GCP_Organization
comment: A GCP_LegalEntity specific to an organization entity recognized in legal terms as having a legal personality (i.e. able to own property, liable for legal prosecution, etc.)
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Organization:2006-11-28T09-24-03Z
subclass of: GCP_LegalEntity

GCP_LegalEntity
comment: GCP_LegalEntity represents a general subclass for any GCP_Entity recognized in legal terms as having a legal personality (i.e. ability to have human behaviour as an individual or in aggregate, able to own property, liable for legal prosecution, etc.). This includes both person and organization. - contactingDetails. A LegalEntity obviously has details relating to its localization in the human world. For efficiency, we treat instances of another moby data type, GCP_ContactingDetails, as a subclass of GCP_Identifier, and referencing these details from GCP_LegalEntity using the pertinent GCP_SimpleIdentifier. A LegalEntity may have several such contactingDetails.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_LegalEntity:2006-11-28T09-23-35Z
subclass of: GCP_Entity

GCP_Entity
comment: A GCP_Entity is a generic MOBY data type for encapsulating the generic properties of GCP scientific objects("Entity") like identification (synonyms), documentation (primary citation) and general feature annotation. Since GCP_Entity inherit from GCP_Identifier, they are uniquely identifiable objects(and from there it has a link to a NameSpace and Authority to which this Entity belongs). - primaryCitation: This is a source that cites or makes mention of the GCP_Entity. More specifically, it points to a GCP_SimpleIdentifier that resolves to a GCP_BiblioReference. - annotation: This is a description of the GCP Entity. More specifically, this points to GCP_SimpleIdentifiers that resolve to GCP_Feature objects. - synonyms: This is documented by a list of GCP_Identifier instances that provide alternate names for a GCP Entity.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Entity:2006-11-28T09-15-04Z
subclass of: GCP_Identifier
hasa: GCP Entity cHJpbWFyeUNpdGF0aW9u%0A
has: GCP Entity cmVsYXRpb25zaGlwcw%3D%3D%0A
has: GCP Entity c3lub255bXM%3D%0A
has: GCP Entity YW5ub3RhdGlvbnM%3D%0A
has: GCP Entity Y2l0YXRpb25z%0A
has: GCP Entity c3R1ZGllcw%3D%3D%0A
hasa: GCP Entity dHlwZQ%3D%3D%0A

GCP_Identifier
comment: A more heavily annotated identifier intended to capture the additional semantics of the Generation CP Identifier object. - description. A free text describing the purpose of this Identifier. - version. Part of an identifier can be a version.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Identifier:2006-11-28T08-22-15Z
hasa: GCP Identifier dmVyc2lvbg%3D%3D%0A
subclass of: GCP_SimpleIdentifier
hasa: GCP Identifier ZGVzY3JpcHRpb24%3D%0A

String
comment: a string
publisher: openinformatics.com
identifier: urn:lsid:biomoby.org:objectclass:String:2001-09-21T16-00-00Z
subclass of: Object

Object
comment: a base object class consisting of a namespace and an identifier
publisher: openinformatics.com
identifier: urn:lsid:biomoby.org:objectclass:Object:2001-09-21T16-00-00Z

GCP Identifier dmVyc2lvbg%3D%3D%0A
type: String
article name: version

GCP_SimpleIdentifier
comment: A light weight data type, providing a wrapper for the global identifier (encoded in the namespace and id attributes) plus a human readable name, for all objects that are constrained semantically to be a Generation CP MOBY data object. The semantics of LSID's are assumed here, in which the MOBY namespace combines the LSID "Authority_NameSpace" and the LSID object identifier (and possibly, the version) is encoded in the MOBY object identifier.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_SimpleIdentifier:2006-11-28T07-43-56Z
hasa: GCP SimpleIdentifier bmFtZQ%3D%3D%0A
subclass of: Object

GCP SimpleIdentifier bmFtZQ%3D%3D%0A
type: String
article name: name

GCP Identifier ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

GCP Entity cHJpbWFyeUNpdGF0aW9u%0A
type: GCP_SimpleIdentifier
article name: primaryCitation

GCP_EntityRelationship
comment: GCP_EntityRelationship represent the relationships from a subject Entity to target object Entities. A GCP Entity can have a relationship with other GCP Entities, such as containment or derivation. Such relationship instances can document giving rise to a richly connected graph of general associations between all kinds of entities. For example, an instance of Germplasm (which is also an Entity) can point to another Germplasm (an Entity) using a relationship named derivedFrom, or sourceOf. - type. A GCP_SimpleIdentifier which identifies a GCP_OntologyTerm defining the relationship type. This is specified by an ontology term (terms from controlled vocabularies). - object. The target object instances of the relationship. These are GCP_SimpleIdentifiers that identify other GCP_Entities. - annotation. Semantically related sets of features recorded by GCP_SimpleIdentifiers. Note: more specific features of a given subclass of domain object (i.e. like GCP_Germplasm) may provide GCP_Features that are more precisely labeled by MOBY articleNames. Such annotation can, for instance, document additional details of how the subject Entity is transformed into the object Entity. For example, if the subject is a whole plant (Germplasm) from a field experiment, the object could be a BiologicalSample derived from a part of the plant by some experimental protocol (which could be attached to the EntityRelationship association).
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_EntityRelationship:2006-11-28T08-19-09Z
has: GCP EntityRelationship b2JqZWN0cw%3D%3D%0A
hasa: GCP EntityRelationship dHlwZQ%3D%3D%0A
subclass of: GCP_SimpleFeature

GCP EntityRelationship b2JqZWN0cw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: objects

GCP EntityRelationship dHlwZQ%3D%3D%0A
type: GCP_SimpleIdentifier
article name: type

GCP_SimpleFeature
comment: In MOBY, features are modeled at the most basic level as a GCP_SimpleFeature (equivalent to the Demeter SimpleFeature). A GCP_SimpleFeature inherits from GCP_SimpleIdentifier its capacity to be uniquely identified (by MOBY Object namespace and id) and to be given a human readable characteristic name label. In addition to identification, a GCP_SimpleFeature has a type which is specified as a GCP_SimpleIdentifier that is expected to resolve to a GCP_OntologyTerm (i.e. is in effect a SimpleOntologyTerm identifier in disguise). A GCP_SimpleFeature only represents any associated feature value as a valueString which is a MOBY:String object.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_SimpleFeature:2007-06-02T21-46-11Z
subclass of: GCP_SimpleIdentifier
hasa: GCP SimpleFeature dmFsdWVTdHJpbmc%3D%0A
hasa: GCP SimpleFeature dHlwZQ%3D%3D%0A

GCP SimpleFeature dmFsdWVTdHJpbmc%3D%0A
type: String
article name: valueString

GCP SimpleFeature dHlwZQ%3D%3D%0A
type: GCP_SimpleIdentifier
article name: type

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_EntityRelationship_YW5ub3RhdGlvbnM%3D%0A
type: GCP_SimpleIdentifier
article name: annotations

GCP Entity cmVsYXRpb25zaGlwcw%3D%3D%0A
type: GCP_EntityRelationship
article name: relationships

GCP Entity c3lub255bXM%3D%0A
type: GCP_SimpleIdentifier
article name: synonyms

GCP Entity YW5ub3RhdGlvbnM%3D%0A
type: GCP_SimpleIdentifier
article name: annotations

GCP Entity Y2l0YXRpb25z%0A
type: GCP_SimpleIdentifier
article name: citations

GCP Entity c3R1ZGllcw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: studies

GCP Entity dHlwZQ%3D%3D%0A
type: GCP_SimpleIdentifier
article name: type

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_LegalEntity_Y29udGFjdGluZ0RldGFpbHM%3D%0A
type: GCP_SimpleIdentifier
article name: contactingDetails

FeatureAASequence
comment: It's an AA sequence with an associated feature value as a array of floats
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:FeatureAASequence:2006-10-05T15-08-40Z
hasa: FeatureAASequence ZmVhdHVyZQ%3D%3D%0A
subclass of: AnnotatedAASequence

ArrayFloat
comment: ArrayFloat object.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:ArrayFloat:2006-03-21T11-50-38Z
subclass of: Array
hasa: ArrayFloat S2V5%0A
has: ArrayFloat RWxlbWVudA%3D%3D%0A

Array
comment: Array object.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Array:2006-03-21T11-48-57Z
subclass of: Object

Integer
comment: an int
publisher: openinformatics.com
identifier: urn:lsid:biomoby.org:objectclass:Integer:2001-09-21T16-00-00Z
subclass of: Object

ArrayFloat S2V5%0A
type: Integer
article name: Key

ElementFloat
comment: ElementFloat object for float arrays and matrixes.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:ElementFloat:2006-03-21T11-50-31Z
subclass of: Element
hasa: ElementFloat S2V5%0A
hasa: ElementFloat VmFsdWU%3D%0A

Element
comment: Element object for arrays and matrixes.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Element:2006-03-21T11-50-25Z
subclass of: Object

ElementFloat S2V5%0A
type: Integer
article name: Key

Float
comment: a floating point number
publisher: openinformatics.com
identifier: urn:lsid:biomoby.org:objectclass:Float:2001-09-21T16-00-00Z
subclass of: Object

ElementFloat VmFsdWU%3D%0A
type: Float
article name: Value

ArrayFloat RWxlbWVudA%3D%3D%0A
type: ElementFloat
article name: Element

FeatureAASequence ZmVhdHVyZQ%3D%3D%0A
type: ArrayFloat
article name: feature

AnnotatedAASequence
comment: Annotated aminoacid sequence
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:AnnotatedAASequence:2006-10-05T14-55-58Z
subclass of: CommentedAASequence

CommentedAASequence
comment: Represents a Amino Acid Sequence including a String (Description).
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:CommentedAASequence:2001-09-21T16-00-00Z
subclass of: AminoAcidSequence

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#CommentedAASequence_RGVzY3JpcHRpb24%3D%0A
type: String
article name: Description

AminoAcidSequence
comment: Lightweight representation an amino acid sequence
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:AminoAcidSequence:2001-09-21T16-00-00Z
subclass of: GenericSequence

GenericSequence
comment: Represents any molecule that can be described as a 'Sequence', including nucleotide (DNA, RNA, other), amino acid, or any other molecule with a sequence. This is most useful for cases where it is not known what specific type of molecule will be represented in the object.
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:GenericSequence:2001-09-21T16-00-00Z
subclass of: VirtualSequence

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GenericSequence_U2VxdWVuY2VTdHJpbmc%3D%0A
type: String
article name: SequenceString

VirtualSequence
comment: This root of the Sequence object hierarchy carries only the length of the sequence. Can be used, for example, to pre-screen results based on sequence size before retrieving a more heavyweight sequence object
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:VirtualSequence:2001-09-21T16-00-00Z
subclass of: Object
hasa: VirtualSequence TGVuZ3Ro%0A

VirtualSequence TGVuZ3Ro%0A
type: Integer
article name: Length

Dialign_Sequence_Format
comment: Dialign_Sequence_Format: generated as Outputformat from software program Dialign, which is a tool for multiple alignment developed by Burkhard Morgenstern et al in university goettingen, germany.
publisher: bibiserv.techfak.uni-bielefeld.de
identifier: urn:lsid:biomoby.org:objectclass:Dialign_Sequence_Format:2007-12-10T17-06-34Z
subclass of: Sequence_alignment_report

Sequence_alignment_report
comment: Sequence alginment reports.
publisher: org.inab.upc
identifier: urn:lsid:biomoby.org:objectclass:Sequence_alignment_report:2006-02-28T12-11-26Z
subclass of: text-formatted

text-formatted
comment: formatted plaintext, where the layout is important to meaning
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:text-formatted:2001-09-21T16-00-00Z
subclass of: text-plain

text-plain
comment: plaintext message
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:text-plain:2001-09-21T16-00-00Z
hasa: text-plain Y29udGVudA%3D%3D%0A
subclass of: Object

text-plain Y29udGVudA%3D%3D%0A
type: String
article name: content

SimpleAnnotatedJPEGImage
comment: An image with descriptive text
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:SimpleAnnotatedJPEGImage:2001-09-21T16-00-00Z
subclass of: b64_encoded_jpeg

b64_encoded_jpeg
comment: Base 64 encoded JPEG-format image
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:b64_encoded_jpeg:2001-09-21T16-00-00Z
subclass of: text-base64

text-base64
comment: base64-encoded data
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:text-base64:2001-09-21T16-00-00Z
subclass of: text-plain

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SimpleAnnotatedJPEGImage_RGVzY3JpcHRpb24%3D%0A
type: String
article name: Description

Scored_acronym_string
comment: Any text with a score or ranking associated, with possible acronym for keyword
publisher: www.inblosam.com
identifier: urn:lsid:biomoby.org:objectclass:Scored_acronym_string:2001-09-21T16-00-00Z
subclass of: Object
hasa: Scored acronym string c2NvcmU%3D%0A
hasa: Scored acronym string YWNyb255bQ%3D%3D%0A

Scored acronym string c2NvcmU%3D%0A
type: Float
article name: score

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Scored_acronym_string_c3RyaW5nX2NvbXBvbmVudA%3D%3D%0A
type: Object
article name: string_component

Scored acronym string YWNyb255bQ%3D%3D%0A
type: String
article name: acronym

ArrayInteger
comment: ArrayInteger object.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:ArrayInteger:2006-03-21T11-52-11Z
subclass of: Array
hasa: ArrayInteger S2V5%0A
has: ArrayInteger RWxlbWVudA%3D%3D%0A

