilyIDByKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetFamilyIDByKeyword:2006-09-05T16-17-21Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns family identifiers corresponding to a function keywordi
has service name text: genefarmGetFamilyIDByKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetFamilyIDByKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: global_keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: GENEFARM_FamilyID
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GENEFARM FamilyID

urgi.versailles.inra.fr,genefarmGetAnnotatorsForGene
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetAnnotatorsForGene:2006-09-05T16-10-10Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns the Genefarm annotators names for a given gene
has service name text: genefarmGetAnnotatorsForGene
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetAnnotatorsForGene
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_GeneID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM GeneID
  output parameter: parameter
    has parameter name text: GENEFARM_Annotator
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GENEFARM Annotator

urgi.versailles.inra.fr,PhytoprotGetByAminoAcidSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,PhytoprotGetByAminoAcidSequence:2006-09-06T08-16-35Z
location URI: http://urgi.versailles.inra.fr/webservices/phytoprot.py
has service description text: Access to Phytoprot's clusters by amino acid sequence
has service name text: PhytoprotGetByAminoAcidSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: PhytoprotGetByAminoAcidSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AA
    object type: AminoAcidSequence
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: db_used
    has default value: AvsA
    datatype: String
    enum: AvsA
    enum: AvsP
  output parameter: parameter
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: PHYTOPROT CLUSTER Id

urgi.versailles.inra.fr,genefarmGetGeneIDByGeneName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetGeneIDByGeneName:2006-09-05T16-19-08Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns Genefarm GENE_ID(s) corresponding to a gene name
has service name text: genefarmGetGeneIDByGeneName
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetGeneIDByGeneName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_GeneName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM GeneName
  output parameter: parameter
    has parameter name text: GENEFARM_GeneID
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GENEFARM GeneID

urgi.versailles.inra.fr,PhytoprotGetPyramid
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,PhytoprotGetPyramid:2006-09-06T08-16-38Z
location URI: http://urgi.versailles.inra.fr/webservices/phytoprot.py
has service description text: Retrieve a family's Pyramid file from Phytoprot database.
has service name text: PhytoprotGetPyramid
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: PhytoprotGetPyramid
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: PHYTOPROT_CLUSTER_Id
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PHYTOPROT CLUSTER Id
  output parameter: parameter
    has parameter name text: gif
    object type: b64 encoded gif
    has parameter type: simpleParameter

urgi.versailles.inra.fr,PredotarA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,PredotarA:2006-09-06T08-42-55Z
location URI: http://urgi.versailles.inra.fr/wsPredotar/services/ws
has service description text: A prediction service for identifying putative N-terminal targeting sequences (without Plant ID)
has service name text: PredotarA
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: PredotarA
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: AA
    object type: AminoAcidSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: PredotarResult
    object type: Predotar result
    has parameter type: simpleParameter

urgi.versailles.inra.fr,genefarmGetCultivarByGeneID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,genefarmGetCultivarByGeneID:2006-09-05T16-16-03Z
location URI: http://urgi.versailles.inra.fr/wsGenefarm/services/ws
has service description text: returns the cultivar related to a gene id
has service name text: genefarmGetCultivarByGeneID
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: genefarmGetCultivarByGeneID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: GENEFARM_GeneID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GENEFARM GeneID
  output parameter: parameter
    has parameter name text: String
    object type: String
    has parameter type: simpleParameter

urgi.versailles.inra.fr,PhytoprotGetXDom
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:urgi.versailles.inra.fr,PhytoprotGetXDom:2006-09-06T08-16-36Z
location URI: http://urgi.versailles.inra.fr/webservices/phytoprot.py
has service description text: Retrieval a family's XDOM from Phytoprot database.
has service name text: PhytoprotGetXDom
is alive: true
provided by: organisation
  authoritative: false
  publisher: urgi.versailles.inra.fr
has operation: operation
  has operation name text: PhytoprotGetXDom
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: PHYTOPROT_CLUSTER_Id
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PHYTOPROT CLUSTER Id
  output parameter: parameter
    has parameter type: collectionParameter
    object type: b64 encoded gif

mncn.csic.es,getCoordinatesOfTaxon
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mncn.csic.es,getCoordinatesOfTaxon:2006-10-11T14-40-25Z
location URI: http://synthesys.csic.es:8081/tapir/pywrapper
has service description text: A MOBY service that accepts a taxon name (the full name of a species) and return the list of geographical coordinates where such species was collected in database: <<<databaseName>>>. An example of input name is: Vicia faba (which is is a species of bean (Fabaceae) native to north Africa and southwest Asia, and extensively cultivated elsewhere.) The service has also a paging mechanism: a client can ask either all results in one call, or ask to get separate results (see secondary inputs for paging).
has service name text: getCoordinatesOfTaxon
is alive: true
provided by: organisation
  authoritative: true
  publisher: mncn.csic.es
has operation: operation
  has operation name text: getCoordinatesOfTaxon
  performs task: operationTask
    type: TapirProvider
  input parameter: parameter
    has parameter name text: FullScientificName
    object type: TaxonScientificName
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: start
    has default value: 0
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: next
    has default value: 10
    datatype: Integer
  output parameter: parameter
    has parameter name text: Coordinates
    has parameter type: collectionParameter
    object type: Coordinates

www.iris.irri.org,test2
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,test2:2007-02-12T01-17-38Z
location URI: http://www.iris.irri.org/mobyds/services/getGermplasmByPhenotype
has service description text: cbcb
has service name text: test2
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: test2
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Object
    object type: Object
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: Allele
    object type: Allele
    has parameter type: simpleParameter

www.iris.irri.org,getGermplasmIntelectualProperty
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmIntelectualProperty:2007-08-03T08-01-38Z
location URI: http://www.iris.irri.org/moby/services/getCitation
has service description text: This service returns germplasm's Intelectual Property using germplasm Id.
has service name text: getGermplasmIntelectualProperty
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmIntelectualProperty
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: germplasmId
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Germplasm
  output parameter: parameter
    has parameter name text: germplasmIntelectuaPropertyObj
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: IRIS Germplasm

www.iris.irri.org,getOntologyTermDetails
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getOntologyTermDetails:2006-11-29T01-19-04Z
location URI: http://koios.generationcp.org/mobychado/services/getOntologyTermDetails
has service description text: Retrieves the ontology term details given the Ontology Term LSID. Sample input: urn:lsid:generationcp.org:OntologyTerm:GCP_200.0000001
has service name text: getOntologyTermDetails
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getOntologyTermDetails
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ontology
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology
  output parameter: parameter
    has parameter name text: ontology
    object type: GCP OntologyTerm
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology

www.iris.irri.org,testReg
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,testReg:2007-06-04T02-24-29Z
location URI: http://www.iris.irri.org/mobyds/services/test_reg
has service description text: dags test for registration
has service name text: testReg
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: testReg
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: trait_ontology
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology
  output parameter: parameter
    has parameter name text: germplasm
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: IRIS Mutant

www.iris.irri.org,getStudies
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getStudies:2006-11-29T01-19-38Z
location URI: http://www.iris.irri.org/moby/services/getStudies
has service description text: Retrieves a list of associated studies given a GCP entity. Sample input germplasm id: 50533
has service name text: getStudies
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getStudies
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: queryString
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: study
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: ICIS Study

www.iris.irri.org,getGermplasmDetails
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmDetails:2006-11-29T01-17-27Z
location URI: http://www.iris.irri.org/moby/services/getGermplasmDetails
has service description text: Retrieves full details about specified rice germplasm. Sample input germplasm id: 50533
has service name text: getGermplasmDetails
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmDetails
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: germplasm
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ICIS Germplasm
  output parameter: parameter
    has parameter name text: germplasm
    object type: GCP Germplasm
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ICIS Germplasm

www.iris.irri.org,getGermplasmByPhenotype
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmByPhenotype:2007-09-07T08-22-08Z
location URI: http://www.iris.irri.org/mobydsws/services/getGermplasmByPhenotypeCount
has service description text: test
has service name text: getGermplasmByPhenotype
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmByPhenotype
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: trait_ontology
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology
  output parameter: parameter
    has parameter name text: Phenotype
    has parameter type: collectionParameter
    object type: GCP Germplasm
    in namespaces: parameterNamespace
      type: IRIS Ontology

www.iris.irri.org,getDataset
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getDataset:2007-09-07T05-12-56Z
location URI: http://www.iris.irri.org/mobyDataConsumer/getDataset
has service description text: return a collection of GCP_SimpleIdentifier objects for WhiteBoard
has service name text: getDataset
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getDataset
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: sessionId
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: whiteBoardObj
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier

www.iris.irri.org,getGermplasmBiologicalStatus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmBiologicalStatus:2007-08-03T08-00-55Z
location URI: http://www.iris.irri.org/moby/services/getGermplasmBiologicalStatus
has service description text: This service returns germplasm's Biological Status using germplasm Id.
has service name text: getGermplasmBiologicalStatus
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmBiologicalStatus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: germplasmId
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Germplasm
  output parameter: parameter
    has parameter name text: germplasmBiologicalStatusObj
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: IRIS Germplasm

www.iris.irri.org,getOntologyTermByName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getOntologyTermByName:2006-11-29T01-18-19Z
location URI: http://koios.generationcp.org/mobychado/services/getOntologyTermByName
has service description text: Retrieves ontology term ids given the ontology term name. Sample input: junction
has service name text: getOntologyTermByName
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getOntologyTermByName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: String
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: ontology
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: IRIS Ontology

www.iris.irri.org,testReg2
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,testReg2:2007-06-07T05-10-10Z
location URI: http://www.iris.irri.org/mobyds/services/test_reg
has service description text: dags test for registration
has service name text: testReg2
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: testReg2
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: trait_ontology
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology
  output parameter: parameter
    has parameter name text: germplasm
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: IRIS Mutant

www.iris.irri.org,getGermplasmAcquisitionDate
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmAcquisitionDate:2007-08-03T08-00-13Z
location URI: http://www.iris.irri.org/moby/services/getGermplasmAcquisitionDate
has service description text: This service returns germplasm's acquisition date using germplasm Id.
has service name text: getGermplasmAcquisitionDate
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmAcquisitionDate
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: germplasmId
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Germplasm
  output parameter: parameter
    has parameter name text: germplasmDateObj
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Germplasm

www.iris.irri.org,getGermplasmByTrait
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmByTrait:2007-02-22T01-28-18Z
location URI: http://www.iris.irri.org/mobydsws/services/getGermplasmByTrait
has service description text: returns a list of mutant germplasm identifiers phenotyped by trait
has service name text: getGermplasmByTrait
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmByTrait
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: trait_ontology
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology
  output parameter: parameter
    has parameter name text: germplasms
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: IRIS Mutant

www.iris.irri.org,getGermplasmByPhenotypeCount
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmByPhenotypeCount:2007-03-09T01-51-52Z
location URI: http://www.iris.irri.org/mobydsws/services/getGermplasmByPhenotypeCount
has service description text: test
has service name text: getGermplasmByPhenotypeCount
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmByPhenotypeCount
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: trait_ontology
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology
  output parameter: parameter
    has parameter name text: countPhenotype
    object type: Integer
    has parameter type: simpleParameter

www.iris.irri.org,getGermplasmByAccession
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmByAccession:2006-11-29T01-13-32Z
location URI: http://www.iris.irri.org/moby/services/getGermplasmByAccession
has service description text: Retrieves the list of all germplasm identifiers (belonging to the Management Neighbourhood) of the given Accession. Sample input accession id 313137
has service name text: getGermplasmByAccession
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmByAccession
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: accession
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS GermplasmNeighborhood
  output parameter: parameter
    has parameter name text: germplasm
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: ICIS Germplasm

www.iris.irri.org,getGermplasmByName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmByName:2006-11-29T01-14-47Z
location URI: http://www.iris.irri.org/moby/services/getGermplasmByName
has service description text: Retrieve list of germplasm identifiers whose names match the given search string. For example, you may input the search string of a germplasm name "IR 64"
has service name text: getGermplasmByName
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmByName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: queryString
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ICIS Germplasm
  output parameter: parameter
    has parameter name text: germplasm
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: ICIS Germplasm

www.iris.irri.org,test3
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,test3:2007-02-13T03-47-43Z
location URI: http://www.iris.irri.org/mobyds/services/getGermplasmByPhenotype
has service description text: bbbb
has service name text: test3
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: test3
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Object
    object type: Object
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: Allele
    object type: Allele
    has parameter type: simpleParameter

www.iris.irri.org,getAccessionByGermplasm
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getAccessionByGermplasm:2006-11-29T01-10-44Z
location URI: http://www.iris.irri.org/moby/services/getAccessionByGermplasm
has service description text: Retrieves the accession that a given germplasm belongs to. Sample input id 1636780.
has service name text: getAccessionByGermplasm
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getAccessionByGermplasm
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: germplasm
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ICIS Germplasm
  output parameter: parameter
    has parameter name text: accession
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS GermplasmNeighborhood

www.iris.irri.org,getGermplasmByNameCount
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getGermplasmByNameCount:2007-03-09T01-52-13Z
location URI: http://www.iris.irri.org/mobydsws/services/getGermplasmByNameCount
has service description text: test
has service name text: getGermplasmByNameCount
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getGermplasmByNameCount
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: trait_ontology
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology
  output parameter: parameter
    has parameter name text: countPhenotype
    object type: Integer
    has parameter type: simpleParameter

www.iris.irri.org,testWorking
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,testWorking:2007-02-13T02-48-00Z
location URI: http://chimay/cgi-bin/work_in_progress/hapmap_dispatcher.cgi
has service description text: 'Test
has service name text: testWorking
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: testWorking
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: dummy
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Ontology
  output parameter: parameter
    has parameter name text: dummy
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IRIS Mutant

www.iris.irri.org,getSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.iris.irri.org,getSequence:2007-09-08T10-14-59Z
location URI: http://www.iris.irri.org/moby/getSequence
has service description text: Service Call for Koios White Board
has service name text: getSequence
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.iris.irri.org
has operation: operation
  has operation name text: getSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: sequenceID
    object type: GCP SimpleIdentifier
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: sequenceObj
    object type: GCP Sequence
    has parameter type: simpleParameter

vbd.crop.org.cn,getFASTArice
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:vbd.crop.org.cn,getFASTArice:2001-09-21T16-00-00Z
location URI: http://219.239.34.196/axis/services/getFASTArice
has service description text: Provide rice data with fasta format
has service name text: getFASTArice
is alive: true
provided by: organisation
  authoritative: true
  publisher: vbd.crop.org.cn
has operation: operation
  has operation name text: getFASTArice
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: sequenceID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: CAAS RICE
  output parameter: parameter
    has parameter name text: Fasta
    object type: FASTA AA
    has parameter type: simpleParameter

mips.gsf.de,getClonesForChromosome
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getClonesForChromosome:2006-10-04T13-15-04Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getClonesForChromosome
has service description text: Retrieves all clone names for given chromosome number
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getClonesForChromosome.rdf
has service name text: getClonesForChromosome
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getClonesForChromosome
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Chromosome Number
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Clone Medicago

mips.gsf.de,MIPSBlastBetterE13
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,MIPSBlastBetterE13:2006-05-24T10-58-57Z
location URI: http://mips.gsf.de/cgi-bin/proj/thal/contribute/MOBY/Service.cgi
has service description text: executes blast against MAtDB Arabidopsis protein coding genes with a cutoff E-value of E=1e-13
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: MIPSBlastBetterE13
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: MIPSBlastBetterE13
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: QuerySequence
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: BlastReport
    object type: WU BLAST Text
    has parameter type: simpleParameter

mips.gsf.de,getContigsByFreeText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getContigsByFreeText:2006-10-04T13-20-50Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getContigsByFreeText
has service description text: parses Element Names out of any text-xml or text-formatted (output sorted by alphabet)
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getContigsByFreeText.rdf
has service name text: getContigsByFreeText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getContigsByFreeText
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Contig Medicago
    in namespaces: parameterNamespace
      type: MIPS Contig Maize
    in namespaces: parameterNamespace
      type: Global Keyword
    in namespaces: parameterNamespace
      type: MIPS Contig Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS Contig Rice
  output parameter: parameter
    has parameter name text: output
    has parameter type: collectionParameter
    object type: text-xml
    in namespaces: parameterNamespace
      type: MIPS Contig Rice
    in namespaces: parameterNamespace
      type: MIPS Contig Medicago
    in namespaces: parameterNamespace
      type: MIPS Contig Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS Contig Maize

mips.gsf.de,id2link
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,id2link:2006-05-17T13-28-16Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: returns URL(s) of a www resource where further information for an object id can be found. The mapping is based on the object namespace
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: id2link
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: id2link
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: inputObject
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: EMBL
    in namespaces: parameterNamespace
      type: GO
    in namespaces: parameterNamespace
      type: IntAct
    in namespaces: parameterNamespace
      type: INTERPRO
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: NASC code
    in namespaces: parameterNamespace
      type: PMID
    in namespaces: parameterNamespace
      type: PO acc
    in namespaces: parameterNamespace
      type: PO term
    in namespaces: parameterNamespace
      type: UniProt
  output parameter: parameter
    has parameter name text: outputURL
    has parameter type: collectionParameter
    object type: Link
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: EMBL
    in namespaces: parameterNamespace
      type: GO
    in namespaces: parameterNamespace
      type: IntAct
    in namespaces: parameterNamespace
      type: INTERPRO
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: NASC code
    in namespaces: parameterNamespace
      type: PMID
    in namespaces: parameterNamespace
      type: PO acc
    in namespaces: parameterNamespace
      type: PO term
    in namespaces: parameterNamespace
      type: UniProt

mips.gsf.de,getClonesByName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getClonesByName:2006-10-05T11-15-37Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getClonesByName
has service description text: Retrieves annotation for given clone name.
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getClonesByName.rdf
has service name text: getClonesByName
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getClonesByName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Clone Medicago
    in namespaces: parameterNamespace
      type: MIPS Clone Arabidopsis
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Clone Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS Clone Medicago

mips.gsf.de,BlastFastaVsArabiProteincoding
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,BlastFastaVsArabiProteincoding:2006-10-07T08-03-01Z
location URI: http://mips.gsf.de/cgi-bin/proj/thal/contribute/MOBY/Service.cgi
has service description text: blast Fasta sequence against MAtDB Arabidopsis protein coding genes
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: BlastFastaVsArabiProteincoding
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: BlastFastaVsArabiProteincoding
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: QuerySequenceFasta
    object type: FASTA
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: BlastReport
    object type: WU BLAST Text
    has parameter type: simpleParameter

mips.gsf.de,getElementsByName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementsByName:2006-10-05T11-23-14Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getElementsByName
has service description text: Retrieves a basic genetic element by its exact name
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getElementsByName.rdf
has service name text: getElementsByName
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getElementsByName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: IMGA
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Rice

mips.gsf.de,getAGILocusCodes
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getAGILocusCodes:2006-05-19T12-41-41Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: returns a collection of AGI_LocusCodes which are somehow related to a given Keyword in their MAtDB annotation (e.g. "wuschel")
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getAGILocusCodes
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getAGILocusCodes
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: search_keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: result_codes
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: AGI LocusCode

mips.gsf.de,getMIPSFastaProteinSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getMIPSFastaProteinSequence:2006-05-17T13-09-15Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: retrieves MIPS Arabidopsis Protein Sequence in FASTA format from MAtDB related to a given AGI-Code
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getMIPSFastaProteinSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getMIPSFastaProteinSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AGICode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: ProteinSequence
    object type: FASTA
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode

mips.gsf.de,getMIPSArabidopsisProteinSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getMIPSArabidopsisProteinSequence:2006-06-20T11-56-22Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: retrieves a collection of MIPS Arabidopsis protein sequences related to a given Keyword or AGI-Code from MAtDB (e.g."wuschel", "At2g42410")
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getMIPSArabidopsisProteinSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getMIPSArabidopsisProteinSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: ProteinSequences
    has parameter type: collectionParameter
    object type: GenericSequence
    in namespaces: parameterNamespace
      type: AGI LocusCode

mips.gsf.de,getEmblDNASequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getEmblDNASequence:2006-05-17T13-10-31Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: returns a collection of EMBL DNA Sequences related to a given AGI-Code/Keyword/EMBL Accession (e.g. "At2g17950","Superman","AJ012310")
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getEmblDNASequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getEmblDNASequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: search_term
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: output_DNASequences
    has parameter type: collectionParameter
    object type: CommentedDNASequence
    in namespaces: parameterNamespace
      type: EMBL

mips.gsf.de,getElementsByFreeText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementsByFreeText:2006-10-05T11-21-13Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getElementsByFreeText
has service description text: Retrieves a list of basic genetic elements with names matching the input string
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getElementsByFreeText.rdf
has service name text: getElementsByFreeText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getElementsByFreeText
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: Global Keyword
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Maize

mips.gsf.de,getLinksToEntriesInPlaNetDBs
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getLinksToEntriesInPlaNetDBs:2006-05-17T13-34-16Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: gets all Links to entries in PlaNet partner databases which refer to the given AGI Locus Code (e.g. At2g17950)
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getLinksToEntriesInPlaNetDBs
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getLinksToEntriesInPlaNetDBs
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: AGICode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: outputURL
    object type: Link
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode

mips.gsf.de,getElementAnnotation
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementAnnotation:2006-10-05T11-17-05Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getElementAnnotation
has service description text: Retrieve annotation for the given genetic element
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getElementAnnotation.rdf
has service name text: getElementAnnotation
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getElementAnnotation
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
  output parameter: parameter
    has parameter name text: output
    has parameter type: collectionParameter
    object type: GeneticElement
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago

mips.gsf.de,getClonesByFreeText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getClonesByFreeText:2006-10-04T12-55-58Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getClonesByFreeText
has service description text: Retrieves all clone annotation for given search text
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getClonesByFreeText.rdf
has service name text: getClonesByFreeText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getClonesByFreeText
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Clone Medicago
    in namespaces: parameterNamespace
      type: Global Keyword
    in namespaces: parameterNamespace
      type: MIPS Clone Arabidopsis
    in namespaces: parameterNamespace
      type: IMGA
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Clone Medicago
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: MIPS Clone Arabidopsis

mips.gsf.de,getGeneticElementNameByFreeText
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getGeneticElementNameByFreeText:2006-10-05T11-25-50Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getGeneticElementNameByFreeText
has service description text: retrieves genetic element names related to the given keyword from all MIPS databases (arabidopsis, medicago, maize, rice)
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getGeneticElementNameByFreeText.rdf
has service name text: getGeneticElementNameByFreeText
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getGeneticElementNameByFreeText
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: output
    has parameter type: collectionParameter
    object type: Object

mips.gsf.de,getMIPSArabidopsisAnnotationAsGFF3
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getMIPSArabidopsisAnnotationAsGFF3:2006-10-05T11-27-24Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getMIPSArabidopsisAnnotationAsGFF3
has service description text: Retrieves the MIPS Arabidopsis Genetic Element Annotation from matdb2 identified by the given name/code/id in GFF3-format
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getMIPSArabidopsisAnnotationAsGFF3.rdf
has service name text: getMIPSArabidopsisAnnotationAsGFF3
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getMIPSArabidopsisAnnotationAsGFF3
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
  output parameter: parameter
    has parameter name text: output
    object type: GFF3
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis

mips.gsf.de,getElementsForContig
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementsForContig:2006-10-05T11-24-04Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getElementsForContig
has service description text: retrieve all genetic elements for given contig as collection of plain-text objects (eg. mth2-11e1)
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getElementsForContig.rdf
has service name text: getElementsForContig
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getElementsForContig
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Contig Rice
    in namespaces: parameterNamespace
      type: MIPS Contig Maize
    in namespaces: parameterNamespace
      type: MIPS Contig Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS Contig Medicago
  output parameter: parameter
    has parameter name text: output
    has parameter type: collectionParameter
    object type: text-xml
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Maize

mips.gsf.de,getJICGeneTrapImageByAgi
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getJICGeneTrapImageByAgi:2006-09-12T08-31-21Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/ArawsServices.cgi
has service description text: Wrapper for ATIDB GeneTrap images. From gene report gets GT flanking sequences, parses details page for link to pattern detail page. From each of these, it gets up to 3 images (for 'seedling', 'leaf' and 'mature' patterns). Example Input:AT5G01800.
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getJICGeneTrapImageByAgi.rdf
has service name text: getJICGeneTrapImageByAgi
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getJICGeneTrapImageByAgi
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: incomingAGI
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: outImages
    has parameter type: collectionParameter
    object type: SimpleAnnotatedJPEGImage
    in namespaces: parameterNamespace
      type: GeneTraps line

mips.gsf.de,getAllGeneticElements
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getAllGeneticElements:2006-10-04T12-52-37Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getAllGeneticElements
has service description text: Retrieves all genetic element names matching given search string (for example all AGI locus codes for search string "At")
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getAllGeneticElements.rdf
has service name text: getAllGeneticElements
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getAllGeneticElements
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
  output parameter: parameter
    has parameter name text: output
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago

mips.gsf.de,getElement
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElement:2006-10-05T11-20-15Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getElement
has service description text: Retrieves detailed information including all subelements for a genetic element name from the MIPS PlantsDB.
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getElement.rdf
has service name text: getElement
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getElement
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Rice
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago

mips.gsf.de,getUnsplicedSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getUnsplicedSequence:2006-10-05T11-44-14Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getUnsplicedSequence
has service description text: Retrieves Unspliced sequence for a genetic element name
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getUnsplicedSequence.rdf
has service name text: getUnsplicedSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getUnsplicedSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Maize
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis

mips.gsf.de,extractElementSequences
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,extractElementSequences:2006-08-01T09-07-09Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: parses Element Sequences (MIPS PlantsDB) out of any text-xml or text-formatted and gives them back as GenericSequences (output sorted by alphabet)
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: extractElementSequences
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: extractElementSequences
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: input_xml
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: IMGA
  output parameter: parameter
    has parameter name text: Sequences
    has parameter type: collectionParameter
    object type: GenericSequence
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: IMGA

mips.gsf.de,extractAGILocusCodes
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,extractAGILocusCodes:2006-08-01T09-17-27Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: parses AGI-LocusCodes out of Blast Results or any text-xml or text-formatted (output sorted by alphabet)
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: extractAGILocusCodes
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: extractAGILocusCodes
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: input
    object type: text-plain
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: AGICodes
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: AGI LocusCode

mips.gsf.de,getElementsOfType
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementsOfType:2006-10-05T11-24-52Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getElementsOfType
has service description text: Retrieves a list of all genetic elements of a given element type
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getElementsOfType.rdf
has service name text: getElementsOfType
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getElementsOfType
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Rice

mips.gsf.de,extractElementNames
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,extractElementNames:2006-08-01T09-17-30Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: This service extracts the names of genetic elements from XML documents returned on a query by he MIPS PlantsDB
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: extractElementNames
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: extractElementNames
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: input
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: IMGA
  output parameter: parameter
    has parameter name text: ElementNames
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: IMGA

mips.gsf.de,getCosBBHForGene
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getCosBBHForGene:2001-09-21T16-00-00Z
location URI: http://146.107.217.167:1234/axis/services/GetCosByGeneService
has service description text: Retrieves conserved ortholog set (by bbh) for a AGI locus code
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getCosBBHForGene
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getCosBBHForGene
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode

mips.gsf.de,BlastRawSeqVsArabiProteincoding
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,BlastRawSeqVsArabiProteincoding:2006-10-09T06-24-25Z
location URI: http://mips.gsf.de/cgi-bin/proj/thal/contribute/MOBY/Service.cgi
has service description text: blast raw sequence (no special format like FASTA) against MAtDB Arabidopsis protein coding genes
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: BlastRawSeqVsArabiProteincoding
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: BlastRawSeqVsArabiProteincoding
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: QuerySequence
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: BlastReport
    object type: WU BLAST Text
    has parameter type: simpleParameter

mips.gsf.de,MIPSBlast
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,MIPSBlast:2006-05-24T10-58-54Z
location URI: http://mips.gsf.de/cgi-bin/proj/thal/contribute/MOBY/Service.cgi
has service description text: executes blast against MAtDB Arabidopsis protein coding genes
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: MIPSBlast
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: MIPSBlast
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: QuerySequence
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: BlastReport
    object type: WU BLAST Text
    has parameter type: simpleParameter

mips.gsf.de,getSplicedSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getSplicedSequence:2006-10-09T06-46-26Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getSplicedSequence
has service description text: Retrieves Spliced sequence for a genetic element name
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getSplicedSequence.rdf
has service name text: getSplicedSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getSplicedSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: IMGA