ArrayInteger S2V5%0A
type: Integer
article name: Key

ElementInteger
comment: ElementInteger object for integer arrays and matrixes.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:ElementInteger:2006-03-21T11-51-55Z
subclass of: Element
hasa: ElementInteger S2V5%0A
hasa: ElementInteger VmFsdWU%3D%0A

ElementInteger S2V5%0A
type: Integer
article name: Key

ElementInteger VmFsdWU%3D%0A
type: Integer
article name: Value

ArrayInteger RWxlbWVudA%3D%3D%0A
type: ElementInteger
article name: Element

GCP_NameSpace
comment: GCP_NameSpace extends GCP_Identifier (so it can itself be identified) but forms an aggregation of related components which are related instances of GCP_Identifier.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_NameSpace:2007-06-05T04-48-55Z
has: GCP NameSpace Y29tcG9uZW50cw%3D%3D%0A
subclass of: GCP_Identifier

GCP NameSpace Y29tcG9uZW50cw%3D%3D%0A
type: GCP_Identifier
article name: components

TFscan_Text
comment: runEMBOSSTFscan output.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:TFscan_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

GCP_Effect
comment: GCP_Effect indexes the observation_units of of the study by the levels of specified factors, both of which are modeled as a MOBY:Collection of GCP_SimpleIdentifier objects that should resolve, respectively, to GCP_Factor descriptions, and GCP_ValueSet objects containing references to GCP_Value objects, the latter each of which whose index value should point to the GCP_Factor or GCP_Variate objects which document them.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Effect:2007-06-06T03-14-40Z
subclass of: Object
has: GCP Effect ZmFjdG9ycw%3D%3D%0A

GCP Effect ZmFjdG9ycw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: factors

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Effect_b2JzZXJ2YXRpb25Vbml0cw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: observationUnits

GCP_IdentifierSet
comment: The GCP domain model IdentifierSet is modeled in MOBY simply as labeled MOBY:Collections of GCP_SimpleIdentifiers. They can belong to any (and different) namespaces. For example, a list of synonyms for an instance of Germplasm is an IdentifierSet. IdentifierSet extends from GCP_SimpleIdentifier hence its name, MOBY:nameSpace and MOBY:nameSpace can be used to identify its context (e.g. as the synonyms IdentifierSet of an Germplasm object).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_IdentifierSet:2007-06-10T03-22-22Z
has: GCP IdentifierSet aWRlbnRpZmllcnM%3D%0A
subclass of: GCP_SimpleIdentifier

GCP IdentifierSet aWRlbnRpZmllcnM%3D%0A
type: GCP_SimpleIdentifier
article name: identifiers

TropGENE_Distance_Matrix
comment: distance matrix built from a Musa TropGENE_Diversity_Matrix object
publisher: tropgenedb.cirad.fr
identifier: urn:lsid:biomoby.org:objectclass:TropGENE_Distance_Matrix:2001-09-21T16-00-00Z
hasa: TropGENE Distance Matrix TWF0cml4%0A
subclass of: Object

TropGENE Distance Matrix TWF0cml4%0A
type: String
article name: Matrix

Haplotyping_Study_obj
comment: HapMap related objects
publisher: www.hapmap.org
identifier: urn:lsid:biomoby.org:objectclass:Haplotyping_Study_obj:2001-09-21T16-00-00Z
subclass of: Object

GCP_GenomicFeature
comment: A GCP_GenomicFeature is a kind of GCP_MapFeature that describes characterized segment of biological genetic information, corresponding to a DNA segment in the genome or a derivative thereof (see also the full GCP domain model description of a GenomicFeature). Being a GCP_MapFeature, a GCP_GenomicFeature generally embodies a suitable map position, identity and semantics as recorded by GCP_Feature articleNames. Basic general semantics (i.e. "I am a gene locus feature") is usually recorded in type article of the feature, but additional semantics may be recorded either in the specific values of the feature or in its supportingEvidence. How to split this semantics up is still a matter of evolving best practices. One might, for example, use the values field to connect a gene structure to its various other associated feature objects (e.g. structure parts - exons, utr's etc. - and products - transcripts, gene products - but use the supportingEvidence article to connect to more extensive annotation (such as detection protocol or sequence database citation). A GCP_GenomicFeature can report its assigned molecular genomicFeatureVariants, both identified by GCP_SimpleIdentifiers.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GenomicFeature:2007-06-13T12-59-53Z
subclass of: GCP_MapFeature

GCP_MapFeature
comment: A GCP_MapFeature models a kind of GCP_Feature that has a coordinate position on a coordinate-dimensioned space called a map, which is identified by a GCP_SimpleIdentifier (see GCP_Map below). The MapFeature class is subclassed into domain specific map feature concepts such as biological GenomicFeature and geographical Location classes. By definition, a MapFeature belongs to only one map; however, the point, interval or space located by the map feature may be mapped onto more than one map, and may have many associated characteristics, which are generally retrievable by suitable web services using the MOBY namespace and identifier associated with the GCP_MapFeature.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MapFeature:2007-06-13T02-20-10Z
subclass of: GCP_Feature
hasa: GCP MapFeature bWFw%0A

GCP_Feature
comment: A GCP_FeatureSet inherits most of its article names (attributes) from GCP_SimpleFeature but also includes a MOBY:Collection under the article name features which is itself, a set of GCP_SimpleFeature objects.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Feature:2007-06-03T18-08-11Z
has: GCP Feature c3VwcG9ydGluZ0V2aWRlbmNl%0A
has: GCP Feature dmFsdWVz%0A
hasa: GCP Feature dW5pdA%3D%3D%0A
subclass of: GCP_SimpleFeature

GCP Feature c3VwcG9ydGluZ0V2aWRlbmNl%0A
type: GCP_SimpleIdentifier
article name: supportingEvidence

GCP_Value
comment: A GCP_Value inherits directly from MOBY:Object and is a generic container for the Demeter Value model.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Value:2007-06-03T18-17-23Z
hasa: GCP Value aW5kZXg%3D%0A
has: GCP Value Y29uc3RyYWludHM%3D%0A
hasa: GCP Value ZGF0YQ%3D%3D%0A
subclass of: GCP_SimpleFeature

GCP Value aW5kZXg%3D%0A
type: Object
article name: index

GCP_Constraint
comment: GCP_Constraint is a kind of GCP_SimpleIdentifier. This data type specifies ways to limit or validate one or more GCP Value instances. - constraintDefinition. Provides additional information about the specific interpretation of the constraint.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Constraint:2006-11-28T08-19-55Z
subclass of: GCP_SimpleIdentifier

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Constraint_Y29uc3RyYWludERlZmluaXRpb24%3D%0A
type: String
article name: constraintDefinition

GCP Value Y29uc3RyYWludHM%3D%0A
type: GCP_Constraint
article name: constraints

GCP Value ZGF0YQ%3D%3D%0A
type: Object
article name: data

GCP Feature dmFsdWVz%0A
type: GCP_Value
article name: values

GCP Feature dW5pdA%3D%3D%0A
type: GCP_SimpleIdentifier
article name: unit

GCP MapFeature bWFw%0A
type: GCP_SimpleIdentifier
article name: map

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GenomicFeature_Z2Vub21pY0ZlYXR1cmVWYXJpYW50cw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: genomicFeatureVariants

Program
comment: A generic program object.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:Program:2006-03-01T18-35-17Z
subclass of: Object

TaxonTCS
comment: Taxon concept in TCS format.
publisher: www.gbif.org
identifier: urn:lsid:biomoby.org:objectclass:TaxonTCS:2006-08-21T08-51-47Z
subclass of: Object
hasa: TaxonTCS TmFtZVJlZg%3D%3D%0A
hasa: TaxonTCS U2NpZW50aWZpYw%3D%3D%0A
hasa: TaxonTCS TmFtZQ%3D%3D%0A
hasa: TaxonTCS QWNjb3JkaW5nVG8%3D%0A
has: TaxonTCS UmVsYXRpb25zaGlwcw%3D%3D%0A

TaxonTCS TmFtZVJlZg%3D%3D%0A
type: String
article name: NameRef

Boolean
comment: An object representing a boolean logic value (either "true" or "false")
publisher: moby.ucalgary.ca
identifier: urn:lsid:biomoby.org:objectclass:Boolean:2001-09-21T16-00-00Z
subclass of: Object

TaxonTCS U2NpZW50aWZpYw%3D%3D%0A
type: Boolean
article name: Scientific

TaxonTCS TmFtZQ%3D%3D%0A
type: String
article name: Name

TaxonTCS QWNjb3JkaW5nVG8%3D%0A
type: String
article name: AccordingTo

TaxonRelationship
comment: Defines a relation between two taxon concepts.
publisher: www.gbif.org
identifier: urn:lsid:biomoby.org:objectclass:TaxonRelationship:2006-08-21T08-46-28Z
subclass of: Object
hasa: TaxonRelationship VGF4b25Gcm9t%0A
hasa: TaxonRelationship UmVsYXRpb25zaGlw%0A
hasa: TaxonRelationship VGF4b25Ubw%3D%3D%0A

BriefTaxonConcept
comment: Brief description of a taxon returned by the GBIFGetTaxonConcepts.
publisher: www.gbif.org
identifier: urn:lsid:biomoby.org:objectclass:BriefTaxonConcept:2006-08-08T09-24-41Z
subclass of: Object
hasa: BriefTaxonConcept S2V5%0A
hasa: BriefTaxonConcept QWNjZXB0ZWQ%3D%0A

BriefTaxonConcept S2V5%0A
type: String
article name: Key

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BriefTaxonConcept_Q2Fub25pY2FsTmFtZQ%3D%3D%0A
type: String
article name: CanonicalName

BriefTaxonConcept QWNjZXB0ZWQ%3D%0A
type: Boolean
article name: Accepted

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BriefTaxonConcept_UHVibGljYXRpb25LZXk%3D%0A
type: String
article name: PublicationKey

TaxonRelationship VGF4b25Gcm9t%0A
type: BriefTaxonConcept
article name: TaxonFrom

TaxonRelationship UmVsYXRpb25zaGlw%0A
type: String
article name: Relationship

TaxonRelationship VGF4b25Ubw%3D%3D%0A
type: BriefTaxonConcept
article name: TaxonTo

TaxonTCS UmVsYXRpb25zaGlwcw%3D%3D%0A
type: TaxonRelationship
article name: Relationships

Regex
comment: This object can carry a regular expression. It can also say what kind of regular expression is carried. Additionally, it can contain some flags that may not be (in some regular expression languages) put directly in the regular expression. The only mandatory member is the regular expression itself ("regex"). The other members are: "format" specifies what language/format/engine is the "regex" for; typical values are Java, Perl, POSIX. "case_insensitive" is a flag that enables case-insensitive matching. "multiline_mode" is a flag that enables multiline mode. In multiline mode the expressions ^ and $ match just after or just before, respectively, a line terminator or the end of the input. "dotall_mode" is a flag that enables dotall mode. In dotall mode, the expression . matches any character, including a line terminator (in Perl, this mode is called single-line mode). "literal_mode" is a flag that enables literal parsing of the pattern. When this flag is specified then the input string that specifies the pattern is treated as a sequence of literal characters. Metacharacters or escape sequences in the input sequence will be given no special meaning. "comments" is a human-readable text explaining what this regular expression means.
publisher: samples.jmoby.net
identifier: urn:lsid:biomoby.org:objectclass:Regex:2001-09-21T16-00-00Z
hasa: Regex cmVnZXg%3D%0A
hasa: Regex Zm9ybWF0%0A
hasa: Regex Y2FzZV9pbnNlbnNpdGl2ZQ%3D%3D%0A
hasa: Regex bXVsdGlsaW5lX21vZGU%3D%0A
hasa: Regex ZG90YWxsX21vZGU%3D%0A
hasa: Regex bGl0ZXJhbF9tb2Rl%0A
hasa: Regex Y29tbWVudHM%3D%0A
subclass of: Object

Regex cmVnZXg%3D%0A
type: String
article name: regex

Regex Zm9ybWF0%0A
type: String
article name: format

Regex Y2FzZV9pbnNlbnNpdGl2ZQ%3D%3D%0A
type: Boolean
article name: case_insensitive

Regex bXVsdGlsaW5lX21vZGU%3D%0A
type: Boolean
article name: multiline_mode

Regex ZG90YWxsX21vZGU%3D%0A
type: Boolean
article name: dotall_mode

Regex bGl0ZXJhbF9tb2Rl%0A
type: Boolean
article name: literal_mode

Regex Y29tbWVudHM%3D%0A
type: String
article name: comments

BlatJob
comment: A BLAT job.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:BlatJob:2006-03-01T18-36-39Z
subclass of: Object
hasa: BlatJob ZmFzdGE%3D%0A
hasa: BlatJob ZGF0YWJhc2U%3D%0A

FASTA
comment: FASTA formatted sequence
publisher: www.sdsc.edu
identifier: urn:lsid:biomoby.org:objectclass:FASTA:2001-09-21T16-00-00Z
subclass of: text-formatted

BlatJob ZmFzdGE%3D%0A
type: FASTA
article name: fasta

DataBase
comment: A database object.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:DataBase:2006-03-01T18-35-12Z
subclass of: Object