mips.gsf.de,getGeneticElementsOfType
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getGeneticElementsOfType:2006-10-05T11-26-36Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getGeneticElementsOfType
has service description text: Retrieve all genetic elements for given element type
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getGeneticElementsOfType.rdf
has service name text: getGeneticElementsOfType
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getGeneticElementsOfType
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
  output parameter: parameter
    has parameter name text: output
    has parameter type: collectionParameter
    object type: GeneticElement
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Rice

mips.gsf.de,getProteinSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getProteinSequence:2006-10-05T11-28-23Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getProteinSequence
has service description text: Retrieves Protein sequence for a genetic element name
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getProteinSequence.rdf
has service name text: getProteinSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getProteinSequence
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: IMGA
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Medicago
    in namespaces: parameterNamespace
      type: MIPS GE Rice
    in namespaces: parameterNamespace
      type: MIPS GE Maize
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis

mips.gsf.de,MIPSBlastXMLClickableImage
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,MIPSBlastXMLClickableImage:2006-05-24T10-58-55Z
location URI: http://mips.gsf.de/cgi-bin/proj/thal/contribute/MOBY/Service.cgi
has service description text: executes NCBI blast against MAtDB Arabidopsis protein coding genes, returns XML output with a clickable hit graph
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: MIPSBlastXMLClickableImage
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: MIPSBlastXMLClickableImage
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: QuerySequence
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: XMLBlastReport
    object type: NCBI Blast XML Gif Map
    has parameter type: simpleParameter

mips.gsf.de,getEmblAccession
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getEmblAccession:2006-05-17T10-06-08Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: returns collection of EMBL Accessions related to a given Keyword (e.g. "superman")
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getEmblAccession
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getEmblAccession
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: search_keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: output_accessions
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: EMBL

mips.gsf.de,MIPSBlastXML
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,MIPSBlastXML:2006-05-24T10-58-52Z
location URI: http://mips.gsf.de/cgi-bin/proj/thal/contribute/MOBY/Service.cgi
has service description text: executes NCBI blast against MAtDB Arabidopsis protein coding genes, returns XML output
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: MIPSBlastXML
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: MIPSBlastXML
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: QuerySequence
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: XMLBlastReport
    object type: NCBI Blast XML
    has parameter type: simpleParameter

mips.gsf.de,getTmHMMforAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getTmHMMforAGI:2006-05-17T13-28-56Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: retrieves pre-calculated TmHMM results for given AGI code
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getTmHMMforAGI
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getTmHMMforAGI
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: AGICode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: tmHMM_results
    has parameter type: collectionParameter
    object type: text-formatted
    in namespaces: parameterNamespace
      type: AGI LocusCode

mips.gsf.de,BlastRawSeqVsArabiContigs
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,BlastRawSeqVsArabiContigs:2006-05-24T10-59-11Z
location URI: http://mips.gsf.de/cgi-bin/proj/thal/contribute/MOBY/Service.cgi
has service description text: blast raw sequence (no special format like FASTA) against MAtDB Arabidopsis Contigs
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: BlastRawSeqVsArabiContigs
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: BlastRawSeqVsArabiContigs
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: QuerySequence
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: BlastReport
    object type: WU BLAST Text
    has parameter type: simpleParameter

mips.gsf.de,getRikenRAPIDImageByAgi
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getRikenRAPIDImageByAgi:2006-09-12T08-38-48Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/ArawsServices.cgi
has service description text: Wrapper for the "RIKEN Arabidopsis Phenome Information Database" (RAPID). RAPID line IDs are mapped to AGI codes according to http://rarge.gsc.riken.jp/phenome/?Mode=List. The according line details page is parsed for images and phenotype description. Example input: At3g58650.
has service name text: getRikenRAPIDImageByAgi
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getRikenRAPIDImageByAgi
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: incomingAGI
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: outImages
    has parameter type: collectionParameter
    object type: SimpleAnnotatedJPEGImage
    in namespaces: parameterNamespace
      type: RAPID line

mips.gsf.de,getMIPSArabidopsisAnnotationAsGFF
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getMIPSArabidopsisAnnotationAsGFF:2006-04-06T10-49-09Z
location URI: http://mips.gsf.de/cgi-bin/proj/thal/contribute/MOBY/Service.cgi
has service description text: retrieves the MIPS Arabidopsis Genetic Element Annotation from MAtDB2 identified by the given name/code/id in GFF format. Guaranteed to retrieve a single entry which is the current up-to-date version
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getMIPSArabidopsisAnnotationAsGFF
is alive: true
provided by: organisation
  authoritative: true
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getMIPSArabidopsisAnnotationAsGFF
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: inputAraName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis
  output parameter: parameter
    has parameter name text: annotation
    object type: GFF
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS GE Arabidopsis

mips.gsf.de,getCos
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getCos:2006-09-05T13-53-32Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/RebeccaService.cgi
has service description text: Calculates conserved ortholog sets for a group of organisms. Inputs are the SimapDataset ids for a seed (eg. 14 for arabidopsis) and a group of nonseed genomes (eg. 416, 442 for rice/maize). Calculation is based on Simap.
has service name text: getCos
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getCos
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: seed
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: SimapDataset
  input parameter: parameter
    has parameter name text: nonseeds
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: SimapDataset
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: minscore
    min: 1
    max: 1000
    has default value: 600
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: maxnext
    min: 0
    max: 999
    has default value: 500
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: minsize
    min: 0
    max: 20
    has default value: 0
    datatype: Integer
  output parameter: parameter
    has parameter name text: COSresult
    object type: text-xml
    has parameter type: simpleParameter

mips.gsf.de,getTairRefsByAgi
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getTairRefsByAgi:2006-08-04T07-50-41Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/ArawsServices.cgi
has service description text: Returns collection of pubmed ids for a given agi locus code. Based on the literature collection of TAIR (arabidopsis.org).
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/all_mips_services.rdf
has service name text: getTairRefsByAgi
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getTairRefsByAgi
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: inputAgi
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: knownReferences
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: PMID

mips.gsf.de,getContigsByName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getContigsByName:2006-10-05T11-13-26Z
location URI: http://mips.gsf.de/proj/plant/webapp/axis/services/getContigsByName
has service description text: Retrieves Contigs list for a contig name
has service description location: http://mips.gsf.de/proj/planet/moby/RDF/getContigsByName.rdf
has service name text: getContigsByName
is alive: true
provided by: organisation
  authoritative: false
  publisher: mips.gsf.de
has operation: operation
  has operation name text: getContigsByName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Contig Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS Contig Maize
    in namespaces: parameterNamespace
      type: MIPS Contig Medicago
    in namespaces: parameterNamespace
      type: MIPS Contig Rice
  output parameter: parameter
    has parameter name text: output
    object type: text-xml
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MIPS Contig Maize
    in namespaces: parameterNamespace
      type: MIPS Contig Arabidopsis
    in namespaces: parameterNamespace
      type: MIPS Contig Medicago
    in namespaces: parameterNamespace
      type: MIPS Contig Rice

bioversity.org,getCoordinatesOfTaxon
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioversity.org,getCoordinatesOfTaxon:2007-12-10T16-25-54Z
location URI: http://tapir.grinfo.net/pywrapper/pywrapper
has service description text: A MOBY service that accepts a taxon name (the full name of a species) and return the list of geographical coordinates where such species was collected in database: <<<databaseName>>>. An example of input name is: Vicia faba (which is is a species of bean (Fabaceae) native to north Africa and southwest Asia, and extensively cultivated elsewhere.) The service has also a paging mechanism: a client can ask either all results in one call, or ask to get separate results (see secondary inputs for paging).
has service name text: getCoordinatesOfTaxon
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioversity.org
has operation: operation
  has operation name text: getCoordinatesOfTaxon
  performs task: operationTask
    type: TapirProvider
  input parameter: parameter
    has parameter name text: FullScientificName
    object type: TaxonScientificName
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: next
    has default value: 10
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: start
    has default value: 0
    datatype: Integer
  output parameter: parameter
    has parameter name text: Coordinates
    has parameter type: collectionParameter
    object type: Coordinates

oryzataglines.cirad.fr,getPhenotypeByGermplasm
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:oryzataglines.cirad.fr,getPhenotypeByGermplasm:2007-06-21T11-21-11Z
location URI: http://sat.cirad.fr/sat/Oryzatagline/services/getPhenotypeByGermplasm
has service description text: This service takes a plant name (ex : AAAA06), or a list of them, and returns full record about phenotype. The service works only with the rice specie (OryzaTagLine namespace).
has service name text: getPhenotypeByGermplasm
is alive: true
provided by: organisation
  authoritative: false
  publisher: oryzataglines.cirad.fr
has operation: operation
  has operation name text: getPhenotypeByGermplasm
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: plant_name
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryzaTagLine
  output parameter: parameter
    has parameter name text: full_record
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: OryzaTagLine

oryzataglines.cirad.fr,getFSTByGermplasm
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:oryzataglines.cirad.fr,getFSTByGermplasm:2007-06-27T11-03-10Z
location URI: http://sat.cirad.fr/sat/Oryzatagline/services/getFSTByGermplasm
has service description text: This service takes a germplasm Id (or plant name, ex : ABAA06), or a list of them, and returns associated FST Id. The service works only with the rice species (OryzaTagLine namespace).
has service name text: getFSTByGermplasm
is alive: true
provided by: organisation
  authoritative: false
  publisher: oryzataglines.cirad.fr
has operation: operation
  has operation name text: getFSTByGermplasm
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: plant_name
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryzaTagLine
  output parameter: parameter
    has parameter name text: fst
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryzaTagLine

oryzataglines.cirad.fr,getGermplasmByFST
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:oryzataglines.cirad.fr,getGermplasmByFST:2007-06-27T11-15-41Z
location URI: http://sat.cirad.fr/sat/Oryzatagline/services/getGermplasmByFST
has service description text: This service takes a FST Id (ex : AAAA06), or a list of them, and returns associated germplasm (plant name). The service works only with the rice specie (OryzaTagLine namespace).
has service name text: getGermplasmByFST
is alive: true
provided by: organisation
  authoritative: false
  publisher: oryzataglines.cirad.fr
has operation: operation
  has operation name text: getGermplasmByFST
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: fst
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryzaTagLine
  output parameter: parameter
    has parameter name text: plant_name
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryzaTagLine

oryzataglines.cirad.fr,getExpressionByGermplasm
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:oryzataglines.cirad.fr,getExpressionByGermplasm:2007-06-27T11-39-59Z
location URI: http://sat.cirad.fr/sat/Oryzatagline/services/getExpressionByGermplasm
has service description text: This service takes a germplasm Id (or a plant name, ex : AAAA06), or a list of them, and returns full record about expression. The service works only with the rice specie (OryzaTagLine namespace).
has service name text: getExpressionByGermplasm
is alive: true
provided by: organisation
  authoritative: false
  publisher: oryzataglines.cirad.fr
has operation: operation
  has operation name text: getExpressionByGermplasm
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: plant_name
    has parameter type: collectionParameter
    object type: GCP SimpleIdentifier
    in namespaces: parameterNamespace
      type: OryzaTagLine
  output parameter: parameter
    has parameter name text: full_record_expression
    has parameter type: collectionParameter
    object type: GCP Feature
    in namespaces: parameterNamespace
      type: OryzaTagLine

seedgenes.org,SeedGenesEmbryoImageByAgiCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:seedgenes.org,SeedGenesEmbryoImageByAgiCode:2006-09-19T18-29-28Z
location URI: http://206.225.85.121:8081/axis/services/SeedGenesEmbryoImageByAgiCode
has service description text: SeedGenesEmbryoImageByAgiCode web service will take an AGI_LocusCode and return a Nomarski microscopy image of an Arabidopsis seed with the embryo at the typical stage that development is arrested for a knock-out mutant at that gene.
has service name text: SeedGenesEmbryoImageByAgiCode
is alive: true
provided by: organisation
  authoritative: true
  creator: yuying@vbi.vt.edu, allan@vbi.vt.edu
  publisher: seedgenes.org
has operation: operation
  has operation name text: SeedGenesEmbryoImageByAgiCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input_agi
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: SeedGenesEmbryoImage
    object type: SimpleAnnotatedJPEGImage
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: SeedGenes

imb.uq.edu.au,IMB Get MaximallyRepresentativeCluster
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:imb.uq.edu.au,IMB_Get_MaximallyRepresentativeCluster:2006-05-09T05-19-31Z
location URI: http://research1t.imb.uq.edu.au/cgi-bin/web_services_dispatcher.cgi
has service description text: IMB get maximally representative cluster details
has service name text: IMB_Get_MaximallyRepresentativeCluster
is alive: true
provided by: organisation
  authoritative: false
  publisher: imb.uq.edu.au
has operation: operation
  has operation name text: IMB_Get_MaximallyRepresentativeCluster
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: A
    object type: Global Keyword
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: B
    object type: String
    has parameter type: simpleParameter

gabi.rzpd.de,checkGabiPDBySequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:gabi.rzpd.de,checkGabiPDBySequence:2006-08-25T09-07-30Z
location URI: http://gabi.rzpd.de/biomoby/services/checkGabiPDBySequence
has service description text: This service blasts a sequence against the gabi database and returns the Blast-output in XML-format. Blast-parameters are: -v 25 -F T -m 7 -e 0.0000000001 -p blastn.
has service description location: http://gabi.rzpd.de/projects/webservices/checkGabiPDBySequence.rdf
has service name text: checkGabiPDBySequence
is alive: true
provided by: organisation
  authoritative: true
  publisher: gabi.rzpd.de
has operation: operation
  has operation name text: checkGabiPDBySequence
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: sequence
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: xml
    object type: text-xml
    has parameter type: simpleParameter

gabi.rzpd.de,gabiCheckMaterialByGenBankAccession
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:gabi.rzpd.de,gabiCheckMaterialByGenBankAccession:2006-08-28T09-24-29Z
location URI: http://gabi.rzpd.de/biomoby/services/gabiCheckMaterialByGenBankAccession
has service description text: This service checks if a given identifier is available at the RZPD as clone.
has service description location: http://gabi.rzpd.de/projects/webservices/gabiCheckMaterialByGenBankAccession.rdf
has service name text: gabiCheckMaterialByGenBankAccession
is alive: true
provided by: organisation
  authoritative: true
  publisher: gabi.rzpd.de
has operation: operation
  has operation name text: gabiCheckMaterialByGenBankAccession
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: identifier
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: GenBank
  output parameter: parameter
    has parameter name text: material
    has parameter type: collectionParameter
    object type: BasicClone