BlatJob ZGF0YWJhc2U%3D%0A
type: DataBase
article name: database

GCP_Polygon
comment: A GeoPolygon is a GeoLinearFeature with a closed path (first equal last point).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Polygon:2007-06-17T06-23-54Z
subclass of: GCP_GeoLinearFeature

GCP_GeoLinearFeature
comment: A GeoLinearFeature is a set of line segments defined by two or more GeoPoints.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GeoLinearFeature:2007-06-17T06-23-02Z
subclass of: GCP_GeoPosition
has: GCP GeoLinearFeature dmVydGljZXM%3D%0A

GCP_GeoPosition
comment: Constrains GCP_MapPosition to be more GIS like. See Demeter GeoPosition model for details.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GeoPosition:2007-06-17T06-13-23Z
subclass of: GCP_MapPosition

GCP_MapPosition
comment: A GCP_MapPosition is a kind of GCP_Value pertaining to a position on a Map.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MapPosition:2007-06-17T01-24-01Z
subclass of: GCP_Value

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GeoPosition_Z2VvZ3JhcGhpY2FsRGF0dW0%3D%0A
type: GCP_SimpleIdentifier
article name: geographicalDatum

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GeoPosition_Z2VvZ3JhcGhpY2FsUHJvamVjdGlvbg%3D%3D%0A
type: GCP_SimpleIdentifier
article name: geographicalProjection

GCP_GeoPoint
comment: A GeoPoint is a GeoPosition that has singular latitude, longitude and elevation point coordinates. It may belong to a GCP_LinearFeature object.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GeoPoint:2007-06-17T06-18-27Z
subclass of: GCP_GeoPosition
hasa: GCP GeoPoint bGF0aXR1ZGU%3D%0A
hasa: GCP GeoPoint bG9uZ2l0dWRl%0A
hasa: GCP GeoPoint ZWxldmF0aW9u%0A
hasa: GCP GeoPoint bGluZWFyRmVhdHVyZQ%3D%3D%0A

GCP GeoPoint bGF0aXR1ZGU%3D%0A
type: GCP_Value
article name: latitude

GCP GeoPoint bG9uZ2l0dWRl%0A
type: GCP_Value
article name: longitude

GCP GeoPoint ZWxldmF0aW9u%0A
type: GCP_Value
article name: elevation

GCP GeoPoint bGluZWFyRmVhdHVyZQ%3D%3D%0A
type: GCP_SimpleIdentifier
article name: linearFeature

GCP GeoLinearFeature dmVydGljZXM%3D%0A
type: GCP_GeoPoint
article name: vertices

DGPI_report
comment: runDGPIGenericSequence report.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:DGPI_report:2001-09-21T16-00-00Z
subclass of: text-html

text-html
comment: HTML
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:text-html:2001-09-21T16-00-00Z
subclass of: text-formatted

GCP_GermplasmCollection
comment: GCP_GermplasmCollection is simply a set of germplasm, or rather, GCP_GermplasmNeighbourhood, that are managed by some legal entity, the owner, designated as the GCP_HoldingInstitute. The stocks of a GCP_GermplasmCollection are identified by GCP_SimpleIdentifiers that should resolve to those GCP_GermplasmNeighbourhood entries in the collection.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GermplasmCollection:2007-06-12T02-22-06Z
subclass of: GCP_SimpleIdentifier
hasa: GCP GermplasmCollection b3duZXI%3D%0A
has: GCP GermplasmCollection c3RvY2tz%0A

GCP GermplasmCollection b3duZXI%3D%0A
type: GCP_SimpleIdentifier
article name: owner

GCP GermplasmCollection c3RvY2tz%0A
type: GCP_SimpleIdentifier
article name: stocks

geneSNP
comment: SNPs and AA-changes in genes
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:geneSNP:2006-06-19T16-50-56Z
hasa: geneSNP cG9z%0A
hasa: geneSNP YWFfcG9z%0A
subclass of: Object
hasa: geneSNP c3RyYWlu%0A
hasa: geneSNP Y29kb25fcmVm%0A
hasa: geneSNP YWFfcmVm%0A
hasa: geneSNP Y29kb25fdmFy%0A
hasa: geneSNP YWFfdmFy%0A
hasa: geneSNP YWFfY2hhbmdl%0A

Position
comment: Physical position in chromosome (e.g. chromosome 1,2,..x; position count from 1 ).
publisher: www.nias.affrc.go.jp
identifier: urn:lsid:biomoby.org:objectclass:Position:2001-09-21T16-00-00Z
hasa: Position ZW5k%0A
hasa: Position c3RhcnQ%3D%0A
hasa: Position Y2hyb21vc29tZQ%3D%3D%0A
subclass of: Object

Position ZW5k%0A
type: Integer
article name: end

Position c3RhcnQ%3D%0A
type: Integer
article name: start

Position Y2hyb21vc29tZQ%3D%3D%0A
type: String
article name: chromosome

geneSNP cG9z%0A
type: Position
article name: pos

geneSNP YWFfcG9z%0A
type: Integer
article name: aa_pos

geneSNP c3RyYWlu%0A
type: String
article name: strain

geneSNP Y29kb25fcmVm%0A
type: String
article name: codon_ref

geneSNP YWFfcmVm%0A
type: String
article name: aa_ref

geneSNP Y29kb25fdmFy%0A
type: String
article name: codon_var

geneSNP YWFfdmFy%0A
type: String
article name: aa_var

geneSNP YWFfY2hhbmdl%0A
type: String
article name: aa_change

NCBI_Blast_Database
comment: a description of a sequence or protein database for use with NCBI BLAST
publisher: sgn.cornell.edu
identifier: urn:lsid:biomoby.org:objectclass:NCBI_Blast_Database:2001-09-21T16-00-00Z
subclass of: Object
hasa: NCBI Blast Database dGl0bGU%3D%0A
hasa: NCBI Blast Database aWROdW1iZXI%3D%0A
hasa: NCBI Blast Database ZmlsZUJhc2VuYW1l%0A
hasa: NCBI Blast Database bnVtU2VxdWVuY2Vz%0A
hasa: NCBI Blast Database Y29tbWVudA%3D%3D%0A

NCBI Blast Database dGl0bGU%3D%0A
type: String
article name: title

NCBI Blast Database aWROdW1iZXI%3D%0A
type: Integer
article name: idNumber

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#NCBI_Blast_Database_cHJvdGVpbk9yTnVjbGVvdGlkZQ%3D%3D%0A
type: String
article name: proteinOrNucleotide

NCBI Blast Database ZmlsZUJhc2VuYW1l%0A
type: String
article name: fileBasename

NCBI Blast Database bnVtU2VxdWVuY2Vz%0A
type: Integer
article name: numSequences

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#NCBI_Blast_Database_dW5peFRpbWVzdGFtcA%3D%3D%0A
type: Integer
article name: unixTimestamp

NCBI Blast Database Y29tbWVudA%3D%3D%0A
type: String
article name: comment

HypotheticalObject1
comment: a human-readable description of the object
publisher: blah.blah.blah
identifier: urn:lsid:biomoby.org:objectclass:HypotheticalObject1:2006-05-12T11-14-00Z
subclass of: Object

GFF2
comment: Generic Feature Format File type 2 (revised Sanger specification)
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:GFF2:2001-09-21T16-00-00Z
subclass of: GFF

GFF
comment: Generic Feature Format File (of any subtype)
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:GFF:2001-09-21T16-00-00Z
subclass of: text-formatted

RNAML
comment: Syntax for exchanging RNA information. This syntax was designed to easily express data on RNA sequence and structure, and to allow the transmission of information among the RNA community.
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:RNAML:2006-02-09T09-24-45Z
subclass of: text-xml

text-xml
comment: XML formatted text
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:text-xml:2001-09-21T16-00-00Z
subclass of: text-formatted

BLAST-Text
comment: PSIBLAST report
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:BLAST-Text:2001-09-21T16-00-00Z
subclass of: text-formatted

PropertySequence
comment: Symbolic sequence based is a given property
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:PropertySequence:2006-10-04T13-55-48Z
subclass of: GenericSequence
hasa: PropertySequence ZGVzY3JpcHRpb24%3D%0A

PropertySequence ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

Features
comment: Collection of name and value pairs
publisher: chado.cirad.fr
identifier: urn:lsid:biomoby.org:objectclass:Features:2006-05-02T14-20-54Z
subclass of: Object
has: Features ZmVhdHVyZQ%3D%3D%0A

simple_key_value_pair
comment: Basic key/value pair object for key/value pairs with a 1:1 relationship
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:simple_key_value_pair:2001-09-21T16-00-00Z
subclass of: Object
hasa: simple key value pair dmFsdWU%3D%0A
hasa: simple key value pair a2V5%0A

simple key value pair dmFsdWU%3D%0A
type: String
article name: value

simple key value pair a2V5%0A
type: String
article name: key

Features ZmVhdHVyZQ%3D%3D%0A
type: simple_key_value_pair
article name: feature

Meta_Alignment_Text
comment: Meta-alignment text report
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:Meta_Alignment_Text:2006-03-21T21-49-03Z
subclass of: text_formatted

text_formatted
comment: Fractional solvation report
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:text_formatted:2006-03-15T17-37-53Z
subclass of: text_plain

text_plain
comment: testo plain
publisher: www.tttd.edu
identifier: urn:lsid:biomoby.org:objectclass:text_plain:2001-09-21T16-00-00Z
hasa: text plain Y29udGVudA%3D%3D%0A
subclass of: Object

text plain Y29udGVudA%3D%3D%0A
type: String
article name: content

GCP_CorrelatedLinkageMapSet
comment: A GCP_CorrelatedLinkageMapSet is a kind of GCP_CorrelatedMapSet composed of GCP_LinkageMap objects. The set may specify a consensusMap which is the integration of all maps in the set into one GCP_LinkageMap (identified by GCP_SimpleIdentifier). An example of this is a contig map of physical or sequence clones.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_CorrelatedLinkageMapSet:2007-06-17T02-46-10Z
subclass of: GCP_CorrelatedMapSet

GCP_CorrelatedMapSet
comment: Used for comparative mapping, a CorrelatedMapSet aggregates a set of Map objects that can be related to one another by a common set of MapFeatures, that are themselves documented in a CorrelatedMapFeatureSet.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_CorrelatedMapSet:2007-06-17T01-15-15Z
subclass of: GCP_Map

GCP_Map
comment: A GCP_Map is a collection of map_features instances are just represented as GCP_SimpleIdentifier which identify corresponding GCP_MapFeature objects (usually retrievable using a separate web service). This class can manage either genetic or geographic map features, depending on the context specified by map_type. GCP_Map also may have a specified units for the map (e.g. centiMorgan, degrees). Both map_type and units are specified by ontology terms identified by GCP_SimpleIdentifier. Although the GCP model specifies that maps are a kind of map feature, GCP_Map are modeled separately from GCP_MapFeature for simplicity. GCP_Map inherits from GCP_SimpleIdentifier. If it is feasible and desirable to embed maps into maps (e.g. see map layers below), it is assumed that one could use the GCP_Map as a source of GCP_SimpleIdentifier for a context requiring specification of a GCP_MapFeature identifier.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Map:2006-11-28T09-25-17Z
subclass of: GCP_Entity
hasa: GCP Map dW5pdHM%3D%0A
has: GCP Map bWFwRmVhdHVyZQ%3D%3D%0A

GCP Map dW5pdHM%3D%0A
type: GCP_SimpleIdentifier
article name: units

GCP Map bWFwRmVhdHVyZQ%3D%3D%0A
type: GCP_SimpleIdentifier
article name: mapFeature

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_CorrelatedMapSet_Y29ycmVsYXRlZE1hcHM%3D%0A
type: GCP_SimpleIdentifier
article name: correlatedMaps

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_CorrelatedMapSet_Y29ycmVsYXRlZE1hcEZlYXR1cmVz%0A
type: GCP_SimpleIdentifier
article name: correlatedMapFeatures

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_CorrelatedLinkageMapSet_Y29uc2Vuc3VzTWFw%0A
type: GCP_SimpleIdentifier
article name: consensusMap

GCP_Variate
comment: Variates are the dependent (measured) variables applied to a studyGCP_Study objects dereference their variates via a MOBY:Collection of GCP_SimpleIdentifier objects that resolve to GCP_Variate objects. GCP_Variate inherits most of its functionality from GCP_Feature. Variate property, scale and method are as per GCP_Factor narrative above. GCP_Variate reports its dataRange as a GCP_Constraint.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Variate:2007-06-06T02-50-30Z
hasa: GCP Variate ZGF0YVJhbmdl%0A
subclass of: GCP_Feature

GCP Variate ZGF0YVJhbmdl%0A
type: GCP_Constraint
article name: dataRange

Testak
comment: Tetsing, will be removed soon...
publisher: samples.jmoby.net
identifier: urn:lsid:biomoby.org:objectclass:Testak:2006-09-27T10-49-46Z
hasa: Testak NXN0cmFuZA%3D%3D%0A
subclass of: Object
hasa: Testak M3N0cmFuZA%3D%3D%0A

Testak NXN0cmFuZA%3D%3D%0A
type: String
article name: 5strand

Testak M3N0cmFuZA%3D%3D%0A
type: String
article name: 3strand

ABI_Encoded
comment: Trace data in ABI format
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:ABI_Encoded:2006-05-17T12-51-53Z
subclass of: Chromatogram_Encoded

Chromatogram_Encoded
comment: Generic trace binary data object
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:Chromatogram_Encoded:2006-05-16T14-51-50Z
subclass of: Object
hasa: Chromatogram Encoded cmF3ZGF0YQ%3D%3D%0A

Chromatogram Encoded cmF3ZGF0YQ%3D%3D%0A
type: String
article name: rawdata

GazOutput
comment: Output of the Gazeteer program - lat and long
publisher: cipotato.org
identifier: urn:lsid:biomoby.org:objectclass:GazOutput:2001-09-21T16-00-00Z
hasa: GazOutput TGF0TG9uZw%3D%3D%0A
subclass of: Object

GazOutput TGF0TG9uZw%3D%3D%0A
type: String
article name: LatLong

GCP_NucleotideSequence
comment: A GCP_NucleotideSequence is a kind of GCP_Sequence that is composed of nucleic acid base pairs (DNA or RNA).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_NucleotideSequence:2007-06-17T05-43-36Z
subclass of: GCP_Sequence

GCP_Sequence
comment: GCP_Sequence models a fully annotated (nucleotide or protein) sequence (which is a GCP_SimpleSequence containing the actual sequence text). GCP_Sequence inherits from GCP_Map which models mapFeature contents, which in the case of sequences would be "sequence features", that is, simply a specialized kind of GCP_MapFeature.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Sequence:2007-06-17T05-27-29Z
subclass of: GCP_PhysicalMap
hasa: GCP Sequence c2VxdWVuY2U%3D%0A

GCP_PhysicalMap
comment: A GCP_PhysicalMap is a GCP_LinkageMap constructed by direct physical measurements of genomic DNA.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_PhysicalMap:2007-06-17T05-17-55Z
subclass of: GCP_LinkageMap

GCP_LinkageMap
comment: GCP_LinkageMap represents any kind of biological (genetic/genomic) GCP_Map of type designated by its mapType (article inherited from GCP_Map). There are many kinds of map types (describe by ontology terms) such as genetic, physical, cytogenetic, hapmaps, etc. Such maps contain, of course, biological kinds of mapfeatures (also inherited from GCP_Map) which are going resolve to instances of GCP_GenomicFeature. A GCP_LinkageMap is usually assigned to a specified chromosome and has a given length.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_LinkageMap:2007-06-17T02-39-58Z
hasa: GCP LinkageMap bGVuZ3Ro%0A
hasa: GCP LinkageMap Y2hyb21vc29tZQ%3D%3D%0A
subclass of: GCP_Map
hasa: GCP LinkageMap bWFwU3R1ZHk%3D%0A

GCP LinkageMap bGVuZ3Ro%0A
type: GCP_Feature
article name: length

GCP LinkageMap Y2hyb21vc29tZQ%3D%3D%0A
type: GCP_SimpleIdentifier
article name: chromosome

GCP LinkageMap bWFwU3R1ZHk%3D%0A
type: GCP_SimpleIdentifier
article name: mapStudy

GCP_SimpleSequence
comment: A GCP_SimpleSequence is a kind of GCP_SimpleFeature with a specified type defined by GCP_SimpleIdentifier identifying a GCP_OntologyTerm and a valueString corresponding to the content of a biological sequence, which should be a string of letters encoding for nucleotide base pairs or amino acid residues, in accordance with IUPAC conventions.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_SimpleSequence:2007-06-02T23-16-27Z
subclass of: GCP_SimpleFeature

GCP Sequence c2VxdWVuY2U%3D%0A
type: GCP_SimpleSequence
article name: sequence

List_Text
comment: List of values in text format where each line has one value
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:List_Text:2006-07-06T15-35-53Z
subclass of: text_formatted

SeqDescription
comment: Sequence Description.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:SeqDescription:2001-09-21T16-00-00Z
subclass of: Object
hasa: SeqDescription RGVzY3JpcHRpb24%3D%0A

SeqDescription RGVzY3JpcHRpb24%3D%0A
type: String
article name: Description

nsSNP_protein
comment: Contains two string values: aa_var, aa_pos
publisher: icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:nsSNP_protein:2006-03-31T20-49-34Z
subclass of: Object
hasa: nsSNP protein YWFfdmFy%0A
hasa: nsSNP protein YWFfcG9z%0A

nsSNP protein YWFfdmFy%0A
type: String
article name: aa_var

nsSNP protein YWFfcG9z%0A
type: String
article name: aa_pos

MEME_Text
comment: MEME text output
publisher: www.sdsc.edu
identifier: urn:lsid:biomoby.org:objectclass:MEME_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

DIGDescription
comment: A concept description in DIG format
publisher: eva.mpg.de
identifier: urn:lsid:biomoby.org:objectclass:DIGDescription:2001-09-21T16-00-00Z
hasa: DIGDescription ZGVzY3JpcHRpb24%3D%0A
subclass of: Object

DIGDescription ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

Transmembrane_fragments
comment: Transmembrane spanning regions predicted by runEMBOSSTmapSingleSequence service.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Transmembrane_fragments:2001-09-21T16-00-00Z
subclass of: Object
hasa: Transmembrane fragments RnJvbQ%3D%3D%0A
hasa: Transmembrane fragments VG8%3D%0A
hasa: Transmembrane fragments SGl0Y291bnQ%3D%0A
has: Transmembrane fragments

Transmembrane fragments RnJvbQ%3D%3D%0A
type: Integer
article name: From

Transmembrane fragments VG8%3D%0A
type: Integer
article name: To

Transmembrane fragments SGl0Y291bnQ%3D%0A
type: Integer
article name: Hitcount

Transmembrane_table
comment: Table showing the predicted transmembrane spanning regions in a sequence.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Transmembrane_table:2001-09-21T16-00-00Z
hasa: Transmembrane table U3RhcnQ%3D%0A
subclass of: Object
hasa: Transmembrane table RW5k%0A

Transmembrane table U3RhcnQ%3D%0A
type: Integer
article name: Start

Transmembrane table RW5k%0A
type: Integer
article name: End

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Transmembrane_table_RnJhZ21lbnROdW1iZXI%3D%0A
type: Integer
article name: FragmentNumber

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Transmembrane_table_U3Vic2VxdWVuY2U%3D%0A
type: String
article name: Subsequence

GCGRSF_Sequence_Format
comment: GCG-RSF (rich sequence format): The new GCG-RSF can contain several sequences in one file. This format should only be used if the file was created with the GCG package.(Dataname: most *.seq, but *.gcg is better)
publisher: bibiserv.techfak.uni-bielefeld.de
identifier: urn:lsid:biomoby.org:objectclass:GCGRSF_Sequence_Format:2007-12-10T16-44-28Z
subclass of: Sequence_alignment_report

EvocID
comment: An identifier in the Evoc Ontology
publisher: eva.mpg.de
identifier: urn:lsid:biomoby.org:objectclass:EvocID:2001-09-21T16-00-00Z
hasa: EvocID aWQ%3D%0A
subclass of: Object

EvocID aWQ%3D%0A
type: String
article name: id

psiblast_input_alignment
comment: Input Alignment File for PSI-BLAST Restart (-B option)
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:psiblast_input_alignment:2001-09-21T16-00-00Z
subclass of: Alignment

Alignment
comment: Sequence alignment
publisher: genopole.toulouse.inra.fr
identifier: urn:lsid:biomoby.org:objectclass:Alignment:2001-09-21T16-00-00Z
subclass of: text-formatted

MatrixString
comment: MatrixString object.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:MatrixString:2006-03-21T11-52-31Z
subclass of: Matrix
hasa: MatrixString S2V5%0A
has: MatrixString QXJyYXk%3D%0A

Matrix
comment: Matrix object.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Matrix:2006-03-21T11-48-31Z
subclass of: Object

MatrixString S2V5%0A
type: Integer
article name: Key

ArrayString
comment: ArrayString object.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:ArrayString:2006-03-21T11-52-20Z
subclass of: Array
hasa: ArrayString S2V5%0A
has: ArrayString RWxlbWVudA%3D%3D%0A

ArrayString S2V5%0A
type: Integer
article name: Key

ElementString
comment: ElementString object for string arrays and matrixes.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:ElementString:2006-03-21T11-52-03Z
subclass of: Element
hasa: ElementString S2V5%0A
hasa: ElementString VmFsdWU%3D%0A

ElementString S2V5%0A
type: Integer
article name: Key

ElementString VmFsdWU%3D%0A
type: String
article name: Value

ArrayString RWxlbWVudA%3D%3D%0A
type: ElementString
article name: Element

MatrixString QXJyYXk%3D%0A
type: ArrayString
article name: Array

GCP_MapDistribution
comment: See Demeter MapDistribution model narratives for guidance. The MOBY specification of this model uses GCP_SimpleFeature objects to specify the map position. The name attribute can be used as the key, the valueString as the value of the data map.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MapDistribution:2007-06-17T01-48-47Z
subclass of: GCP_MapPosition
has: GCP MapDistribution ZGlzdHJpYnV0aW9u%0A

GCP MapDistribution ZGlzdHJpYnV0aW9u%0A
type: GCP_SimpleIdentifier
article name: distribution

GCP_MultipleSequenceAlignment
comment: A GCP_MultipleSequenceAlignment inherits from GCP_CorrelatedLinkageMapSet to align several sequences to one another using bioinformatics analysis (e.g. ClustalW).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MultipleSequenceAlignment:2007-06-17T05-59-36Z
subclass of: GCP_CorrelatedLinkageMapSet
has: GCP MultipleSequenceAlignment c2VxdWVuY2Vz%0A

GCP MultipleSequenceAlignment c2VxdWVuY2Vz%0A
type: GCP_SimpleIdentifier
article name: sequences

GazInput
comment: Gazeteer input
publisher: cipotato.org
identifier: urn:lsid:biomoby.org:objectclass:GazInput:2001-09-21T16-00-00Z
hasa: GazInput aW5wdXRTdHJpbmc%3D%0A
hasa: GazInput ZXhhY3RNYXRjaA%3D%3D%0A
hasa: GazInput a2V5%0A
subclass of: Object

GazInput aW5wdXRTdHJpbmc%3D%0A
type: String
article name: inputString

GazInput ZXhhY3RNYXRjaA%3D%3D%0A
type: String
article name: exactMatch

GazInput a2V5%0A
type: String
article name: key

StructureFragment
comment: Information on structure fragment boundaries
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:StructureFragment:2006-10-05T09-47-10Z
hasa: StructureFragment TnVtUmVzaWR1ZXM%3D%0A
subclass of: StructureBoundaries

StructureFragment TnVtUmVzaWR1ZXM%3D%0A
type: Integer
article name: NumResidues

StructureBoundaries
comment: Information on structure boundaries of segments, fragments, domains, etc.
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:StructureBoundaries:2006-10-05T09-10-02Z
subclass of: Annotation
hasa: StructureBoundaries Q2hhaW4%3D%0A

Annotation
comment: Sequence Annotation
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:Annotation:2006-10-05T09-07-44Z
hasa: Annotation RW5k%0A
hasa: Annotation U3RhcnQ%3D%0A
subclass of: Object

Annotation RW5k%0A
type: Integer
article name: End

Annotation U3RhcnQ%3D%0A
type: Integer
article name: Start

StructureBoundaries Q2hhaW4%3D%0A
type: String
article name: Chain

IRFGCDemo_PIDList
comment: Phenotype IDs and corresponding GID list (IRFGC Demo)
publisher: www.iris.irri.org
identifier: urn:lsid:biomoby.org:objectclass:IRFGCDemo_PIDList:2001-09-21T16-00-00Z
subclass of: Object
hasa: IRFGCDemo PIDList R0lEcw%3D%3D%0A

IRFGCDemo PIDList R0lEcw%3D%3D%0A
type: Object
article name: GIDs

Distance_Matrix
comment: Formalisation of a distance matrix
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:Distance_Matrix:2006-03-22T14-25-20Z
subclass of: MatrixFloat
hasa: Distance Matrix TGFiZWw%3D%0A

MatrixFloat
comment: MatrixFloat object.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:MatrixFloat:2006-03-21T11-50-45Z
subclass of: Matrix
hasa: MatrixFloat S2V5%0A
has: MatrixFloat QXJyYXk%3D%0A

MatrixFloat S2V5%0A
type: Integer
article name: Key

MatrixFloat QXJyYXk%3D%0A
type: ArrayFloat
article name: Array

Distance Matrix TGFiZWw%3D%0A
type: MatrixString
article name: Label

NCBI_Blast_XML
comment: XML formatted NCBI Blast report
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:NCBI_Blast_XML:2001-09-21T16-00-00Z
subclass of: text-xml

LongitudeDecimal
comment: Maps to Darwin Core 2: Longitude. Express in decimal degrees
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:LongitudeDecimal:2001-09-21T16-00-00Z
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#LongitudeDecimal_TG9uZ2l0dWRlRGVjaW1hbA%3D%3D%0A
type: Float
article name: LongitudeDecimal

GeneAccessionList
comment: List of gene accessions
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:GeneAccessionList:2001-09-21T16-00-00Z
subclass of: text-plain

SpecimenUnit
comment: A container for all data referring to a unit (specimen or observation record)
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:SpecimenUnit:2001-09-21T16-00-00Z
subclass of: Object
hasa: SpecimenUnit UmVjb3JkQmFzaXM%3D%0A
hasa: SpecimenUnit R2VuZXJpY1NlcXVlbmNl%0A
has: SpecimenUnit SWRlbnRpZmljYXRpb24%3D%0A