gabi.rzpd.de,extractSubjectID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:gabi.rzpd.de,extractSubjectID:2006-08-25T09-10-03Z
location URI: http://gabi.rzpd.de/biomoby/services/extractSubjectID
has service description text: This service extracts the identifiers of subjects from Blast-output in XML-format.
has service description location: http://gabi.rzpd.de/projects/webservices/extractSubjectID.rdf
has service name text: extractSubjectID
is alive: true
provided by: organisation
  authoritative: true
  publisher: gabi.rzpd.de
has operation: operation
  has operation name text: extractSubjectID
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: xml
    object type: text-xml
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: identifiers
    has parameter type: collectionParameter
    object type: Object

gabi.rzpd.de,gabiCheckMaterialByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:gabi.rzpd.de,gabiCheckMaterialByAGI:2006-08-28T09-25-47Z
location URI: http://gabi.rzpd.de/biomoby/services/gabiCheckMaterialByAGI
has service description text: This service checks if a given identifier is available at the RZPD as clone.
has service description location: http://gabi.rzpd.de/projects/webservices/gabiCheckMaterialByAGI.rdf
has service name text: gabiCheckMaterialByAGI
is alive: true
provided by: organisation
  authoritative: true
  publisher: gabi.rzpd.de
has operation: operation
  has operation name text: gabiCheckMaterialByAGI
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: identifier
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: material
    has parameter type: collectionParameter
    object type: BasicClone

www.bcgsc.bc.ca,getAvailableBioinformaticsProgramsFromChinook
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.bcgsc.bc.ca,getAvailableBioinformaticsProgramsFromChinook:2001-09-21T16-00-00Z
location URI: http://134.87.4.53:8080/axis/services/ChinookMobyImpl
has service description text: Retrieve available bioinformatics from Chinook
has service name text: getAvailableBioinformaticsProgramsFromChinook
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.bcgsc.bc.ca
has operation: operation
  has operation name text: getAvailableBioinformaticsProgramsFromChinook
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: dummy
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global
  output parameter: parameter
    has parameter name text: dummy
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global

bioserv.rpbs.jussieu.fr,HBonds
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,HBonds:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: This service will identify Hydrogen bonds occurring in a protein structure. It requires a PDB file. The identification of the H-bonds is a 2-step process: 1. Explicit hydrogen coordinates are calculated. 2. Hydrogen bonds are located, on the basis of a minimal inter-atomic distance between the hydrogen and the acceptor, and on a correct angle between the donor-hydrogen bond and the hydrogen-acceptor pseudo bond. It is possible to locate H-bonds for backbone or side chains only. The service will also propose a rasmol script to visualize the H-bonds identified.
has service name text: HBonds
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: HBonds
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    object type: b64 encoded PDB
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: hbMaxAngle
    has default value: 60
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: hbMaxdist
    has default value: 2.5
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: hbMode
    datatype: Integer
    enum: 0
    enum: 2
    enum: 1
  output parameter: parameter
    object type: text-formatted
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter type: collectionParameter
    object type: HBond Pair

bioserv.rpbs.jussieu.fr,psiBlast
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,psiBlast:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Execute a blast using blastpgp over PDB, a protein structure data base.
has service name text: psiBlast
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: psiBlast
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: i
    object type: FASTA
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: M
    datatype: String
    enum: BLOSUM62
    enum: BLOSUM45
    enum: BLOSUM80
    enum: PAM30
    enum: PAM70
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: other_options
    datatype: String
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: d
    has default value: /data/www/htdocs/Automat/bank/pdbaa
    datatype: String
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: e
    has default value: 10
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: G
    has default value: 11
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: E
    has default value: 1
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: j
    has default value: 100
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: v
    has default value: 500
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: b
    has default value: 250
    datatype: Integer
  output parameter: parameter
    object type: WU BLAST Text
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,BasicBuilder
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,BasicBuilder:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Protein simple builder. This will take an amino acid sequence, a sequence of letters describing the conformation of the backbone of each amino acid, and return a PDB file. In its current version, this is a facility to obtain a PDB file to undergo further processing using external tools. A more complete and accurate builder is under construction.
has service name text: BasicBuilder
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: BasicBuilder
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    has parameter name text: seq
    object type: FASTA
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter name text: 3D
    object type: FASTA
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: noHydrogens
    min: 0
    max: 1
    has default value: 0
    datatype: Integer
  output parameter: parameter
    object type: b64 encoded PDB
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,Stride
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,Stride:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Protein secondary structure identification with STRIDE.
has service name text: Stride
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: Stride
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    object type: b64 encoded PDB
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter type: collectionParameter
    object type: String

bioserv.rpbs.jussieu.fr,ASA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,ASA:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Accessible Surface Area calculation
has service name text: ASA
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: ASA
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    has parameter name text: ipdb
    object type: b64 encoded PDB
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: rH2O
    has default value: 1.4
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: ASAlimit
    has default value: 0.25
    datatype: Float
  output parameter: parameter
    has parameter name text: log
    object type: text-formatted
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: ClassVector
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: RelativeAccessVector
    object type: String
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,psiPred
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,psiPred:2001-09-21T16-00-00Z
location URI: http://bioserv.rbps.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: A highly accurate method for protein secondary structure prediction
has service name text: psiPred
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: psiPred
  performs task: operationTask
    type: ProteinStructureModeling
  input parameter: parameter
    object type: FASTA AA
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: database
    has default value: pdbaa
    datatype: String
    enum: pdbaa
    enum: nr
    enum: sprot
  output parameter: parameter
    object type: HFormat-text
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,Clustalw
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,Clustalw:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: This implementation of clustalw is restricted to multiple alignment of protein sequences.
has service name text: Clustalw
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: Clustalw
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: sequences
    object type: FASTA
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: gapext
    has default value: 0.2
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: pairgap
    datatype: Integer
    enum: 1
    enum: 2
    enum: 3
    enum: 4
    enum: 5
    enum: 10
    enum: 25
    enum: 50
    enum: 100
    enum: 250
    enum: 500
  output parameter: parameter
    has parameter name text: Clustalout
    object type: clustal-aln-formatted-text
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,NetAsa
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,NetAsa:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: NetASA predicts the solvent accessibility of amino acid residues in a protein using a neural network algorithm.
has service name text: NetAsa
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: NetAsa
  performs task: operationTask
    type: ProteinStructureModeling
  input parameter: parameter
    object type: FASTA AA
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,Substitution
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,Substitution:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: This service allows to generate protein coordinates resulting from side chain subsitutions (backbone unaffected).
has service name text: Substitution
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: Substitution
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    has parameter name text: Structure
    object type: b64 encoded PDB
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter name text: Sequence
    object type: FASTA
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: Structure
    object type: b64 encoded PDB
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,echo
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,echo:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Simple Echo
has service name text: echo
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: echo
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: ASAlimit
    has default value: 0.25
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: rH2O
    has default value: 1.4
    datatype: Float
  output parameter: parameter
    object type: Object
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,Jnet
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,Jnet:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: A neural network protein secondary structure prediction method
has service name text: Jnet
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: Jnet
  performs task: operationTask
    type: ProteinStructureModeling
  input parameter: parameter
    object type: clustal-msf-formatted-text
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: log
    object type: text-formatted
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,CysPred
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,CysPred:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Given a protein sequence, this will run a predictor for the bonding state of its cysteines. It will return a prediction concerning all the cysteines at a while, given the observation that in most proteins, cysteines tend to have the same state (i.e. form or not disulfide bonds).
has service name text: CysPred
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: CysPred
  performs task: operationTask
    type: ProteinStructureModeling
  input parameter: parameter
    object type: FASTA AA
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: min
    has default value: 0.5
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: max
    has default value: 0.5
    datatype: Float
  output parameter: parameter
    has parameter name text: log
    object type: text-formatted
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,Mead Pot
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,Mead_Pot:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Mead-pot performs the calculation of the electrostatic potential for a protein by solving the Poisson-Boltzmann equation. It is a server adaptation of the potential program of the MEAD package (Macroscopic Electrostatics with Atomic Detail, D. Bashford). The present version assumes negative charges for GLU, ASP, Cter, and positive charges for ARG, LYS, Nter. Results are displayed on the molecular surface by a color code (red negative, blue positive). Warning: - This service is currently working only for proteins without ions or cofactors, (work in progress). - Work is also in progress to allow user specification of the charges per residue, or the focus on some region of interest).
has service name text: Mead_Pot
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: Mead_Pot
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    object type: b64 encoded PDB
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: epsout
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: epsin
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: title
    datatype: String
  output parameter: parameter
    object type: b64 Encoded PNG
    has parameter type: simpleParameter
  output parameter: parameter
    object type: b64 Encoded PNG
    has parameter type: simpleParameter
  output parameter: parameter
    object type: b64 Encoded PNG
    has parameter type: simpleParameter
  output parameter: parameter
    object type: b64 Encoded PNG
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,HCA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,HCA:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: HCA is a method to detect, from amino acid sequence, periodic occurrence of hydrophobic amino-acids compatible with regular secondary structures. This service will produce a bi-dimensional plot (postscript format), from which such periodicities can be analyzed.
has service name text: HCA
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: HCA
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    object type: AminoAcidSequence
    has parameter type: simpleParameter
  output parameter: parameter
    object type: b64 Encoded Postscript
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,PSea
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,PSea:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Protein secondary structure identification with P-SEA.
has service name text: PSea
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: PSea
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    object type: b64 encoded PDB
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: log
    object type: PSea-text-formatted
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,ASAfromPDBid
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,ASAfromPDBid:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Accessible Surface Area calculation
has service name text: ASAfromPDBid
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: ASAfromPDBid
  performs task: operationTask
    type: ProteinStructures
  input parameter: parameter
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: PDB
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: ASAlimit
    has default value: 0.25
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: rH2O
    has default value: 1.4
    datatype: Float
  output parameter: parameter
    has parameter name text: log
    object type: text-formatted
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: ClassVector
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: RelativeAccessVector
    object type: String
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,PredAcc
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,PredAcc:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: PredAcc is a program to predict the solvent accessibility of the amino-acids of a protein given its amino-acid sequence
has service name text: PredAcc
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: PredAcc
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: sequence
    object type: FASTA
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: threshold
    has default value: 25
    datatype: Integer
    enum: 0
    enum: 10
    enum: 15
    enum: 20
    enum: 25
    enum: 30
    enum: 35
    enum: 40
    enum: 45
    enum: 50
    enum: 55
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: gamma
    has default value: 10
    datatype: Integer
    enum: 5
    enum: 10
  output parameter: parameter
    has parameter name text: log
    object type: text-formatted
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: vector
    object type: String
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,Mead PKa
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,Mead_PKa:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Protein amino acid charge calculation as a function of the pH. Warning: this service is not fully functional (see help).
has service name text: Mead_PKa
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: Mead_PKa
  performs task: operationTask
    type: ProteinStructures

bioserv.rpbs.jussieu.fr,Automat
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,Automat:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: A tool to scan databanks of nucleic acid or amino acid sequences in order to retrieve sequences distantly related to the query.
has service name text: Automat
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: Automat
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: SEQ
    object type: FASTA
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: log
    object type: text-formatted
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,ExtractTurn
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,ExtractTurn:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsressource.py
has service description text: This service extracts all the beta-turns from a PDB file. It uses the program DSSP to extract helices and strands.
has service name text: ExtractTurn
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: ExtractTurn
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: structure
    object type: b64 encoded PDB
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: structure
    object type: text-formatted
    has parameter type: simpleParameter

bioserv.rpbs.jussieu.fr,Squizz
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:bioserv.rpbs.jussieu.fr,Squizz:2001-09-21T16-00-00Z
location URI: http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/wsRessource.py
has service description text: Squizz is a tool for sequence conversion or alignement conversion.
has service name text: Squizz
is alive: true
provided by: organisation
  authoritative: true
  publisher: bioserv.rpbs.jussieu.fr
has operation: operation
  has operation name text: Squizz
  performs task: operationTask
    type: Conversion
  input parameter: parameter
    object type: text-formatted
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: formatseq
    has default value: FASTA
    datatype: String
    enum: EMBL
    enum: FASTA
    enum: GCG
    enum: GDE
    enum: GENBANK
    enum: IG
    enum: NBRF
    enum: PIR
    enum: RAW
    enum: SWISSPROT
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: formataln
    has default value: CLUSTAL
    datatype: String
    enum: CLUSTAL
    enum: FASTA
    enum: MSF
    enum: NEXUS
    enum: PHYLIP
  output parameter: parameter
    object type: text-formatted
    has parameter type: simpleParameter

arabidopsis.info,getArabidopsisEcotypeByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByEMBL:2006-08-29T07-48-37Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC ecotypes for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input:X98772 .
has service name text: getArabidopsisEcotypeByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisEcotypeByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName

arabidopsis.info,getNASCstockNameBySeedType
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameBySeedType:2006-08-29T07-48-36Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given type of seed from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Single marker.
has service name text: getNASCstockNameBySeedType
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameBySeedType
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCseedType
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCseedType
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getArabidopsisEcotypeByNASCdonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByNASCdonorNumber:2006-08-29T07-48-39Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC ecotypes for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: salk_000013.
has service name text: getArabidopsisEcotypeByNASCdonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisEcotypeByNASCdonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName

arabidopsis.info,getArabidopsisLocusByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisLocusByEMBL:2006-08-29T07-48-15Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the locus for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Y15193.
has service name text: getArabidopsisLocusByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisLocusByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: Locus
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol

arabidopsis.info,getNASCArraysReferenceNumberByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysReferenceNumberByNASCstockCode:2006-08-29T08-58-14Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves the NASCArrays reference number for a given NASC stock code from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'NW20'.
has service name text: getNASCArraysReferenceNumberByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysReferenceNumberByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASCArraysReferenceNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getArabidopsisImageByAllele
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByAllele:2006-08-30T12-21-26Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis images for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer2-1, arc1-1.
has service name text: getArabidopsisImageByAllele
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByAllele
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele
  output parameter: parameter
    has parameter name text: NASC_image
    object type: b64 encoded gif
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisMutagenByNASCdonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByNASCdonorNumber:2006-08-29T07-48-45Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC mutagens for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: salk_000013.
has service name text: getArabidopsisMutagenByNASCdonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisMutagenByNASCdonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen

arabidopsis.info,getArabidopsisPublicationsByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisPublicationsByNASCstockCode:2006-08-29T07-48-00Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis publications for a given NASC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N500013'.
has service name text: getArabidopsisPublicationsByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisPublicationsByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: Publication
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisPublication

arabidopsis.info,getNASCArraysExpDescriptionByNASCArraysSlide
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByNASCArraysSlide:2006-08-27T13-24-22Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves NASCArrays experiment description for a given slide name, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Durrant_1-1_wild-type_Rep1_ATH1'.
has service name text: getNASCArraysExpDescriptionByNASCArraysSlide
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysExpDescriptionByNASCArraysSlide
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCArraysSlide
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysSlide
  output parameter: parameter
    has parameter name text: NASCexperimentDescription
    object type: text-plain
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getNASCstockNameByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByABRCcode:2006-08-29T07-48-25Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS20.
has service name text: getNASCstockNameByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ABRC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ABRC code
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getNASCphenotypeBySeedType
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeBySeedType:2006-08-29T07-49-09Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given NASC seed type from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: Single marker.
has service name text: getNASCphenotypeBySeedType
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeBySeedType
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCseedType
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCseedType
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCdonorNameByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByEMBL:2006-08-29T07-47-47Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the NASC donor name for a given EMBL accession number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'X98772'.
has service name text: getNASCdonorNameByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCdonorNameByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName

arabidopsis.info,getNASCphenotypeByMutagen
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByMutagen:2006-08-29T07-49-13Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given mutagen from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: NMB
has service name text: getNASCphenotypeByMutagen
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByMutagen
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockAvailabilityByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockAvailabilityByDonorNumber:2006-08-29T07-47-44Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the availability of a stock for a donor number given from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013'.
has service name text: getNASCstockAvailabilityByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockAvailabilityByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: Availability
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisAlleleByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByNASCstockName:2006-08-29T07-48-20Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the Arabidosis allele for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: apetala.
has service name text: getArabidopsisAlleleByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisAlleleByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele

arabidopsis.info,getNASCstockNameByKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByKeyword:2006-08-29T07-48-32Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given keyword from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: trichomes.
has service name text: getNASCstockNameByKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Global_Keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getNASCstockCodeByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByEMBL:2006-08-29T07-48-59Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Y15193.
has service name text: getNASCstockCodeByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisLocusByAllele
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisLocusByAllele:2006-08-29T07-48-14Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the locus for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: aux1-7.
has service name text: getArabidopsisLocusByAllele
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisLocusByAllele
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele
  output parameter: parameter
    has parameter name text: Locus
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol

arabidopsis.info,getNASCdonorNameByMutagen
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByMutagen:2006-08-29T07-48-23Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the NASC donor surname for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: EMS.
has service name text: getNASCdonorNameByMutagen
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCdonorNameByMutagen
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen
  output parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName

arabidopsis.info,getEMBLaccessionByInsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByInsertNumber:2006-08-29T07-48-07Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given Arabidopsis insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CSHL:ET84.
has service name text: getEMBLaccessionByInsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByInsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getArabidopsisEcotypeByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByNASCstockCode:2006-08-29T07-48-40Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC ecotypes for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: NW20.
has service name text: getArabidopsisEcotypeByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisEcotypeByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName

arabidopsis.info,getNASCArraysExpDescriptionByName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByName:2006-08-27T13-54-58Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves NASCArrays experiment description for a given experiment name, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Comparison of transcriptional profiles between sni1 and wild type'
has service name text: getNASCArraysExpDescriptionByName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysExpDescriptionByName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCArraysExperimentName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysExperimentName
  output parameter: parameter
    has parameter name text: NASCexperimentDescription
    object type: text-plain
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getNASCArraysSlideByExperimentName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysSlideByExperimentName:2006-08-30T08-56-31Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves slide names for a given experiment name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'FRI FLC combos'.
has service name text: getNASCArraysSlideByExperimentName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysSlideByExperimentName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCArraysExperimentName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysExperimentName
  output parameter: parameter
    has parameter name text: NASCArraysSlide
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysSlide

arabidopsis.info,getArabidopsisImageByNASCdonorName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCdonorName:2006-08-30T12-21-23Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis images for a given NASC donor namefrom the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'Kevin Pyke'.
has service name text: getArabidopsisImageByNASCdonorName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByNASCdonorName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName
  output parameter: parameter
    has parameter name text: NASC_image
    object type: b64 encoded gif
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getEMBLaccessionByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByNASCstockName:2006-08-29T07-48-13Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: AT_111.
has service name text: getEMBLaccessionByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getNASCArraysReferenceNumberByExperimentName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysReferenceNumberByExperimentName:2006-08-27T16-05-35Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves the NASCArrays reference number for a given NASCArrays experiment name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Baseline experiment floral homeotics'.
has service name text: getNASCArraysReferenceNumberByExperimentName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysReferenceNumberByExperimentName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCArraysExperimentName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysExperimentName
  output parameter: parameter
    has parameter name text: NASCArraysReferenceNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getNASCphenotypeByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByDonorNumber:2006-08-29T07-49-17Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given a donor number (http://arabidopsis.info). Example input: salk_000013
has service name text: getNASCphenotypeByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisGrowthRequirementsByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisGrowthRequirementsByNASCstockName:2006-08-29T07-47-29Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the growth requirements for a given NASC stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'eceriferum', 'Landsberg erecta'.
has service name text: getArabidopsisGrowthRequirementsByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisGrowthRequirementsByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: GrowthRequirements
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY-S/ServiceInstances#arabidopsis.info,NASCArraysGeneswingerByATH1AffymetrixProbeSetID
type: serviceDescription
format: moby
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Runs the analysis tool, GeneSwinger for a given Affymetrix probeset ID from the ATH1 chip. (http://affy.arabidopsis.info). Example input: 252056_at.
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AffymetrixProbeSetID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AffymetrixProbeSetID
  output parameter: parameter
    has parameter name text: NASCArraysGeneSwinger
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getNASCinsertByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByDonorNumber:2006-08-29T07-48-49Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC insert numbers for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: salk_000013.
has service name text: getNASCinsertByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCinsertByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: InsertNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number

arabidopsis.info,getArabidopsisImageByNASCdonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCdonorNumber:2006-08-30T12-21-25Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis images for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: DP23, L4, 304.
has service name text: getArabidopsisImageByNASCdonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByNASCdonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: NASC_image
    object type: b64 encoded gif
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockCodeByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByABRCcode:2006-08-29T07-49-05Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS20".
has service name text: getNASCstockCodeByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ABRC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ABRC code
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockNameByMutagen
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByMutagen:2006-08-29T07-48-34Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: NMB.
has service name text: getNASCstockNameByMutagen
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByMutagen
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getArabidopsisEcotypeByInsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByInsertNumber:2006-08-29T07-48-38Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC ecotypes for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 083008.
has service name text: getArabidopsisEcotypeByInsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisEcotypeByInsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName

arabidopsis.info,getNASCstockAvailabilityByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockAvailabilityByNASCstockCode:2006-08-29T07-47-44Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the availability of a stock for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N20', 'N901', 'N960', 'N1150'.
has service name text: getNASCstockAvailabilityByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockAvailabilityByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: Availability
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockCodeByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByAGI:2006-08-29T07-47-54Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC_codes for a given AGI locus code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: At1g20310.
has service name text: getNASCstockCodeByAGI
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByAGI
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AGI_LocusCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCdonorNameByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByABRCcode:2006-08-29T07-47-50Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the NASC donor name(s) for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'CS20', 'CS70', 'CS7'.
has service name text: getNASCdonorNameByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCdonorNameByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ABRC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ABRC code
  output parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName

arabidopsis.info,getNASCstockNameByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByAGI:2006-08-29T07-47-40Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given AGI locus code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'At1g19100'.
has service name text: getNASCstockNameByAGI
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByAGI
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AGI_LocusCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getNASCstockNameByDonorName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByDonorName:2006-08-29T07-48-27Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given donor surname from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Relichova.
has service name text: getNASCstockNameByDonorName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByDonorName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getArabidopsisPublicationsByNASCdonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisPublicationsByNASCdonorNumber:2006-08-29T07-47-59Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis publications for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013'.
has service name text: getArabidopsisPublicationsByNASCdonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisPublicationsByNASCdonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: Publication
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisPublication

arabidopsis.info,getNASCArraysSlideByReferenceNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysSlideByReferenceNumber:2006-08-29T15-19-22Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves slide names for a given reference number from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'NASCARRAYS-389'.
has service name text: getNASCArraysSlideByReferenceNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysSlideByReferenceNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCArraysReferenceNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber
  output parameter: parameter
    has parameter name text: NASCArraysSlide
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysSlide

arabidopsis.info,getNASCstockCodeByLocus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByLocus:2006-08-29T07-49-02Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given locus in Arabidopsis from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer5.
has service name text: getNASCstockCodeByLocus
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByLocus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ArabidopsisGeneSymbol
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCinsertByLocus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByLocus:2006-08-29T07-48-51Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC insert numbers for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: At4g22165.
has service name text: getNASCinsertByLocus
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCinsertByLocus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ArabidopsisGeneSymbol
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol
  output parameter: parameter
    has parameter name text: InsertNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number

arabidopsis.info,getNASCdonorNameByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByDonorNumber:2006-08-29T07-47-51Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves donor surname for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000014'.
has service name text: getNASCdonorNameByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCdonorNameByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName

arabidopsis.info,getNASCdonorNameByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByNASCstockCode:2006-08-29T07-47-49Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the NASC donor name for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N4', 'N933', 'N3074', 'N1150'.
has service name text: getNASCdonorNameByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCdonorNameByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName

arabidopsis.info,getEMBLaccessionByAllele
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByAllele:2006-08-29T07-48-04Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer5-1.
has service name text: getEMBLaccessionByAllele
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByAllele
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCallel
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getArabidopsisAlleleByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByABRCcode:2006-08-29T07-48-21Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the Arabidosis allele for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS20.
has service name text: getArabidopsisAlleleByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisAlleleByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ABRC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ABRC code
  output parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele

arabidopsis.info,getArabidopsisLocusByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisLocusByNASCstockCode:2006-08-29T07-48-16Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the locus for a given a stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N6, N4, N3074.
has service name text: getArabidopsisLocusByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisLocusByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: Locus
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol

arabidopsis.info,getNASCstockCodeByDonorName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByDonorName:2006-08-29T07-48-56Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given donor surname from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Plieth.
has service name text: getNASCstockCodeByDonorName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByDonorName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisMutagenByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByNASCstockCode:2006-08-29T07-48-46Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC mutagens for a given NASC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N3074.
has service name text: getArabidopsisMutagenByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisMutagenByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen

arabidopsis.info,getNASCstockDescriptionByStockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockDescriptionByStockName:2006-08-29T07-47-39Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the description of a stock for a given name of a stock from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'albina', 'ZWILLE'.
has service name text: getNASCstockDescriptionByStockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockDescriptionByStockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: StockDescription
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCphenotypeByLocus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByLocus:2006-08-29T07-49-08Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given Arabidopsis gene symbol from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: cer2
has service name text: getNASCphenotypeByLocus
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByLocus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ArabidopsisGeneSymbol
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCphenotypeByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByABRCcode:2006-08-29T07-49-06Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given ABRC code from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: CS20.
has service name text: getNASCphenotypeByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ABRC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ABRC code
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisGrowthRequirementsByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisGrowthRequirementsByNASCstockCode:2006-08-29T07-47-34Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the growth requirements for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N6', 'N933', 'N20'.
has service name text: getArabidopsisGrowthRequirementsByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisGrowthRequirementsByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: GrowthRequirements
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getEMBLaccessionByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByDonorNumber:2006-08-29T07-48-06Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'fah1-7 ttg'.
has service name text: getEMBLaccessionByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getNASCphenotypeByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByNASCstockCode:2006-08-30T13-30-58Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given NASC stock Code from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: NW20
has service name text: getNASCphenotypeByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisMutagenByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByNASCstockName:2006-08-29T07-48-47Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC mutagens for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: apetala.
has service name text: getArabidopsisMutagenByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisMutagenByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen

arabidopsis.info,getNASCArraysExpDescriptionByMGEDExperimentDesignType
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByMGEDExperimentDesignType:2006-08-25T13-41-37Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves NASCArrays experiment description for a given MGED experiment design type from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: time_series_design.
has service name text: getNASCArraysExpDescriptionByMGEDExperimentDesignType
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysExpDescriptionByMGEDExperimentDesignType
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: MGEDExperimentDesignType
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: MGEDExperimentDesignType
  output parameter: parameter
    has parameter name text: NASCexperimentDescription
    object type: text-plain
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getArabidopsisGrowthRequirementsByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisGrowthRequirementsByABRCcode:2006-08-29T07-47-35Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the growth requirements for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'CS20', 'CS3', 'CS90'.
has service name text: getArabidopsisGrowthRequirementsByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisGrowthRequirementsByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ABRC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ABRC code
  output parameter: parameter
    has parameter name text: GrowthRequirements
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCinsertByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByABRCcode:2006-08-29T07-48-48Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC insert numbers for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS25583.
has service name text: getNASCinsertByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCinsertByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: InsertNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY-S/ServiceInstances#arabidopsis.info,getMAS5normalisedDataByNASCArraysSlide
type: serviceDescription
format: moby
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves the expression values for a given Affymetrix ProbeSet ID by Slide name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Durrant_1-1_wild-type_Rep1_ATH1'.
has service name text: getMAS5normalisedDataByNASCArraysSlide
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getMAS5normalisedDataByNASCArraysSlide
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCArraysSlide
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysSlide
  output parameter: parameter
    has parameter name text: ExpressionData
    object type: MicroArrayData Text
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysSlide

arabidopsis.info,getNASCstockNameByEcotypeName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByEcotypeName:2006-08-29T07-48-29Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given ecotype name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: S96.
has service name text: getNASCstockNameByEcotypeName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByEcotypeName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getArabidopsisHabitatByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisHabitatByNASCstockCode:2006-08-29T07-47-37Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the habitat in which Arabidopsis grows for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N900', 'N901', 'N902', 'N960', 'N1150'.
has service name text: getArabidopsisHabitatByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisHabitatByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: ArabidopsisHabitat
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCinsertByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByNASCstockName:2006-08-29T07-48-53Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC insert numbers for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: AT_111.
has service name text: getNASCinsertByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCinsertByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: InsertNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number