RecordBasis
comment: An indication of what the unit record describes. Note that the element SourceReference provides for the case that the record is based on a publication.
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:RecordBasis:2001-09-21T16-00-00Z
hasa: RecordBasis UmVjb3JkQmFzaXM%3D%0A
subclass of: Object

RecordBasis UmVjb3JkQmFzaXM%3D%0A
type: String
article name: RecordBasis

SpecimenUnit UmVjb3JkQmFzaXM%3D%0A
type: RecordBasis
article name: RecordBasis

GatheringSite
comment: Elements describing the field events that created the unit and their location.
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:GatheringSite:2001-09-21T16-00-00Z
subclass of: Object
hasa: GatheringSite TG9jYWxpdHk%3D%0A
hasa: GatheringSite Q29vcmRpbmF0ZXM%3D%0A

Locality
comment: Original locality data as appearing on a label or in an original entry.
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:Locality:2001-09-21T16-00-00Z
hasa: Locality TG9jYWxpdHlUZXh0%0A
subclass of: Object

Locality TG9jYWxpdHlUZXh0%0A
type: String
article name: LocalityText

GatheringSite TG9jYWxpdHk%3D%0A
type: Locality
article name: Locality

Coordinates
comment: Element that allows the recording of the latitude and longitude of a recording or collecting position.
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:Coordinates:2001-09-21T16-00-00Z
subclass of: Object
hasa: Coordinates Q29vcmRpbmF0ZXNUZXh0%0A
hasa: Coordinates TGF0aXR1ZGVEZWNpbWFs%0A
hasa: Coordinates U3BhdGlhbERhdHVt%0A

Coordinates Q29vcmRpbmF0ZXNUZXh0%0A
type: String
article name: CoordinatesText

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Coordinates_TG9uZ2l0dWRlRGVjaW1hbA%3D%3D%0A
type: LongitudeDecimal
article name: LongitudeDecimal

LatitudeDecimal
comment: Maps to Darwin Core 2: Latitude. Express in decimal degrees
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:LatitudeDecimal:2001-09-21T16-00-00Z
subclass of: Object
hasa: LatitudeDecimal TGF0aXR1ZGVEZWNpbWFs%0A

LatitudeDecimal TGF0aXR1ZGVEZWNpbWFs%0A
type: Float
article name: LatitudeDecimal

Coordinates TGF0aXR1ZGVEZWNpbWFs%0A
type: LatitudeDecimal
article name: LatitudeDecimal

SpatialDatum
comment: Mathematical surface on which the mapping and coordinate system used for the geocodes of the record are based
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:SpatialDatum:2001-09-21T16-00-00Z
subclass of: Object
hasa: SpatialDatum U3BhdGlhbERhdHVt%0A

SpatialDatum U3BhdGlhbERhdHVt%0A
type: String
article name: SpatialDatum

Coordinates U3BhdGlhbERhdHVt%0A
type: SpatialDatum
article name: SpatialDatum

GatheringSite Q29vcmRpbmF0ZXM%3D%0A
type: Coordinates
article name: Coordinates

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SpecimenUnit_R2F0aGVyaW5nU2l0ZQ%3D%3D%0A
type: GatheringSite
article name: GatheringSite

SpecimenUnit R2VuZXJpY1NlcXVlbmNl%0A
type: GenericSequence
article name: GenericSequence

Identification
comment: In cases where more than one name applies to a single unit, several identifications should be formed and flagged as preferred. Relationships between differently identified sub-units of the unit can be specified by means of the IdentificationRole.
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:Identification:2001-09-21T16-00-00Z
subclass of: Object
has: Identification VGF4b25JZGVudGlmaWVk%0A

DateTime
comment: a date or time in ISO-8601 format
publisher: openinformatics.com
identifier: urn:lsid:biomoby.org:objectclass:DateTime:2001-09-21T16-00-00Z
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Identification_SWRlbnRpZmljYXRpb25EYXRl%0A
type: DateTime
article name: IdentificationDate

TaxonName
comment: GBIF - Concatenated scientific name, preferrably formed in accordance with a Code of Nomenclature, i. e. a monomial, bionomial, or trinomial plus author(s) or author team(s) and - where relevant - year, or the name of a cultivar or cultivar group, or a hybrid formula, as fully as possible.
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:TaxonName:2001-09-21T16-00-00Z
subclass of: Object
has: TaxonName VGF4b25OYW1l%0A
hasa: TaxonName Rmlyc3RFcGl0aGV0%0A
hasa: TaxonName R2VudXM%3D%0A

TaxonName VGF4b25OYW1l%0A
type: String
article name: TaxonName

FirstEpithet
comment: GBIF - The first epithet in a botanical name combination (species epithet or the epithet of the subdivision of a genus.
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:FirstEpithet:2001-09-21T16-00-00Z
subclass of: Object
hasa: FirstEpithet Rmlyc3RFcGl0aGV0%0A

FirstEpithet Rmlyc3RFcGl0aGV0%0A
type: String
article name: FirstEpithet

TaxonName Rmlyc3RFcGl0aGV0%0A
type: FirstEpithet
article name: FirstEpithet

Genus
comment: GBIF test - Genus
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:Genus:2001-09-21T16-00-00Z
subclass of: Object

TaxonName R2VudXM%3D%0A
type: Genus
article name: Genus

InfraspecificEpithet
comment: GBIF - The final epithet of a botanical name of infraspecific rank. AppInfo Nothing found.
publisher: www.mncn.csic.es
identifier: urn:lsid:biomoby.org:objectclass:InfraspecificEpithet:2001-09-21T16-00-00Z
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InfraspecificEpithet_SW5mcmFzcGVjaWZpY0VwaXRoZXQ%3D%0A
type: String
article name: InfraspecificEpithet

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#TaxonName_SW5mcmFzcGVjaWZpY0VwaXRoZXQ%3D%0A
type: InfraspecificEpithet
article name: InfraspecificEpithet

Identification VGF4b25JZGVudGlmaWVk%0A
type: TaxonName
article name: TaxonIdentified

SpecimenUnit SWRlbnRpZmljYXRpb24%3D%0A
type: Identification
article name: Identification

Phylip_matrix_Text
comment: distance matrix.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Phylip_matrix_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

GCP_OntologyTerm
comment: A fully documented GCP_OntologyTerm object is a simply specialised kind of GCP_Entity documenting an abstract concept, belonging to a GCP hosted ontology (itself identified by a GCP_SimpleIdentifier). The name, description and namespace attributes of the superclass GCP_SimpleIdentifier and GCP_Identifier serve as the concept name, definition and parent ontology, respectively. The GCP_Entity synonyms covers all concept alias names and database cross references. Of course, since GCP_OntologyTerm is a kind of GCP_Entity, it may also have a primary_citation supporting its definition, plus other pertinent annotation. *Note: Generally speaking, MOBY services only need to to use GCP_SimpleIdentifier references to GCP_OntologyTerm instances, not the full GCP_OntologyTerm, except when the full ontology term definition (GCP_OntologyTerm) is requested by the end user for display in their application.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_OntologyTerm:2006-11-28T09-27-57Z
subclass of: GCP_Entity

MappedFeature
comment: Sequence mapped to a feature of a sequence database
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:MappedFeature:2006-06-27T14-04-15Z
hasa: MappedFeature T3JpZW50YXRpb24%3D%0A
hasa: MappedFeature TWlzbWF0Y2hlcw%3D%3D%0A
hasa: MappedFeature VGFyZ2V0U2VxdWVuY2U%3D%0A
subclass of: GenericFeature
hasa: MappedFeature U2VxREI%3D%0A

MappedFeature T3JpZW50YXRpb24%3D%0A
type: String
article name: Orientation

MappedFeature TWlzbWF0Y2hlcw%3D%3D%0A
type: Integer
article name: Mismatches

MappedFeature VGFyZ2V0U2VxdWVuY2U%3D%0A
type: String
article name: TargetSequence

GenericFeature
comment: Generic feature in a sequence database with start and end positions
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:GenericFeature:2006-06-27T13-55-21Z
hasa: GenericFeature RmVhdHVyZQ%3D%3D%0A
subclass of: Object
hasa: GenericFeature U3RhcnQ%3D%0A
hasa: GenericFeature RW5k%0A

GenericFeature RmVhdHVyZQ%3D%3D%0A
type: String
article name: Feature

GenericFeature U3RhcnQ%3D%0A
type: Integer
article name: Start

GenericFeature RW5k%0A
type: Integer
article name: End

MappedFeature U2VxREI%3D%0A
type: String
article name: SeqDB

text_html
comment: report in HTML format
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:text_html:2006-03-22T11-03-31Z
subclass of: text_plain

Pepstats_Text
comment: runEMBOSSPepstats output.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Pepstats_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

FASTA_NA_multi
comment: Nucleic multiple FASTA entries
publisher: genopole.toulouse.inra.fr
identifier: urn:lsid:biomoby.org:objectclass:FASTA_NA_multi:2001-09-21T16-00-00Z
subclass of: FASTA_NA

FASTA_NA
comment: NA sequence in FASTA format
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:FASTA_NA:2001-09-21T16-00-00Z
subclass of: FASTA

TaxonScientificName
comment: Full taxon name.
publisher: skofic.net
identifier: urn:lsid:biomoby.org:objectclass:TaxonScientificName:2001-09-21T16-00-00Z
subclass of: Object
hasa: TaxonScientificName TmFtZQ%3D%3D%0A

TaxonScientificName TmFtZQ%3D%3D%0A
type: String
article name: Name

GCP_BiblioReference
comment: Aside from the MOBY modeling considerations noted above in the introduction, GCP_BiblioReference is generally as per the corresponding Demeter model except for the following attributes.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_BiblioReference:2007-06-06T01-07-40Z
subclass of: GCP_SimpleCitation
hasa: GCP BiblioReference Zm9ybWF0%0A
hasa: GCP BiblioReference bGFuZ3VhZ2U%3D%0A
hasa: GCP BiblioReference cHVibGlzaGVy%0A
hasa: GCP BiblioReference bWV0YURhdGE%3D%0A
has: GCP BiblioReference YXV0aG9ycw%3D%3D%0A
has: GCP BiblioReference Y29udHJpYnV0b3Jz%0A
has: GCP BiblioReference aW5kZXhpbmdz%0A
has: GCP BiblioReference Y29udGVudA%3D%3D%0A

GCP_SimpleCitation
comment: GCP_SimpleCitation is generally as per the Demeter model except that the date, journal source and author list attributes are modeled as simple MOBY Strings.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_SimpleCitation:2007-06-03T17-54-30Z
hasa: GCP SimpleCitation c291cmNl%0A
hasa: GCP SimpleCitation ZGF0ZQ%3D%3D%0A
subclass of: GCP_SimpleFeature

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_SimpleCitation_YXV0aG9yTGlzdA%3D%3D%0A
type: String
article name: authorList

GCP SimpleCitation c291cmNl%0A
type: String
article name: source

GCP SimpleCitation ZGF0ZQ%3D%3D%0A
type: String
article name: date

GCP BiblioReference Zm9ybWF0%0A
type: GCP_SimpleIdentifier
article name: format

GCP BiblioReference bGFuZ3VhZ2U%3D%0A
type: GCP_SimpleIdentifier
article name: language

GCP BiblioReference cHVibGlzaGVy%0A
type: GCP_SimpleIdentifier
article name: publisher

GCP BiblioReference bWV0YURhdGE%3D%0A
type: GCP_SimpleFeature
article name: metaData

GCP BiblioReference YXV0aG9ycw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: authors

GCP BiblioReference Y29udHJpYnV0b3Jz%0A
type: GCP_SimpleIdentifier
article name: contributors

GCP BiblioReference aW5kZXhpbmdz%0A
type: Object
article name: indexings

GCP BiblioReference Y29udGVudA%3D%3D%0A
type: GCP_SimpleFeature
article name: content

b64_Encoded_PNG
comment: Base 64 encoded PNG-format image
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:b64_Encoded_PNG:2001-09-21T16-00-00Z
subclass of: text-base64

GCP_CorrelatedMapFeatureSet
comment: Used for comparative mapping, a CorrelatedMapSet aggregates a set of Map objects that can be related to one another by a common set of MapFeatures, that are themselves documented in a CorrelatedMapFeatureSet.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_CorrelatedMapFeatureSet:2007-06-17T01-22-51Z
subclass of: Object
has: GCP CorrelatedMapFeatureSet bWFwRmVhdHVyZXM%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_CorrelatedMapFeatureSet_Y29ycmVsYXRlZE1hcA%3D%3D%0A
type: GCP_SimpleIdentifier
article name: correlatedMap

GCP CorrelatedMapFeatureSet bWFwRmVhdHVyZXM%3D%0A
type: GCP_SimpleIdentifier
article name: mapFeatures

GCP_GenomicFeatureAssay
comment: Associates GCP_GenomicFeatureDetector in a many-to-many relationship to GCP_GenomicFeatureDetectionProtocol instances, for genotyping experimental assays. This allows reuse of protocols for different detectors (and several protocols being applied to one specified detector). See Demeter genotype model for further guidance.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GenomicFeatureAssay :2007-06-13T13-19-34Z
subclass of: GCP_Entity
hasa: GCP GenomicFeatureAssay ZGV0ZWN0b3I%3D%0A
hasa: GCP GenomicFeatureAssay cHJvdG9jb2w%3D%0A

GCP GenomicFeatureAssay ZGV0ZWN0b3I%3D%0A
type: GCP_SimpleIdentifier
article name: detector

GCP GenomicFeatureAssay cHJvdG9jb2w%3D%0A
type: GCP_SimpleIdentifier
article name: protocol

Newick_Text
comment: phylogenetic tree in Newick format.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Newick_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

GCP_EmbeddedMap
comment: The GCP_EmbeddedMap is a kind of GCP_MapFeature that encapsulates an sourceMap Map for positioning onto another parent Map.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_EmbeddedMap:2007-06-17T01-07-08Z
subclass of: GCP_MapFeature
hasa: GCP EmbeddedMap c291cmNlTWFw%0A

GCP EmbeddedMap c291cmNlTWFw%0A
type: GCP_SimpleIdentifier
article name: sourceMap

Study
comment: ICIS Germplasm List with a particular Property
publisher: www.iris.irri.org
identifier: urn:lsid:biomoby.org:objectclass:Study:2001-09-21T16-00-00Z
hasa: Study c3R1ZHlfbmFtZQ%3D%3D%0A
hasa: Study c3R1ZHlfaWQ%3D%0A
hasa: Study c3R1ZHlfZGVzYw%3D%3D%0A
subclass of: Object

Study c3R1ZHlfbmFtZQ%3D%3D%0A
type: String
article name: study_name

Study c3R1ZHlfaWQ%3D%0A
type: Integer
article name: study_id

Study c3R1ZHlfZGVzYw%3D%3D%0A
type: String
article name: study_desc

AvailableMaterial
comment: Object containing information about available material
publisher: gabi.rzpd.de
identifier: urn:lsid:biomoby.org:objectclass:AvailableMaterial:2006-06-28T08-38-28Z
subclass of: Object
hasa: AvailableMaterial VXJs%0A

AvailableMaterial VXJs%0A
type: String
article name: Url

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#AvailableMaterial_QWRkaXRpb25hbEluZm9ybWF0aW9u%0A
type: String
article name: AdditionalInformation

GCP_GenomicFeatureDetector
comment: GCP_GenomicFeatures may be detected by a GenomicFeatureAssay that uses a specific set of genetic information embodied in experimental reagents or computation inputs. The object describing this specific set of biological information is modeled by the GCP_GenomicFeatureDetector data type, which inherits its full documentation capacity from GCP_Entity. A GCP_GenomicFeatureDetector can report the assays to which it is applied, the genomicFeatures it detects and their characterized molecular detectedVariants. All of these are dereferenced by GCP_SimpleIdentifiers.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GenomicFeatureDetector:2007-06-13T13-17-45Z
has: GCP GenomicFeatureDetector YXNzYXlz%0A
subclass of: GCP_Entity

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GenomicFeatureDetector_ZGV0ZWN0ZWRWYXJpYW50cw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: detectedVariants

GCP GenomicFeatureDetector YXNzYXlz%0A
type: GCP_SimpleIdentifier
article name: assays

PredictedSNP
comment: Predicted SNP with base change and confidence
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:PredictedSNP:2006-06-27T14-35-08Z
subclass of: GenericSNP
hasa: PredictedSNP YmFzZV9yZWY%3D%0A
hasa: PredictedSNP YmFzZV92YXI%3D%0A
hasa: PredictedSNP Q29uZmlkZW5jZQ%3D%3D%0A

GenericSNP
comment: Generic SNP with position and strain
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:GenericSNP:2006-06-27T14-26-28Z
hasa: GenericSNP UG9zaXRpb24%3D%0A
subclass of: Object
hasa: GenericSNP U3RyYWlu%0A

GenericSNP UG9zaXRpb24%3D%0A
type: Position
article name: Position

GenericSNP U3RyYWlu%0A
type: String
article name: Strain

PredictedSNP YmFzZV9yZWY%3D%0A
type: String
article name: base_ref

PredictedSNP YmFzZV92YXI%3D%0A
type: String
article name: base_var

PredictedSNP Q29uZmlkZW5jZQ%3D%3D%0A
type: Integer
article name: Confidence

clustal-msf-formatted-text
comment: Clustalw MSF formatted text
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:clustal-msf-formatted-text:2001-09-21T16-00-00Z
subclass of: text-formatted

mmCIF-Text
comment: PDB report in mmCIF format
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:mmCIF-Text:2001-09-21T16-00-00Z
subclass of: text-formatted

clustal-aln-formatted-text
comment: Clustalw aln format
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:clustal-aln-formatted-text:2001-09-21T16-00-00Z
subclass of: text-formatted

NCBI_Blast_XML_Gif_Map
comment: XML formatted NCBI Blast report with a clickable graphical display of the hits
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:NCBI_Blast_XML_Gif_Map:2001-09-21T16-00-00Z
hasa: NCBI Blast XML Gif Map YXJlYU1hcA%3D%3D%0A
subclass of: NCBI_Blast_XML_Gif

NCBI Blast XML Gif Map YXJlYU1hcA%3D%3D%0A
type: text-html
article name: areaMap

NCBI_Blast_XML_Gif
comment: XML formatted NCBI Blast report with a graphical display of the hits
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:NCBI_Blast_XML_Gif:2001-09-21T16-00-00Z
hasa: NCBI Blast XML Gif aGl0R3JhcGg%3D%0A
subclass of: NCBI_Blast_XML

b64_encoded_gif
comment: Base 64 encoded GIF-format image
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:b64_encoded_gif:2001-09-21T16-00-00Z
subclass of: text-base64

NCBI Blast XML Gif aGl0R3JhcGg%3D%0A
type: b64_encoded_gif
article name: hitGraph

BasicClone_test
comment: blub
publisher: gabipd.org
identifier: urn:lsid:biomoby.org:objectclass:BasicClone_test:2008-02-29T11-26-45Z
hasa: BasicClone test U2VxdWVuY2U%3D%0A
subclass of: Object
hasa: BasicClone test S2luZA%3D%3D%0A
hasa: BasicClone test QWNjZXNzUGFnZVVybA%3D%3D%0A
hasa: BasicClone test TmFtZQ%3D%3D%0A

NucleotideSequence
comment: Lightweight representation of any type of nucleotide sequence (DNA, RNA, etc)
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:NucleotideSequence:2001-09-21T16-00-00Z
subclass of: GenericSequence

BasicClone test U2VxdWVuY2U%3D%0A
type: NucleotideSequence
article name: Sequence

BasicClone test S2luZA%3D%3D%0A
type: String
article name: Kind

BasicClone test QWNjZXNzUGFnZVVybA%3D%3D%0A
type: String
article name: AccessPageUrl

BasicClone test TmFtZQ%3D%3D%0A
type: String
article name: Name

MicroArrayData_Text
comment: Micro-array data in text format representing gene expression patterns. Each line must have the gene name and the expression values and the expression values for each condition. All the data items must be separated by tabulators
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:MicroArrayData_Text:2006-03-27T12-19-28Z
subclass of: text_formatted

GCP_GenomicFeatureVariant
comment: MOBY data type for a GCP_DetectedVariant that can be unambiguously associated with a specified GCP_GenomicFeature. See Demeter genotype model for further guidance.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GenomicFeatureVariant:2007-06-13T13-24-26Z
subclass of: GCP_DetectedVariant

GCP_DetectedVariant
comment: MOBY data type for a Demeter MolecularVariant which is generally detected by a GCP_GenomicFeatureDetector but which cannot generally, without further analysis and interpretation, be unambiguously associated with a specified GenomicFeature. applied. See Demeter genotype model for further guidance.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_DetectedVariant:2007-06-13T13-08-36Z
subclass of: GCP_MolecularVariant
hasa: GCP DetectedVariant ZGV0ZWN0b3I%3D%0A

GCP_MolecularVariant
comment: The GCP_MolecularVariant data type documents the (usually polymorphic) genetic content of GCP_GenomicFeature instances which is the context of the variant. Note that if the measured content (variation) is not resolved to a specified GCP_GenomicFeature detected by a GCP_GenomicFeatureDetector, then the context of the variant can simply be the GCP_GenomicFeatureDetector itself (i.e. the GCP_MolecularVariant is a detectedVariant of the GCP_GenomicFeatureDetector). GCP_MolecularVariant inherits its full documentation capacity from GCP_Entity.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MolecularVariant:2006-11-28T09-27-28Z
subclass of: GCP_Entity
hasa: GCP MolecularVariant Y29udGV4dA%3D%3D%0A

GCP MolecularVariant Y29udGV4dA%3D%3D%0A
type: GCP_SimpleIdentifier
article name: context

GCP DetectedVariant ZGV0ZWN0b3I%3D%0A
type: GCP_SimpleIdentifier
article name: detector

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GenomicFeatureVariant_Z2Vub21pY0ZlYXR1cmU%3D%0A
type: GCP_SimpleIdentifier
article name: genomicFeature

CodingSNP
comment: SNPs in coding region with codons and aminoacids
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:CodingSNP:2006-06-27T14-31-56Z
subclass of: GenericSNP
hasa: CodingSNP Y29kb25fcmVm%0A
hasa: CodingSNP YWFfcmVm%0A
hasa: CodingSNP Y29kb25fdmFy%0A
hasa: CodingSNP YWFfdmFy%0A
hasa: CodingSNP YWFfcG9z%0A
hasa: CodingSNP YWFfY2hhbmdl%0A

CodingSNP Y29kb25fcmVm%0A
type: String
article name: codon_ref

CodingSNP YWFfcmVm%0A
type: String
article name: aa_ref

CodingSNP Y29kb25fdmFy%0A
type: String
article name: codon_var

CodingSNP YWFfdmFy%0A
type: String
article name: aa_var

CodingSNP YWFfcG9z%0A
type: Integer
article name: aa_pos

CodingSNP YWFfY2hhbmdl%0A
type: Boolean
article name: aa_change

CodonUsageTable_Text
comment: Codon usage table.
publisher: inb.bsc.es
identifier: urn:lsid:biomoby.org:objectclass:CodonUsageTable_Text:2006-05-30T04-58-15Z
subclass of: text_formatted

Global_Keyword
comment: A namespace for keywords; one keyword only
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:Global_Keyword:2001-09-21T16-00-00Z
subclass of: Object

M_GIS
comment: GIS elements in the MGIS database composed of latitude, logitude and altitude
publisher: bioinfo.inibap.org
identifier: urn:lsid:biomoby.org:objectclass:M_GIS:2001-09-21T16-00-00Z
subclass of: Object
hasa: M GIS bG9uZ2l0dWRl%0A
hasa: M GIS bGF0aXR1ZGU%3D%0A
hasa: M GIS YWx0aXR1ZGU%3D%0A

M GIS bG9uZ2l0dWRl%0A
type: String
article name: longitude

M GIS bGF0aXR1ZGU%3D%0A
type: String
article name: latitude

M GIS YWx0aXR1ZGU%3D%0A
type: String
article name: altitude

GCP_Contact
comment: A GCP_Contact is a GCP_Person with a particular affiliation to a particular GCP_Organization. Any given GCP_Person may play the role of being a specific GCP_Contact for different organizations, in distinct operational and temporal contexts of the system.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Contact:2007-06-06T00-50-28Z
subclass of: GCP_Person
hasa: GCP Contact YWZmaWxpYXRpb24%3D%0A

GCP_Person
comment: A GCP_Person is a GCP_LegalEntity semantically constrained to represent a single human being in the system.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Person:2007-06-06T00-48-33Z
subclass of: GCP_LegalEntity

GCP Contact YWZmaWxpYXRpb24%3D%0A
type: GCP_Organization
article name: affiliation

TargetP_result
comment: The results of a TargetP (http://www.cbs.dtu.dk/services/TargetP/) prediction
publisher: atidb.org
identifier: urn:lsid:biomoby.org:objectclass:TargetP_result:2001-09-21T16-00-00Z
subclass of: CompartmentPrediction

CompartmentPrediction
comment: The results of a compartment prediction program e.g. TargetP or Predotar
publisher: atidb.org
identifier: urn:lsid:biomoby.org:objectclass:CompartmentPrediction:2001-09-21T16-00-00Z
subclass of: Object
hasa: CompartmentPrediction Y19zY29yZQ%3D%3D%0A
hasa: CompartmentPrediction bV9zY29yZQ%3D%3D%0A
hasa: CompartmentPrediction b19zY29yZQ%3D%3D%0A
hasa: CompartmentPrediction c19zY29yZQ%3D%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#CompartmentPrediction_Y29tcGFydG1lbnQ%3D%0A
type: String
article name: compartment

CompartmentPrediction Y19zY29yZQ%3D%3D%0A
type: Float
article name: c_score

CompartmentPrediction bV9zY29yZQ%3D%3D%0A
type: Float
article name: m_score

CompartmentPrediction b19zY29yZQ%3D%3D%0A
type: Float
article name: o_score

CompartmentPrediction c19zY29yZQ%3D%3D%0A
type: Float
article name: s_score

XYData_Text
comment: Text in columns (used to draw plots, etc.).
publisher: inb.bsc.es
identifier: urn:lsid:biomoby.org:objectclass:XYData_Text:2006-08-14T08-56-56Z
subclass of: text_formatted

SchematikonStructureAnnotation
comment: DSSP, STRIDE, and PROMOTIF annotation for a Schematikon structure segment / structure motif
publisher: schematikon.org
identifier: urn:lsid:biomoby.org:objectclass:SchematikonStructureAnnotation:2001-09-21T16-00-00Z
subclass of: Object
hasa: SchematikonStructureAnnotation RFNTUA%3D%3D%0A
hasa: SchematikonStructureAnnotation U1RSSURF%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SchematikonStructureAnnotation_UFJPTU9USUYgZ2FtbWEtdHVybg%3D%3D%0A
type: String
article name: PROMOTIF gamma-turn