arabidopsis.info,getArabidopsisImageByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCstockCode:2006-08-30T12-21-21Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the images for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: NW77.
has service name text: getArabidopsisImageByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASC_image
    object type: b64 encoded gif
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCphenotypeByEcotypeName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByEcotypeName:2006-08-29T07-47-52Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the givenecotype name from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: 'Ag-0'.
has service name text: getNASCphenotypeByEcotypeName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByEcotypeName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCinsertByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByNASCstockCode:2006-08-29T07-48-52Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC insert numbers for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N700001.
has service name text: getNASCinsertByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCinsertByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: InsertNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number

arabidopsis.info,getEMBLaccessionByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByNASCstockCode:2006-08-29T07-48-12Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N3574.
has service name text: getEMBLaccessionByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getNASCphenotypeByKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByKeyword:2006-08-29T07-49-07Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given keyword from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: David Meinke
has service name text: getNASCphenotypeByKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Global_Keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockNameByLocus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByLocus:2006-08-29T07-48-33Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: psv.
has service name text: getNASCstockNameByLocus
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByLocus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ArabidopsisGeneSymbol
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getNASCstockCodeByStockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByStockName:2006-08-29T07-49-04Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: An-1".
has service name text: getNASCstockCodeByStockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByStockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCinsertByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByAGI:2006-08-29T07-47-46Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC inserts for a given AGI locus code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: At1g11900.
has service name text: getNASCinsertByAGI
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCinsertByAGI
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AGI_LocusCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number

arabidopsis.info,getArabidopsisSeedTypeByNASCdonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisSeedTypeByNASCdonorNumber:2006-08-29T07-47-58Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis seed type for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013'.
has service name text: getArabidopsisSeedTypeByNASCdonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisSeedTypeByNASCdonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: SeedType
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCseedType

arabidopsis.info,getNASCstockCodeByKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByKeyword:2006-08-29T07-49-01Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given Keyword from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: dwarf.
has service name text: getNASCstockCodeByKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Global_Keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockDescriptionByStockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockDescriptionByStockCode:2006-08-29T07-47-38Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the description of a stock for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N500013', 'N3074'.
has service name text: getNASCstockDescriptionByStockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockDescriptionByStockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockcode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: StockDescription
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockAvailabilityByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockAvailabilityByNASCstockName:2006-08-29T07-47-45Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the availability of a stock for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'angustifolia', 'chlorina', 'brevipedicellus', 'agamous'.
has service name text: getNASCstockAvailabilityByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockAvailabilityByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: Availability
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisMutagenByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByEMBL:2006-08-29T07-48-42Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC mutagens for a given from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: X98772.
has service name text: getArabidopsisMutagenByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisMutagenByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen

arabidopsis.info,getArabidopsisImageByNASCinsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCinsertNumber:2006-08-20T09-16-42Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis images for a given Insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'CSHL:ET14'.
has service name text: getArabidopsisImageByNASCinsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByNASCinsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: NASC_image
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisImageByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByABRCcode:2006-08-30T12-21-17Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis images for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS30.
has service name text: getArabidopsisImageByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ABRC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ABRC code
  output parameter: parameter
    has parameter name text: NASC_image
    object type: b64 encoded gif
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockCodeByEcotypeName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByEcotypeName:2006-08-29T07-48-58Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given ecotype name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Ag-0.
has service name text: getNASCstockCodeByEcotypeName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByEcotypeName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockDescriptionByNASCinsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockDescriptionByNASCinsertNumber:2006-08-29T07-47-42Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the description of a stock for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: '083008'.
has service name text: getNASCstockDescriptionByNASCinsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockDescriptionByNASCinsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: StockDescription
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisAlleleByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByEMBL:2006-08-29T07-48-22Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the Arabidosis allele for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: X98772.
has service name text: getArabidopsisAlleleByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisAlleleByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele

arabidopsis.info,getNASCstockCodeByCollection
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByCollection:2006-08-29T07-48-55Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given collection name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CAUT.
has service name text: getNASCstockCodeByCollection
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByCollection
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCcollection
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCcollection
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisSeedTypeByNASCinsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisSeedTypeByNASCinsertNumber:2006-08-29T07-47-56Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis seed type for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: launchpad:1A.
has service name text: getArabidopsisSeedTypeByNASCinsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisSeedTypeByNASCinsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: SeedType
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCseedType

arabidopsis.info,getArabidopsisEcotypeByMutagen
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByMutagen:2006-08-29T07-48-39Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC ecotypes for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input:EMS .
has service name text: getArabidopsisEcotypeByMutagen
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisEcotypeByMutagen
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen
  output parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName

arabidopsis.info,getArabidopsisPublicationsByNASCinsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisPublicationsByNASCinsertNumber:2006-08-29T07-48-01Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis publications for a given Arabidopsis insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: '083008'.
has service name text: getArabidopsisPublicationsByNASCinsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisPublicationsByNASCinsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: Publication
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisPublication

arabidopsis.info,getArabidopsisMutagenByInsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByInsertNumber:2006-08-29T07-48-43Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC mutagens for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 083008.
has service name text: getArabidopsisMutagenByInsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisMutagenByInsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen

arabidopsis.info,getNASCstockCodeByAllele
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByAllele:2006-08-29T07-48-54Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer5-1.
has service name text: getNASCstockCodeByAllele
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByAllele
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,NASCArraysGeneswingerByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,NASCArraysGeneswingerByAGI:2006-08-29T09-06-49Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Runs the analysis tool, GeneSwinger for a given AGI locus code. (http://affy.arabidopsis.info). Example input: At3g52590.
has service name text: NASCArraysGeneswingerByAGI
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: NASCArraysGeneswingerByAGI
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AGI_LocusCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: NASCArraysGeneSwinger
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getArabidopsisSeedTypeByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisSeedTypeByNASCstockCode:2006-08-29T07-47-57Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis seed type for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N3074.
has service name text: getArabidopsisSeedTypeByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisSeedTypeByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: SeedType
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCseedType

arabidopsis.info,getEMBLaccessionByMutagen
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByMutagen:2006-08-29T07-48-10Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: gamma rays.
has service name text: getEMBLaccessionByMutagen
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByMutagen
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getEMBLaccessionByABRCcode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByABRCcode:2006-08-29T07-48-03Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS20.
has service name text: getEMBLaccessionByABRCcode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByABRCcode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ABRC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ABRC code
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getNASCdonorNameByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByNASCstockName:2006-08-29T07-47-48Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the NASC donor name for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'An-1', 'AT_3462', 'chlorina', 'AT_111'.
has service name text: getNASCdonorNameByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCdonorNameByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName

arabidopsis.info,getNASCArraysReferenceNumberBySlideName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysReferenceNumberBySlideName:2006-08-27T16-05-37Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves NASCArrays reference number for a given slide name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Penfield_1-1_endosperm-control_Rep1_ATH1'.
has service name text: getNASCArraysReferenceNumberBySlideName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysReferenceNumberBySlideName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCArraysSlide
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysSlide
  output parameter: parameter
    has parameter name text: NASCArraysReferenceNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getEMBLaccessionByKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByKeyword:2006-08-29T07-48-08Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given keyword from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: trichomes.
has service name text: getEMBLaccessionByKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Global_Keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getArabidopsisImageByNASCecotypeName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCecotypeName:2006-08-30T12-21-15Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis images for a given from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Ag-0, Bla-10, Br-0, Fe-1.
has service name text: getArabidopsisImageByNASCecotypeName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByNASCecotypeName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCecotypeName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCecotypeName
  output parameter: parameter
    has parameter name text: NASC_image
    object type: b64 encoded gif
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockNameByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByDonorNumber:2006-08-29T07-48-28Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: salk_000014.
has service name text: getNASCstockNameByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getNASCstockNameByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByNASCstockCode:2006-08-29T07-48-35Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N4, N6, N1654, N933.
has service name text: getNASCstockNameByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getNASCphenotypeByAllele
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByAllele:2006-08-29T07-49-11Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given allele from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: cer5-1
has service name text: getNASCphenotypeByAllele
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByAllele
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockNameByInsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByInsertNumber:2006-08-29T07-48-31Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 083008.
has service name text: getNASCstockNameByInsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByInsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getNASCcollectionByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCcollectionByDonorNumber:2006-08-29T07-47-41Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of the collection from which the given NASC donor number belongs to from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013\.
has service name text: getNASCcollectionByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCcollectionByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: NASCcollection
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCcollection

arabidopsis.info,getNASCArraysSlideByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysSlideByNASCstockCode:2006-08-29T15-17-24Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves slide names for a given NASC stock ocde from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: N1093.
has service name text: getNASCArraysSlideByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysSlideByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASCArraysSlide
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysSlide

arabidopsis.info,getNASCphenotypeByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByEMBL:2006-08-29T07-49-16Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given EMBL accession (http://arabidopsis.info). Example input: X98772
has service name text: getNASCphenotypeByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCphenotypeByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByNASCstockName:2006-08-29T07-49-10Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given NASC stock name from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input:An-1.
has service name text: getNASCphenotypeByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisAlleleByLocus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByLocus:2006-08-29T07-48-18Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the Arabidosis allele for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer2.
has service name text: getArabidopsisAlleleByLocus
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisAlleleByLocus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ArabidopsisGeneSymbol
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol
  output parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele

arabidopsis.info,getNASCstockDescriptionByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockDescriptionByDonorNumber:2006-08-29T07-47-41Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the description of a stock for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013'.
has service name text: getNASCstockDescriptionByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockDescriptionByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: StockDescription
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisMutagenByAllele
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByAllele:2006-08-29T07-48-41Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC mutagens for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer5-1.
has service name text: getArabidopsisMutagenByAllele
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisMutagenByAllele
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ArabidopsisGeneSymbol
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol
  output parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen

arabidopsis.info,getArabidopsisImageByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByAGI:2006-06-22T14-27-22Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves an Arabidopsis Image for a given AGI Locus Code from NASCs Germplasm database (http://arabidopsis.info). Examples include: At4g24510 and At2g26670
has service name text: getArabidopsisImageByAGI
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByAGI
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: input_name
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: NASC_image
    object type: SimpleAnnotatedGIFImage
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisPublicationsByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisPublicationsByNASCstockName:2006-08-29T07-48-02Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis publications for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013 (O)'.
has service name text: getArabidopsisPublicationsByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisPublicationsByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: Publication
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisPublication

arabidopsis.info,getArabidopsisHabitatByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisHabitatByNASCstockName:2006-08-29T07-47-36Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the habitat in which Arabidopsis grows for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'An-1'.
has service name text: getArabidopsisHabitatByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisHabitatByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: ArabidopsisHabitat
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCdonorNameByInsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByInsertNumber:2006-08-29T07-48-24Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the NASC donor surname for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CSHL:ET84.
has service name text: getNASCdonorNameByInsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCdonorNameByInsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName

arabidopsis.info,getNASCstockNameByAllele
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByAllele:2006-08-29T07-48-26Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Cer-1.
has service name text: getNASCstockNameByAllele
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByAllele
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getEMBLaccessionByLocus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByLocus:2006-08-29T07-48-09Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer2.
has service name text: getEMBLaccessionByLocus
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByLocus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ArabidopsisGeneSymbol
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getArabidopsisAlleleByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByNASCstockCode:2006-08-29T07-48-19Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the Arabidosis allele for a given NASC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N6.
has service name text: getArabidopsisAlleleByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisAlleleByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASCallele
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCallele

arabidopsis.info,getNASCstockCodeByInsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByInsertNumber:2006-08-29T07-49-00Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock codes for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 083008.
has service name text: getNASCstockCodeByInsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByInsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASC codebyAGI locus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASC_codebyAGI_locus:2006-08-30T13-30-59Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC_codes for a given AGI locus code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: At1g20310.
has service name text: getNASC_codebyAGI_locus
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASC_codebyAGI_locus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AGI_LocusCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getEMBLaccessionByNASCseedType
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByNASCseedType:2006-08-29T07-48-11Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given seed type from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'Single marker'.
has service name text: getEMBLaccessionByNASCseedType
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByNASCseedType
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCseedType
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCseedType
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getArabidopsisImageByKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByKeyword:2006-08-30T12-21-14Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis images for a given keyword from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'asymmetric', 'epicuticular wax layer'.
has service name text: getArabidopsisImageByKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: Global_Keyword
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: Global Keyword
  output parameter: parameter
    has parameter name text: NASC_image
    object type: b64 encoded gif
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockCodeByDonorNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByDonorNumber:2006-08-29T07-48-57Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the NASC Stock code for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 304.
has service name text: getNASCstockCodeByDonorNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByDonorNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorNumber
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockNameByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByEMBL:2006-08-29T07-48-30Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the name of a stock for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Y15193.
has service name text: getNASCstockNameByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockNameByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName

arabidopsis.info,getNASCphenotypeByDonorName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByDonorName:2006-08-29T07-49-12Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given donor surname from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: Hobbie
has service name text: getNASCphenotypeByDonorName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByDonorName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getEMBLaccessionByDonorName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByDonorName:2006-08-29T07-48-05Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the EMBL accession number for a given donor surname from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Hobbie.
has service name text: getEMBLaccessionByDonorName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getEMBLaccessionByDonorName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCdonorName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCdonorName
  output parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL

arabidopsis.info,getArabidopsisMutagenByLocus
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByLocus:2006-08-29T07-48-44Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC mutagens for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer2.
has service name text: getArabidopsisMutagenByLocus
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisMutagenByLocus
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ArabidopsisGeneSymbol
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol
  output parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen

arabidopsis.info,getNASCArraysExpDescriptionByReferenceNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByReferenceNumber:2006-08-25T11-45-33Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves NASCArrays experiment description for a given from NASCArrays reference number from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: NASCARRAYS-136.
has service name text: getNASCArraysExpDescriptionByReferenceNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysExpDescriptionByReferenceNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCArraysReferenceNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber
  output parameter: parameter
    has parameter name text: NASCexperimentDescription
    object type: text-plain
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getNASCphenotypeByAGI
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByAGI:2006-08-29T07-47-53Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given AGI locus code from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: At1g20300
has service name text: getNASCphenotypeByAGI
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByAGI
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AGI_LocusCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCinsertByEMBL
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByEMBL:2006-08-29T07-48-50Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC insert numbers for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: AB028622.
has service name text: getNASCinsertByEMBL
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCinsertByEMBL
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: EMBL
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: EMBL
  output parameter: parameter
    has parameter name text: InsertNumber
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number