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SchematikonStructureAnnotation_UFJPTU9USUYgYmV0YS10dXJu%0A
type: String
article name: PROMOTIF beta-turn

SchematikonStructureAnnotation RFNTUA%3D%3D%0A
type: String
article name: DSSP

SchematikonStructureAnnotation U1RSSURF%0A
type: String
article name: STRIDE

snp_genotype
comment: Snp Genotypes
publisher: www.hapmap.org
identifier: urn:lsid:biomoby.org:objectclass:snp_genotype:2001-09-21T16-00-00Z
hasa: snp genotype YWxsZWxlMQ%3D%3D%0A
hasa: snp genotype YWxsZWxlMg%3D%3D%0A

snp_allele
comment: Snp Allele
publisher: www.hapmap.org
identifier: urn:lsid:biomoby.org:objectclass:snp_allele:2001-09-21T16-00-00Z
hasa: snp allele

DNASequence
comment: Lightweight representation a DNA sequence
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:DNASequence:2001-09-21T16-00-00Z
subclass of: NucleotideSequence

snp genotype YWxsZWxlMQ%3D%3D%0A
type: snp_allele
article name: allele1

snp genotype YWxsZWxlMg%3D%3D%0A
type: snp_allele
article name: allele2

GCP_Evidence
comment: An evidence indicates reliability of a feature or simply documents its authoritative origin. The core of an evidence is its source which can be anything (because it is an Entity). Usual evidence sources are BiblioReferences, Studies and OntologyTerms. GCP_Evidence records its "supporting source" directly in the form of the GCP_SimpleIdentifier from which it inherits. In this case, the MOBY namespace should hint at the type of object that is the supporting source (e.g. NCBI_Pubmed" probably indicates a bibliographic citation; IRIS_Study probably means ICIS Study data in the International Rice Information System) such that the end user can retrieve the source document or data type with another pertinent web service call. - curator. The person who keeps the data related to evidence. This is modeled as a GCP_SimpleIdentifier identifying a GCP_Person - evidenceCode. A GCP_SimpleIdentifier identifying a suitable GCP_OntologyTerm (generally, derived from the Gene Ontology evidence code ontology). - score. Indicator of the reliability of the evidence (which is usually a numeric value between 0 and 1, but also other types of Value are allowed - e.g. an ontology term value)
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Evidence:2006-11-28T08-20-43Z
hasa: GCP Evidence ZXZpZGVuY2VDb2Rl%0A
hasa: GCP Evidence c2NvcmU%3D%0A
subclass of: GCP_SimpleIdentifier
hasa: GCP Evidence Y3VyYXRvcg%3D%3D%0A

GCP Evidence ZXZpZGVuY2VDb2Rl%0A
type: GCP_SimpleIdentifier
article name: evidenceCode

GCP Evidence c2NvcmU%3D%0A
type: String
article name: score

GCP Evidence Y3VyYXRvcg%3D%3D%0A
type: GCP_SimpleIdentifier
article name: curator

GCP_FeatureSet
comment: A GCP_FeatureSet inherits most of its article names (attributes) from GCP_SimpleFeature but also includes a MOBY:Collection under the article name features which is itself, a set of GCP_SimpleFeature objects.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_FeatureSet:2007-06-02T21-49-48Z
subclass of: GCP_SimpleFeature
has: GCP FeatureSet ZmVhdHVyZXM%3D%0A

GCP FeatureSet ZmVhdHVyZXM%3D%0A
type: GCP_SimpleFeature
article name: features

IG-Sequence-Format
comment: An example sequence in IG format is: ; comment ; comment U03518 AACCTGCGGAAGGATCATTACCGAGTGCGGGTCCTTTGGGCCCAACCTCCCATCCGTGTCTATTGTACCC TGTTGCTTCGGCGGGCCCGCCGCTTGTCGGCCGCCGGGGGGGCGCCTCTGCCCCCCGGGCCCGTGCCCGC CGGAGACCCCAACACGAACACTGTCTGAAAGCGTGCAGTCTGAGTTGATTGAATGCAATCAGTTAAAACT TTCAACAATGGATCTCTTGGTTCCGGC1
publisher: bibiserv.techfak.uni-bielefeld.de
identifier: urn:lsid:biomoby.org:objectclass:IG-Sequence-Format:2007-12-10T21-06-27Z
subclass of: Sequence_alignment_report

embl-flatfile
comment: a formatted plaintext EMBL flatfile
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:embl-flatfile:2001-09-21T16-00-00Z
subclass of: text-formatted

GCP_GenomicMapStudy
comment: GCP_GenotypeMapStudy is a kind of GCP_GenotypeStudy conducted against mappedGermplasm (which is a GCP_GermplasmSet retrieved by a GCP_SimpleIdentifier) that generates a set of linkageMaps (identified by GCP_SimpleIdentifiers but whose details are fully recorded in GCP_LinkageMap objects).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GenomicMapStudy:2007-06-17T05-02-09Z
subclass of: GCP_GenotypeStudy

GCP_GenotypeStudy
comment: A GCP_GenotypeStudy is a kind of LaboratoryStudy that applies a set of markers (which is a GCP_MolecularVariantSet identified by a GCP_SimpleIdentifier) to analyze a set of samples (which is a GCP_GermplasmSet of GCP_BiologicalSamples).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GenotypeStudy:2007-06-17T04-51-29Z
subclass of: GCP_LaboratoryGermplasmStudy
hasa: GCP GenotypeStudy bWFya2Vycw%3D%3D%0A

GCP_LaboratoryGermplasmStudy
comment: A GCP_LaboratoryGermplasmStudy captures laboratory experimental data about its samples (which are GCP_BiologicalSample objects managed in a GCP_GermplasmSet which is dereferenced using a GCP_SimpleIdentifier).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_LaboratoryGermplasmStudy:2007-06-17T04-21-45Z
subclass of: GCP_GermplasmStudy
hasa: GCP LaboratoryGermplasmStudy c2FtcGxlcw%3D%3D%0A

GCP_GermplasmStudy
comment: GCP_GermplasmStudy is a kind of Study that characterises a GCP_GermplasmSet of germplasm (identified for retrieval by a GCP_SimpleIdentifier) and documenting growthConditions and treatments as MOBY:Collections of GCP_SimpleFeature objects (with feature types defined by a suitable ontology).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GermplasmStudy:2007-06-13T12-38-40Z
subclass of: GCP_Study
hasa: GCP GermplasmStudy Z2VybXBsYXNt%0A

GCP_Study
comment: GCP_Study, inherits from GCP_Entity and records general meta-data (but not the data contents) of a study.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Study:2007-06-06T02-46-15Z
subclass of: GCP_Entity
hasa: GCP Study cHJvamVjdA%3D%3D%0A
has: GCP Study aW52ZXN0aWdhdG9ycw%3D%3D%0A
has: GCP Study ZmFjdG9ycw%3D%3D%0A
has: GCP Study dmFyaWF0ZXM%3D%0A
has: GCP Study ZWZmZWN0cw%3D%3D%0A

GCP Study cHJvamVjdA%3D%3D%0A
type: GCP_SimpleIdentifier
article name: project

GCP Study aW52ZXN0aWdhdG9ycw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: investigators

GCP Study ZmFjdG9ycw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: factors

GCP Study dmFyaWF0ZXM%3D%0A
type: GCP_SimpleIdentifier
article name: variates

GCP Study ZWZmZWN0cw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: effects

GCP GermplasmStudy Z2VybXBsYXNt%0A
type: GCP_SimpleIdentifier
article name: germplasm

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GermplasmStudy_Z3Jvd3RoQ29uZGl0aW9ucw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: growthConditions

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GermplasmStudy_dHJlYXRtZW50cw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: treatments

GCP LaboratoryGermplasmStudy c2FtcGxlcw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: samples

GCP GenotypeStudy bWFya2Vycw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: markers

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GenomicMapStudy_bWFwcGVkR2VybXBsYXNt%0A
type: GCP_SimpleIdentifier
article name: mappedGermplasm

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GenomicMapStudy_bGlua2FnZU1hcHM%3D%0A
type: GCP_SimpleIdentifier
article name: linkageMaps

GCP_Ontology
comment: When a user requires the retrieval of full details about a Demeter OntologyTerm or its subclasses, the system will return a subclass of GCP_Entity that fully documents it. This will include articles for the name, description and namespace attributes from the superclass GCP_SimpleIdentifier and GCP_Identifier that serve as the concept name, definition and parent ontology, respectively. The GCP_Entity also synonyms covers all concept alias names and database cross references. Of course, since GCP_OntologyTerm is a kind of GCP_Entity, it may also have a primary_citation supporting its definition, plus other pertinent annotation.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Ontology:2007-06-06T00-33-29Z
subclass of: GCP_NameSpace
hasa: GCP Ontology cm9vdA%3D%3D%0A

GCP Ontology cm9vdA%3D%3D%0A
type: GCP_OntologyTerm
article name: root

GCP_MolecularVariantSet
comment: MolecularVariantSet is any ad hoc Set of MolecularVariant instances.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MolecularVariantSet:2007-06-17T05-15-53Z
subclass of: GCP_SimpleFeature

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_MolecularVariantSet_bW9sZWN1bGFyVmFyaWFudHM%3D%0A
type: GCP_SimpleIdentifier
article name: molecularVariants

PDGJOB
comment: This object represents a job id, with the answering MOBY method, killcode, and a timeout
publisher: pdg.cnb.uam.es
identifier: urn:lsid:biomoby.org:objectclass:PDGJOB:2001-09-21T16-00-00Z
hasa: PDGJOB YW5zd2VyU2VydmljZQ%3D%3D%0A
hasa: PDGJOB YXV0aFVSSQ%3D%3D%0A
subclass of: Object
hasa: PDGJOB dGltZW91dA%3D%3D%0A
hasa: PDGJOB a2lsbGNvZGU%3D%0A
hasa: PDGJOB a2lsbFNlcnZpY2U%3D%0A

PDGJOB YW5zd2VyU2VydmljZQ%3D%3D%0A
type: String
article name: answerService

PDGJOB YXV0aFVSSQ%3D%3D%0A
type: String
article name: authURI

PDGJOB dGltZW91dA%3D%3D%0A
type: DateTime
article name: timeout

PDGJOB a2lsbGNvZGU%3D%0A
type: String
article name: killcode

PDGJOB a2lsbFNlcnZpY2U%3D%0A
type: String
article name: killService

text-uuencoded
comment: uuencoded data
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:text-uuencoded:2001-09-21T16-00-00Z
subclass of: text-plain

Nexus_Text
comment: phylogenetic tree format
publisher: bioinfo.inibap.org
identifier: urn:lsid:biomoby.org:objectclass:Nexus_Text:2006-11-28T07-10-13Z
subclass of: text-formatted

OccurrenceRecord
comment: Brief description of a taxon returned by the GBIFGetTaxonConcepts.
publisher: www.gbif.org
identifier: urn:lsid:biomoby.org:objectclass:OccurrenceRecord:2006-08-15T13-00-00Z
subclass of: Object
hasa: OccurrenceRecord Q291bnRyeQ%3D%3D%0A
hasa: OccurrenceRecord TGF0aXR1ZGU%3D%0A
hasa: OccurrenceRecord TG9uZ2l0dWRl%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#OccurrenceRecord_SW5zdGl0dXRpb25Db2Rl%0A
type: String
article name: InstitutionCode

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#OccurrenceRecord_U2NpZW50aWZpY05hbWU%3D%0A
type: String
article name: ScientificName

OccurrenceRecord Q291bnRyeQ%3D%3D%0A
type: String
article name: Country

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#OccurrenceRecord_QmFzaXNPZlJlY29yZA%3D%3D%0A
type: String
article name: BasisOfRecord

OccurrenceRecord TGF0aXR1ZGU%3D%0A
type: String
article name: Latitude

OccurrenceRecord TG9uZ2l0dWRl%0A
type: String
article name: Longitude

Tropgene_locus
comment: data types containing locus and allele identifiers
publisher: tropgenedb.cirad.fr
identifier: urn:lsid:biomoby.org:objectclass:Tropgene_locus:2001-09-21T16-00-00Z
has: Tropgene locus YWxsZWxl%0A
subclass of: Object

Tropgene locus YWxsZWxl%0A
type: Object
article name: allele

ExtractData
comment: This represents an extract.
publisher: www.rri.sari.ac.uk
identifier: urn:lsid:biomoby.org:objectclass:ExtractData:2006-07-31T13-34-52Z
subclass of: MeasuredBioMaterialData

MeasuredBioMaterialData
comment: This class is the root class for measured biomaterials, ie biomaterials for where the quantity is tracked.
publisher: www.rri.sari.ac.uk
identifier: urn:lsid:biomoby.org:objectclass:MeasuredBioMaterialData:2006-07-31T13-32-39Z
hasa: MeasuredBioMaterialData aXNQb29sZWQ%3D%0A
subclass of: Object
hasa: MeasuredBioMaterialData bmFtZQ%3D%3D%0A

MeasuredBioMaterialData aXNQb29sZWQ%3D%0A
type: Boolean
article name: isPooled

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MeasuredBioMaterialData_cmVtYWluaW5nUXVhbnRpdHk%3D%0A
type: Float
article name: remainingQuantity