arabidopsis.info,getNASCphenotypeByInsertNumber
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByInsertNumber:2006-08-29T07-49-15Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis phenotypes corresponding to the given insert number from NASCs Germplasm database (http://arabidopsis.info). Example input: 083008
has service name text: getNASCphenotypeByInsertNumber
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCphenotypeByInsertNumber
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: ATH_Insert_number
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ATH Insert number
  output parameter: parameter
    has parameter name text: Phenotype
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getArabidopsisImageByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCstockName:2006-08-30T12-21-19Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis images for a given NASC stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: brevipedicellus, Angustifolia, Dentata.
has service name text: getArabidopsisImageByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisImageByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: NASC_image
    object type: b64 encoded gif
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCstockCodeByMutagen
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByMutagen:2006-08-29T07-49-03Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves NASC Stock code for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: NMB".
has service name text: getNASCstockCodeByMutagen
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCstockCodeByMutagen
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCmutagen
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCmutagen
  output parameter: parameter
    has parameter name text: StockCode
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code

arabidopsis.info,getNASCArraysExpDescriptionByNASCstockCode
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByNASCstockCode:2006-08-27T14-24-22Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Retrieves NASCArrays experiment description for a given NASC stock code, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'N1093', 'NW20'
has service name text: getNASCArraysExpDescriptionByNASCstockCode
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getNASCArraysExpDescriptionByNASCstockCode
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASC_code
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASC code
  output parameter: parameter
    has parameter name text: NASCexperimentDescription
    object type: text-plain
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getArabidopsisSeedTypeByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisSeedTypeByNASCstockName:2006-08-29T07-47-55Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves Arabidopsis seed type for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'root hair defective'.
has service name text: getArabidopsisSeedTypeByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisSeedTypeByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: SeedType
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCseedType

arabidopsis.info,NASCArraysGeneswingerByAGAffymetrixProbeSetID
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,NASCArraysGeneswingerByAGAffymetrixProbeSetID:2006-08-29T11-15-48Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi
has service description text: Runs the analysis tool, GeneSwinger for a given Affymetrix probeset ID from the AG chip. (http://affy.arabidopsis.info). Example input: 13129_f_at.
has service name text: NASCArraysGeneswingerByAGAffymetrixProbeSetID
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: NASCArraysGeneswingerByAGAffymetrixProbeSetID
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: AffymetrixProbeSetID
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AffymetrixProbeSetID
  output parameter: parameter
    has parameter name text: NASCArraysGeneSwinger
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCArraysReferenceNumber

arabidopsis.info,getArabidopsisLocusByNASCstockName
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisLocusByNASCstockName:2006-08-29T07-48-17Z
location URI: http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi
has service description text: Retrieves the locus for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: apetala.
has service name text: getArabidopsisLocusByNASCstockName
is alive: true
provided by: organisation
  authoritative: false
  publisher: arabidopsis.info
has operation: operation
  has operation name text: getArabidopsisLocusByNASCstockName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: NASCstockName
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: NASCstockName
  output parameter: parameter
    has parameter name text: Locus
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: ArabidopsisGeneSymbol

arexdb.org,getGOCollection
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arexdb.org,getGOCollection:2006-04-27T19-36-29Z
location URI: http://mobycentral.icapture.ubc.ca/cgi-bin/Services/Services.cgi
has service description text: Consumes a collection of GO ids and returns a collection of AGI LocusCodes
has service name text: getGOCollection
is alive: true
provided by: organisation
  authoritative: true
  publisher: arexdb.org
has operation: operation
  has operation name text: getGOCollection
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: go_ids
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: GO
  output parameter: parameter
    has parameter name text: myOutputArticleName
    has parameter type: collectionParameter
    object type: Object
    in namespaces: parameterNamespace
      type: AGI LocusCode

arexdb.org,getAREXGFPImage
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:arexdb.org,getAREXGFPImage:2006-07-07T00-03-30Z
location URI: http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/ArawsServices.cgi
has service description text: Consumes an AGI Locus code and retrieves an image of the GFP expression pattern or heatmap for that locus from AREX DB.
has service name text: getAREXGFPImage
is alive: true
provided by: organisation
  authoritative: true
  publisher: arexdb.org
has operation: operation
  has operation name text: getAREXGFPImage
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: incomingAGI
    object type: Object
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode
  output parameter: parameter
    has parameter name text: outImage
    object type: SimpleAnnotatedJPEGImage
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: AGI LocusCode

sapporo.genomics.purdue.edu,GetString
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:sapporo.genomics.purdue.edu,GetString:2001-09-21T16-00-00Z
location URI: http://sapporo.genomics.purdue.edu/cgi-bin/cgiwrap/bgulden/cgi-bin/serviceTest.pl
has service description text: Spits back the inputted string
has service name text: GetString
is alive: true
provided by: organisation
  authoritative: true
  publisher: sapporo.genomics.purdue.edu
has operation: operation
  has operation name text: GetString
  performs task: operationTask
    type: urn:lsid:biomoby.org:servicetype:MyTestingServiceType 1110380726987:2001-09-21T16-00-00Z
  input parameter: parameter
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    object type: String
    has parameter type: simpleParameter

sapporo.genomics.purdue.edu,PlantspBlast
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:sapporo.genomics.purdue.edu,PlantspBlast:2001-09-21T16-00-00Z
location URI: http://sapporo.genomics.purdue.edu/cgi-bin/cgiwrap/bgulden/cgi-bin/serviceTest.pl
has service description text: This service is currently under development, it is as of now, unreliable at best
has service name text: PlantspBlast
is alive: true
provided by: organisation
  authoritative: true
  publisher: sapporo.genomics.purdue.edu
has operation: operation
  has operation name text: PlantspBlast
  performs task: operationTask
    type: NCBI Blast
  input parameter: parameter
    has parameter name text: Fasta_sequence
    object type: String
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: PROGRAM
    datatype: String
    enum: blastp
    enum: blastn
    enum: blastx
    enum: tblastn
    enum: tblastx
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: FILTER
    datatype: String
    enum: true
    enum: false
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: EXPECT
    datatype: Float
    enum: true
    enum: false
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: DESCRIPTIONS
    datatype: Float
    enum: true
    enum: false
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: ALIGNMENTS
    datatype: Float
    enum: true
    enum: false
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: DB
    has default value: all_prots
    datatype: String
    enum: pp_active_prots
    enum: pt_active_prots
    enum: pu_active_prots
    enum: all_prots
    enum: viridiplantae_prots
    enum: tigr_osa2_prots
    enum: tigr_osa3_prots
    enum: tigr_osa2kinases
    enum: tigr_ath_prots.1
    enum: tigr_ath_prots.2
    enum: tigr_ath_prots.5
    enum: ubqE1
    enum: mips1
    enum: mips_update
    enum: pp_active_nuc
    enum: pt_active_nuc
    enum: pu_active_nuc
    enum: all_nucs
    enum: tigr_osa2cds
    enum: tigr_osa2con
    enum: osa2kinase_dna
    enum: osa_indica
    enum: tigr_ath_genes
    enum: tigr_ath_con.1
    enum: tigr_ath_con.2
  output parameter: parameter
    has parameter name text: BlastResults
    has parameter type: collectionParameter
    object type: String

sapporo.genomics.purdue.edu,LexiSearch
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:sapporo.genomics.purdue.edu,LexiSearch:2001-09-21T16-00-00Z
location URI: http://sapporo.genomics.purdue.edu/cgi-bin/cgiwrap/bgulden/cgi-bin/serviceTest.pl
has service description text: This service takes in a String object where the value of the string is the search word and returns a collection of strings of the searched lexicon database
has service name text: LexiSearch
is alive: true
provided by: organisation
  authoritative: true
  publisher: sapporo.genomics.purdue.edu
has operation: operation
  has operation name text: LexiSearch
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: results
    has parameter type: collectionParameter
    object type: String

coe01.ucalgary.ca,ConvertAAtoFASTA AA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:coe01.ucalgary.ca,ConvertAAtoFASTA_AA:2006-11-21T10-39-17Z
location URI: http://coe01.ucalgary.ca:8089/ConvertAAtoFASTA_AA
has service description text: Converts amino acid objects into FastA formatted records, primarily to increase inter-service compatibility
has service name text: ConvertAAtoFASTA_AA
is alive: true
provided by: organisation
  authoritative: false
  publisher: coe01.ucalgary.ca
has operation: operation
  has operation name text: ConvertAAtoFASTA_AA
  performs task: operationTask
    type: FormatConversion
  input parameter: parameter
    has parameter name text: inseq
    object type: AminoAcidSequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: outseq
    object type: FASTA AA
    has parameter type: simpleParameter

coe01.ucalgary.ca,run CBRBLAST
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:coe01.ucalgary.ca,run_CBRBLAST:2006-04-25T13-39-23Z
location URI: http://www.moby.ucalgary.ca/cgi-bin/MobyEd_dispatcher.cgi
has service description text: BLAST hardware search service: formats alignment result in NCBI_BLAST_Text format
has service name text: run_CBRBLAST
is alive: true
provided by: organisation
  authoritative: true
  publisher: coe01.ucalgary.ca
has operation: operation
  has operation name text: run_CBRBLAST
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: seq
    object type: DNASequence
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: blast
    object type: NCBI BLAST Text
    has parameter type: simpleParameter

www.rri.sari.ac.uk,TestExtractFetcher
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:www.rri.sari.ac.uk,TestExtractFetcher:2006-08-04T12-16-01Z
location URI: http://nbx1.rri.sari.ac.uk/axis/services/TestExtractFetcher
has service description text: This service retrieves extracts from a BASE2 database
has service name text: TestExtractFetcher
is alive: true
provided by: organisation
  authoritative: true
  publisher: www.rri.sari.ac.uk
has operation: operation
  has operation name text: TestExtractFetcher
  performs task: operationTask
    type: Service
  input parameter: parameter
    has parameter name text: ExtractName
    object type: String
    has parameter type: simpleParameter
    in namespaces: parameterNamespace
      type: base2
  output parameter: parameter
    has parameter name text: Extracts
    has parameter type: collectionParameter
    object type: ExtractData

icapture.mrl.ubc.ca,ObjectUnion
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:icapture.mrl.ubc.ca,ObjectUnion:2006-04-24T17-38-01Z
location URI: http://mobycentral.icapture.ubc.ca/cgi-bin/Services/Services.cgi
has service description text: takes two collections of input objects and returns a collection of output objects representing the non-redundant union of those two collections. Objects are determined to be similar or dissimilar based on their namespace/id pairs, regardless of Object Class; in cases where two identical objects have different Class instantiations, the Class of the object in Collection1 is preferred
has service name text: ObjectUnion
is alive: true
provided by: organisation
  authoritative: true
  publisher: icapture.mrl.ubc.ca
has operation: operation
  has operation name text: ObjectUnion
  performs task: operationTask
    type: SetUnion
  input parameter: parameter
    has parameter name text: collection2
    has parameter type: collectionParameter
    object type: Object
  input parameter: parameter
    has parameter name text: collection1
    has parameter type: collectionParameter
    object type: Object
  output parameter: parameter
    has parameter name text: UnionCollection
    has parameter type: collectionParameter
    object type: Object

icapture.mrl.ubc.ca,ObjectIntersection
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:icapture.mrl.ubc.ca,ObjectIntersection:2006-04-24T17-37-36Z
location URI: http://mobycentral.icapture.ubc.ca/cgi-bin/Services/Services.cgi
has service description text: takes two collections of input objects and returns a collection of output objects representing the non-redundant intersection of those two collections. Objects are determined to be similar or dissimilar based on their namespace/id pairs, regardless of Object Class; in cases where two identical objects have different Class instantiations, the Class of the object in Collection1 is preferred
has service name text: ObjectIntersection
is alive: true
provided by: organisation
  authoritative: true
  publisher: icapture.mrl.ubc.ca
has operation: operation
  has operation name text: ObjectIntersection
  performs task: operationTask
    type: SetIntersection
  input parameter: parameter
    has parameter name text: collection2
    has parameter type: collectionParameter
    object type: Object
  input parameter: parameter
    has parameter name text: collection1
    has parameter type: collectionParameter
    object type: Object
  output parameter: parameter
    has parameter name text: IntersectionCollection
    has parameter type: collectionParameter
    object type: Object

samples.jmoby.net,getRandomImage
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,getRandomImage:2006-03-20T13-16-13Z
location URI: http://mobycentral.icapture.ubc.ca:8090/axis/services/getRandomImage
has service description text: It brings back a random image. But a user can influence the choice of the returned image by requesting an image by sending a particular number (unknown numbers are ignored, and a random image is returned).
has service name text: getRandomImage
is alive: true
provided by: organisation
  authoritative: true
  publisher: samples.jmoby.net
has operation: operation
  has operation name text: getRandomImage
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: imageNumber
    object type: Integer
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: image
    object type: text-base64
    has parameter type: simpleParameter

samples.jmoby.net,HelloBiomobyWorld
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,HelloBiomobyWorld:2006-03-04T00-16-52Z
location URI: http://mobycentral.icapture.ubc.ca:8090/axis/services/HelloBiomobyWorld
has service description text: This is a cult service, known to an exclusive group of persons sharing an esoteric interest. One of their believes is that a word started on January, 1 1970.
has service name text: HelloBiomobyWorld
is alive: true
provided by: organisation
  authoritative: true
  publisher: samples.jmoby.net
has operation: operation
  has operation name text: HelloBiomobyWorld
  performs task: operationTask
    type: Retrieval
  output parameter: parameter
    has parameter name text: greeting
    object type: String
    has parameter type: simpleParameter

samples.jmoby.net,HelloBiomobyWorld TMP 4
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,HelloBiomobyWorld_TMP_4:2006-09-28T20-02-10Z
location URI: http://mobycentral.icapture.ubc.ca:8090/axis/services/HelloBiomobyWorld
has service description text: Yes, you can unregister this service anytime...
has service name text: HelloBiomobyWorld_TMP_4
is alive: true
provided by: organisation
  authoritative: true
  publisher: samples.jmoby.net
has operation: operation
  has operation name text: HelloBiomobyWorld_TMP_4
  performs task: operationTask
    type: Testing
  input parameter: parameter
    has parameter name text: Object
    object type: Object
    has parameter type: simpleParameter

samples.jmoby.net,TextExtract
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,TextExtract:2006-03-04T00-18-29Z
location URI: http://mobycentral.icapture.ubc.ca:8090/axis/services/TextExtract
has service description text: This service extracts the real content of an input text and return it as a primitive String type. The main reason is to show that one can send a more specialized data type to this service (even though the service claims that it operates only on text-plain data type). The service is part of the tutorial and documentation of the Moses system - its source code is distributed with jMoby.
has service name text: TextExtract
is alive: true
provided by: organisation
  authoritative: true
  publisher: samples.jmoby.net
has operation: operation
  has operation name text: TextExtract
  performs task: operationTask
    type: Conversion
  input parameter: parameter
    has parameter name text: input
    object type: text plain
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: result
    object type: String
    has parameter type: simpleParameter

samples.jmoby.net,Mabuhay
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,Mabuhay:2006-03-04T00-19-35Z
location URI: http://mobycentral.icapture.ubc.ca:8090/axis/services/Mabuhay
has service description text: How to say "Hello" in many languages. Heavily based on a web resource "Greetings in more than 800 languages", maintained at http://www.elite.net/~runner/jennifers/hello.htm by Jennifer Runner.
has service name text: Mabuhay
is alive: true
provided by: organisation
  authoritative: true
  publisher: samples.jmoby.net
has operation: operation
  has operation name text: Mabuhay
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: language
    object type: Regex
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: hello
    has parameter type: collectionParameter
    object type: simple key value pair

ccgb.umn.edu,test3 SequenceToFASTA
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:ccgb.umn.edu,test3_SequenceToFASTA:2001-09-21T16-00-00Z
location URI: http://ccgb.umn.edu/cgi-bin/MobyEd_dispatcher.cgi
has service description text: Example service: formats a sequence in FASTA format
has service name text: test3_SequenceToFASTA
is alive: true
provided by: organisation
  authoritative: false
  publisher: ccgb.umn.edu
has operation: operation
  has operation name text: test3_SequenceToFASTA
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: GenericSequence
    has parameter type: simpleParameter
  output parameter: parameter
    object type: FASTA
    has parameter type: simpleParameter

ccgb.umn.edu,GI2ScientificName
type: serviceDescription
format: moby
location URI: http://ccgb.umn.edu/cgi-bin/GI2ScDispatch
has service description text: Get the scientific name corresponding to GenBank GI
has service name text: GI2ScientificName
is alive: true
provided by: organisation
  authoritative: false
  publisher: ccgb.umn.edu
has operation: operation
  has operation name text: GI2ScientificName
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    object type: String
    has parameter type: simpleParameter

ccgb.umn.edu,text2accn
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:ccgb.umn.edu,text2accn:2001-09-21T16-00-00Z
location URI: http://ccgb.umn.edu/cgi-bin/MobyApp/ex2/dispatch
has service description text: Provide NCBI/EMBL/DDBJ accessions for a word
has service name text: text2accn
is alive: true
provided by: organisation
  authoritative: false
  publisher: ccgb.umn.edu
has operation: operation
  has operation name text: text2accn
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: String
    has parameter type: simpleParameter
  output parameter: parameter
    object type: String
    has parameter type: simpleParameter

ccgb.umn.edu,MtKeyword
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:ccgb.umn.edu,MtKeyword:2001-09-21T16-00-00Z
location URI: http://ccgb.umn.edu/cgi-bin/MtKDispatch
has service description text: Get accession of all Mt entries with <keyword> connection
has service name text: MtKeyword
is alive: true
provided by: organisation
  authoritative: false
  publisher: ccgb.umn.edu
has operation: operation
  has operation name text: MtKeyword
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    object type: Global Keyword
    has parameter type: simpleParameter
  output parameter: parameter
    object type: String
    has parameter type: simpleParameter

genome.imim.es,runMultiPairwiseMetaAlignmentGFF
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,runMultiPairwiseMetaAlignmentGFF:2006-07-21T16-40-59Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Runs Meta-alignment software on a multiple running mode, receiving a collection of maps, making pairs of them and, foreach pair, producing, in GFF format, alignments of sequences of TF binding sites
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: runMultiPairwiseMetaAlignmentGFF
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: runMultiPairwiseMetaAlignmentGFF
  performs task: operationTask
    type: Alignment
  input parameter: parameter
    has parameter name text: maps
    has parameter type: collectionParameter
    object type: GFF
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: mu penalty
    has default value: 0.1
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: lamba penalty
    has default value: 0.1
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: alpha penalty
    has default value: 0.5
    datatype: Float
  output parameter: parameter
    has parameter name text: meta_predictions
    has parameter type: collectionParameter
    object type: GFF

genome.imim.es,fromFASTAToAminoAcidSequence
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,fromFASTAToAminoAcidSequence:2006-07-21T16-13-17Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Converts aminoacid FASTA sequence into an aminoacid sequence
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: fromFASTAToAminoAcidSequence
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: fromFASTAToAminoAcidSequence
  performs task: operationTask
    type: Conversion
  input parameter: parameter
    has parameter name text: sequence
    object type: FASTA AA
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: sequence
    object type: AminoAcidSequence
    has parameter type: simpleParameter

genome.imim.es,runMetaAlignmentGFF
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,runMetaAlignmentGFF:2006-07-21T16-40-06Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Produces alignments of sequences of TF binding sites and returns the predictions in GFF format. You can use runMatScanGFF to produce the input GFF files, specifying the 'log-likelihood' matrix mode
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: runMetaAlignmentGFF
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: runMetaAlignmentGFF
  performs task: operationTask
    type: Alignment
  input parameter: parameter
    has parameter name text: map2
    object type: GFF
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter name text: map1
    object type: GFF
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: alpha penalty
    has default value: 0.5
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: mu penalty
    has default value: 0.1
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: lamba penalty
    has default value: 0.1
    datatype: Float
  output parameter: parameter
    has parameter name text: meta_predictions
    object type: GFF
    has parameter type: simpleParameter

genome.imim.es,getUpstreamSeqFromEnsembl
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,getUpstreamSeqFromEnsembl:2006-07-21T16-55-53Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Sequence retrieval tool from Ensembl database. It returns the upstream sequence of a given set of Ensembl gene identifiers. These identifiers could be external ones, such as Refseq Ids or Affymetrix ids.
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: getUpstreamSeqFromEnsembl
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: getUpstreamSeqFromEnsembl
  performs task: operationTask
    type: Retrieval
  input parameter: parameter
    has parameter name text: genes
    object type: List Text
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: upstream length
    has default value: 2000
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: intergenic only
    has default value: False
    datatype: String
    enum: True
    enum: False
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: downstream length
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: organism
    has default value: Homosapiens
    datatype: String
    enum: Bos taurus
    enum: Gallus gallus
    enum: Saccharomyces cerevisiae
    enum: Canis familiaris
    enum: Ciona intestinalis
    enum: Apis mellifera
    enum: Homo sapiens
    enum: Takifugu rubripes
    enum: Mus musculus
    enum: Tetraodon nigroviridis
    enum: Anopheles gambiae
    enum: Danio rerio
    enum: Pan troglodytes
    enum: Drosophila melanogaster
    enum: Monodelphis domestica
    enum: Macaca mulatta
    enum: Xenopus tropicalis
    enum: Rattus norvegicus
    enum: Caenorhabditis elegans
  output parameter: parameter
    has parameter name text: upstream_sequences
    has parameter type: collectionParameter
    object type: CommentedDNASequence
    in namespaces: parameterNamespace
      type: ENSEMBL

genome.imim.es,runMultiPairwiseMetaAlignment
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,runMultiPairwiseMetaAlignment:2006-07-21T16-41-13Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Runs Meta-alignment software on a multiple running mode, receiving a collection of maps, making pairs of them and, foreach pair, producing, in 'Meta-alignment' format, alignments of sequences of TF binding sites
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: runMultiPairwiseMetaAlignment
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: runMultiPairwiseMetaAlignment
  performs task: operationTask
    type: Alignment
  input parameter: parameter
    has parameter name text: maps
    has parameter type: collectionParameter
    object type: GFF
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: lamba penalty
    has default value: 0.1
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: alpha penalty
    has default value: 0.5
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: mu penalty
    has default value: 0.1
    datatype: Float
  output parameter: parameter
    has parameter name text: meta_predictions
    has parameter type: collectionParameter
    object type: Meta Alignment Text

genome.imim.es,filterSequencesAndQualityDataByLength
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,filterSequencesAndQualityDataByLength:2006-08-04T15-28-00Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Filters a set of sequences based on their length. Only sequences which length is greater than the length cutoff will be returned. It also filters out the quality data associated with the removed sequences.
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: filterSequencesAndQualityDataByLength
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: filterSequencesAndQualityDataByLength
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: sequences
    object type: FASTA NA multi
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter name text: base_quality_data
    object type: FASTA Base Quality multi
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: length_cutoff
    has default value: 75
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: trim_masked_regions
    has default value: Off
    datatype: String
    enum: Off
    enum: On
  output parameter: parameter
    has parameter name text: filtered_base_quality_data
    object type: FASTA Base Quality multi
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: filtered_sequences
    object type: FASTA NA multi
    has parameter type: simpleParameter

genome.imim.es,runMatScanGFF
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,runMatScanGFF:2006-07-21T16-34-13Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Analyzes a DNA sequence for putative transcription factor binding sites from Transfac or Jaspar and reports them in GFF format
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: runMatScanGFF
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: runMatScanGFF
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: sequence
    object type: DNASequence
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: matrix mode
    has default value: log-likelihood
    datatype: String
    enum: raw format
    enum: log-likelihood
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: threshold
    has default value: 0.85
    datatype: Float
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: motif database
    has default value: Transfac
    datatype: String
    enum: Transfac
    enum: Jaspar
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: strand
    has default value: Both
    datatype: String
    enum: Forward
    enum: Reverse
    enum: Both
  output parameter: parameter
    has parameter name text: matscan_predictions
    object type: GFF
    has parameter type: simpleParameter

genome.imim.es,parseMotifMatricesFromMEME
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,parseMotifMatricesFromMEME:2006-07-21T16-32-01Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Parses the score or probability motif matrices from MEME output
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: parseMotifMatricesFromMEME
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: parseMotifMatricesFromMEME
  performs task: operationTask
    type: Parsing
  input parameter: parameter
    has parameter name text: meme_predictions
    object type: MEME Text
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: matrix mode
    has default value: log-likelihood
    datatype: String
    enum: raw format
    enum: log-likelihood
  output parameter: parameter
    has parameter name text: motif_weight_matrices
    has parameter type: collectionParameter
    object type: Matrix

genome.imim.es,runPhrap
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,runPhrap:2006-08-04T15-23-07Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Runs Phrap to Assemble a set of DNA sequences
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: runPhrap
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: runPhrap
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: sequences
    object type: FASTA NA multi
    has parameter type: simpleParameter
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: node_seg
    has default value: 8
    datatype: Integer
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: node_space
    has default value: 4
    datatype: Integer
  output parameter: parameter
    has parameter name text: assembly
    object type: Ace Text
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: contig_and_singlet_sequences
    object type: FASTA NA multi
    has parameter type: simpleParameter

genome.imim.es,runPhredCollection
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,runPhredCollection:2006-08-04T15-24-32Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Phred writes the base calls from a set of chromatograms and returns a set of DNA sequences and FASTA base quality data
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: runPhredCollection
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: runPhredCollection
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: traces
    has parameter type: collectionParameter
    object type: Chromatogram Encoded
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: trim_alt
    has default value: Off
    datatype: String
    enum: On
    enum: Off
  input parameter: parameter
    has parameter type: secondaryParameter
    has parameter name text: trim_cutoff
    has default value: 0.05
    datatype: Float
  output parameter: parameter
    has parameter name text: base_quality_data
    object type: FASTA Base Quality multi
    has parameter type: simpleParameter
  output parameter: parameter
    has parameter name text: sequences
    object type: FASTA NA multi
    has parameter type: simpleParameter

genome.imim.es,runDustCollection
type: serviceDescription
format: moby
identifier: urn:lsid:biomoby.org:serviceinstance:genome.imim.es,runDustCollection:2006-05-03T13-22-03Z
location URI: http://genome.imim.es/cgi-bin/moby/MobyServices.cgi
has service description text: Runs dust to mask low-complexity regions within a set of DNA sequences
has service description location: http://genome.imim.es/webservices/RDFs/services.rdf
has service name text: runDustCollection
is alive: true
provided by: organisation
  authoritative: false
  publisher: genome.imim.es
has operation: operation
  has operation name text: runDustCollection
  performs task: operationTask
    type: Analysis
  input parameter: parameter
    has parameter name text: sequences
    has parameter type: collectionParameter
    object type: DNASequence

parameter
has parameter type: secondaryParameter
has parameter name text: M
has default value: BLOSUM62
datatype: String
enum: BLOSUM45
enum: BLOSUM62
enum: BLOSUM80
enum: PAM30
enum: PAM70

parameter
has parameter type: secondaryParameter
has parameter name text: C
min: 0
max: 3
has default value: 0
datatype: Integer
enum: 0
enum: 1
enum: 2
enum: 3

parameter
has parameter type: secondaryParameter
has parameter name text: f
min: 0
has default value: 0
datatype: Integer

parameter
has parameter type: secondaryParameter
has parameter name text: L
datatype: String

parameter
has parameter type: secondaryParameter
has parameter name text: A
min: 0
has default value: 0
datatype: Integer

parameter
has parameter type: secondaryParameter
has parameter name text: n
has default value: F
datatype: String
enum: T
enum: F

parameter
has parameter type: secondaryParameter
has parameter name text: X
min: 0
has default value: 0
datatype: Integer

parameter
has parameter type: secondaryParameter
has parameter name text: P
min: 0
max: 2
has default value: 0
datatype: Integer
enum: 0
enum: 1
enum: 2

parameter
has parameter type: secondaryParameter
has parameter name text: m
min: 7
max: 7
has default value: 7
datatype: Integer
enum: 7

parameter
has parameter name text: output
object type: BlastJob
has parameter type: simpleParameter
in namespaces: parameterNamespace
  type: blast

parameter
has parameter name text: result
object type: URL
has parameter type: simpleParameter
in namespaces: parameterNamespace
  type: blast

parameter
has parameter name text: user
object type: User
has parameter type: simpleParameter
in namespaces: parameterNamespace
  type: www.bioinformatics.nl