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MeasuredBioMaterialData_b3JpZ2luYWxRdWFudGl0eQ%3D%3D%0A
type: Float
article name: originalQuantity

MeasuredBioMaterialData bmFtZQ%3D%3D%0A
type: String
article name: name

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MeasuredBioMaterialData_ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

Equick_tandem_repeat
comment: Header and table showing the potential tandem repeats scanned in a sequence by means of runEMBOSSEquicktandem service.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Equick_tandem_repeat:2001-09-21T16-00-00Z
subclass of: Object
hasa: Equick tandem repeat RnJvbQ%3D%3D%0A
hasa: Equick tandem repeat VG8%3D%0A
hasa: Equick tandem repeat SGl0Y291bnQ%3D%0A
hasa: Equick tandem repeat VGhyZXNob2xk%0A
hasa: Equick tandem repeat TWF4cmVwZWF0%0A
has: Equick tandem repeat

Equick tandem repeat RnJvbQ%3D%3D%0A
type: Integer
article name: From

Equick tandem repeat VG8%3D%0A
type: Integer
article name: To

Equick tandem repeat SGl0Y291bnQ%3D%0A
type: Integer
article name: Hitcount

Equick tandem repeat VGhyZXNob2xk%0A
type: Integer
article name: Threshold

Equick tandem repeat TWF4cmVwZWF0%0A
type: Integer
article name: Maxrepeat

Equick_tandem_table
comment: Table showing the potential tandem repeats scanned in a sequence.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Equick_tandem_table:2001-09-21T16-00-00Z
subclass of: Object
hasa: Equick tandem table U3RhcnQ%3D%0A
hasa: Equick tandem table RW5k%0A
hasa: Equick tandem table U2NvcmU%3D%0A
hasa: Equick tandem table U2l6ZQ%3D%3D%0A
hasa: Equick tandem table Q291bnQ%3D%0A

Equick tandem table U3RhcnQ%3D%0A
type: Integer
article name: Start

Equick tandem table RW5k%0A
type: Integer
article name: End

Equick tandem table U2NvcmU%3D%0A
type: Integer
article name: Score

Equick tandem table U2l6ZQ%3D%3D%0A
type: Integer
article name: Size

Equick tandem table Q291bnQ%3D%0A
type: Integer
article name: Count

Nj_Tree
comment: Neighbour joining tree built from a TropGENE_Distance_Matrix object
publisher: bioinfo.inibap.org
identifier: urn:lsid:biomoby.org:objectclass:Nj_Tree:2001-09-21T16-00-00Z
subclass of: Object
hasa: Nj Tree TmV4dXM%3D%0A
hasa: Nj Tree VHJlZQ%3D%3D%0A

Nj Tree TmV4dXM%3D%0A
type: String
article name: Nexus

Nj Tree VHJlZQ%3D%3D%0A
type: String
article name: Tree

GO_Term
comment: A very lightweight object holding a GO term name and its definition
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:GO_Term:2001-09-21T16-00-00Z
hasa: GO Term VGVybQ%3D%3D%0A
hasa: GO Term RGVmaW5pdGlvbg%3D%3D%0A
subclass of: Object

GO Term VGVybQ%3D%3D%0A
type: String
article name: Term

GO Term RGVmaW5pdGlvbg%3D%3D%0A
type: String
article name: Definition

Email
comment: An e-mail address object.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:Email:2006-03-01T18-35-14Z
subclass of: Object

Structure_Alignment_report
comment: Structure alignment report.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Structure_Alignment_report:2001-09-21T16-00-00Z
subclass of: Object
hasa: Structure Alignment report UmVwb3J0%0A
has: Structure Alignment report

Structure Alignment report UmVwb3J0%0A
type: text-html
article name: Report

PDB-Enriched
comment: PDB structure together with a Jmol script and a html description.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:PDB-Enriched:2001-09-21T16-00-00Z
subclass of: Object
hasa: PDB-Enriched Sm1vbFNjcmlwdA%3D%3D%0A
hasa: PDB-Enriched RGVzY3JpcHRpb24%3D%0A

PDB-Enriched Sm1vbFNjcmlwdA%3D%3D%0A
type: String
article name: JmolScript

PDB-Enriched RGVzY3JpcHRpb24%3D%0A
type: text-html
article name: Description

CommentedNASequence
comment: Commented nucleic acid sequence.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:CommentedNASequence:2001-09-21T16-00-00Z
subclass of: NucleotideSequence

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#CommentedNASequence_RGVzY3JpcHRpb24%3D%0A
type: String
article name: Description

Typed_Image
comment: An image encoded with a legend
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:Typed_Image:2006-10-05T11-03-27Z
subclass of: Image_Encoded
hasa: Typed Image bGVnZW5k%0A

Image_Encoded
comment: An image encoded in Base-64
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:Image_Encoded:2006-10-05T11-02-08Z
hasa: Image Encoded bWltZVR5cGU%3D%0A
hasa: Image Encoded cmF3ZGF0YQ%3D%3D%0A
subclass of: Object

Image Encoded bWltZVR5cGU%3D%0A
type: String
article name: mimeType

Image Encoded cmF3ZGF0YQ%3D%3D%0A
type: String
article name: rawdata

Typed Image bGVnZW5k%0A
type: String
article name: legend

GCP_MapPoint
comment: A GCP_MapPoint is a point coordinate defining a GCP_MapPosition.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MapPoint:2007-06-17T01-25-23Z
subclass of: GCP_MapPosition

Password
comment: A generic password object.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:Password:2006-03-01T18-35-15Z
subclass of: Object

TotalCrap
comment: a human-readable description of the object
publisher: test.suite.com
identifier: urn:lsid:biomoby.org:objectclass:TotalCrap:2006-11-02T20-19-01Z
hasa: TotalCrap YXJ0aWNsZU5hbWUz%0A
subclass of: Object

TotalCrap YXJ0aWNsZU5hbWUz%0A
type: Object
article name: articleName3

myTree
comment: Phylogenetic tree
publisher: www.phytome.org
identifier: urn:lsid:biomoby.org:objectclass:myTree:2001-09-21T16-00-00Z
subclass of: text-formatted

b64_encoded_svgz
comment: Base 64 encoded svgz image (a base64 encoded, gezipped svg vector graphics)
publisher: mapman.mpimp-golm.mpg.de
identifier: urn:lsid:biomoby.org:objectclass:b64_encoded_svgz:2006-05-28T16-08-33Z
subclass of: text-base64

GCP_Passport
comment: GCP_Passport is simply a list of GCP_SimpleFeature objects identifying and reporting descriptor data about a GCP_accession. The GCP_SimpleFeature type designates the passport descriptor controlled vocabulary name from pertinent GCP ontology.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Passport:2007-06-13T01-16-07Z
subclass of: GCP_FeatureSet
hasa: GCP Passport YWNjZXNzaW9u%0A

GCP Passport YWNjZXNzaW9u%0A
type: GCP_SimpleIdentifier
article name: accession

GCP_GeneProduct
comment: A GCP_GeneProduct is a wrapper defining molecular biological products in living cells, whose function can be characterized using GCP_OntologyTerms specifying Gene Ontology (GO) terms. These are partitioned in this data type as molecularFunctions, biologicalProcesses and cellularCompartments attributes identified by the corresponding sets of GCP_SimpleIdentifier objects.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GeneProduct:2007-06-17T00-43-34Z
subclass of: GCP_Entity

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GeneProduct_bW9sZWN1bGFyRnVuY3Rpb25z%0A
type: GCP_SimpleIdentifier
article name: molecularFunctions

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GeneProduct_YmlvbG9naWNhbFByb2Nlc3Nlcw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: biologicalProcesses

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GeneProduct_Y2VsbHVsYXJDb21wYXJ0bWVudHM%3D%0A
type: GCP_SimpleIdentifier
article name: cellularCompartments

PhenotypeDescription
comment: Object containing a description of the morphological features of a species
publisher: arabidopsis.info
identifier: urn:lsid:biomoby.org:objectclass:PhenotypeDescription:2001-09-21T16-00-00Z
subclass of: Object
hasa: PhenotypeDescription UGhlbm90eXBl%0A

PhenotypeDescription UGhlbm90eXBl%0A
type: String
article name: Phenotype

Computador
comment: Descricao Computador
publisher: www.genoma.com
identifier: urn:lsid:biomoby.org:objectclass:Computador:2001-09-21T16-00-00Z
has: Computador bW9kZWxv%0A
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Computador_cXRkZVByb2Nlc3NhZG9yZXM%3D%0A
type: Integer
article name: qtdeProcessadores

Computador bW9kZWxv%0A
type: String
article name: modelo

Field
comment: A database field name.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:Field:2006-03-01T18-35-18Z
subclass of: Object

GCP_GermplasmNeighbourhood
comment: GCP_GermplasmNeighbourhood is a kind of GCP_GermplasmSet which has a formal biological or management role (see GCP domain model descriptions). Such a set is formally established by source_germplasm (modeled as a set of GCP_SimpleIdentifiers identifying GCP_Germplasm objects) and (generally) belongs to a specified germplasm_collection (also specified by a GCP_SimpleIdentifiers).
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GermplasmNeighbourhood:2006-11-28T09-21-49Z
subclass of: GCP_GermplasmSet

GCP_GermplasmSet
comment: GCP_GermplasmSet is simply any collection of germplasm objects of a specified type (inferred by the namespace of its primary identifier, since it indirectly inherits from GCP_SimpleIdentifier via GCP_Entity). The list of germplasm is identified indirectly by GCP_SimpleIdentifiers.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GermplasmSet:2006-11-28T09-21-03Z
subclass of: GCP_Entity
has: GCP GermplasmSet Z2VybXBsYXNt%0A

GCP GermplasmSet Z2VybXBsYXNt%0A
type: GCP_SimpleIdentifier
article name: germplasm

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GermplasmNeighbourhood_Z2VybXBsYXNtQ29sbGVjdGlvbg%3D%3D%0A
type: GCP_SimpleIdentifier
article name: germplasmCollection

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_GermplasmNeighbourhood_c291cmNlR2VybXBsYXNt%0A
type: GCP_SimpleIdentifier
article name: sourceGermplasm

swissprot-flatfile
comment: a formatted plaintext swissprot flatfile
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:swissprot-flatfile:2001-09-21T16-00-00Z
subclass of: text-formatted

BasicGFF3MultiFeature
comment: An object containing all components necessary to represent a simple GFF-compliant sequence feature (the content is NOT validated against the GFF specification)
publisher: www.illuminae.com
subclass of: Object

BasicGFF3SequenceFeature
comment: An object containing all components necessary to represent a simple GFF-compliant sequence feature (the content is NOT validated against the GFF specification)
publisher: www.illuminae.com
hasa: BasicGFF3SequenceFeature c291cmNl%0A
hasa: BasicGFF3SequenceFeature c2VxaWQ%3D%0A
subclass of: Object
hasa: BasicGFF3SequenceFeature c3RhcnQ%3D%0A
hasa: BasicGFF3SequenceFeature ZW5k%0A
hasa: BasicGFF3SequenceFeature c2NvcmU%3D%0A
hasa: BasicGFF3SequenceFeature c3RyYW5k%0A
hasa: BasicGFF3SequenceFeature cGhhc2U%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BasicGFF3SequenceFeature_dHlwZQ%3D%3D%0A
type: String
article name: type

BasicGFF3SequenceFeature c291cmNl%0A
type: String
article name: source

BasicGFF3SequenceFeature c2VxaWQ%3D%0A
type: String
article name: seqid

BasicGFF3SequenceFeature c3RhcnQ%3D%0A
type: Integer
article name: start

BasicGFF3SequenceFeature ZW5k%0A
type: Integer
article name: end

BasicGFF3SequenceFeature c2NvcmU%3D%0A
type: Float
article name: score

BasicGFF3SequenceFeature c3RyYW5k%0A
type: String
article name: strand

BasicGFF3SequenceFeature cGhhc2U%3D%0A
type: String
article name: phase

multi_key_value_pair
comment: key/value pair object for key/value pairs with a 1:many relationship
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:multi_key_value_pair:2001-09-21T16-00-00Z
has: multi key value pair dmFsdWU%3D%0A
hasa: multi key value pair a2V5%0A
subclass of: Object

multi key value pair dmFsdWU%3D%0A
type: String
article name: value

multi key value pair a2V5%0A
type: String
article name: key

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BasicGFF3SequenceFeature_Y29sdW1uOV90YWdfdmFsdWU%3D%0A
type: multi_key_value_pair
article name: column9_tag_value

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BasicGFF3MultiFeature_QmFzaWNHRkYzU2VxdWVuY2VGZWF0dXJl%0A
type: BasicGFF3SequenceFeature
article name: BasicGFF3SequenceFeature

b64_encoded_PDB
comment: PDB compressed in zlib and encoded in base 64
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:b64_encoded_PDB:2001-09-21T16-00-00Z
subclass of: text-base64

GCP_RelativeMapPosition
comment: The GCP domain model concept of RelativeMapPosition can be modelled as a kind of GCP_MapPosition with a relationship defined by a GCP_SimpleIdentifier specifying a term in a relationship ontology.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_RelativeMapPosition:2007-06-17T02-17-16Z
subclass of: GCP_MapPosition

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_RelativeMapPosition_cmVsYXRpb25zaGlw%0A
type: GCP_SimpleIdentifier
article name: relationship

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_RelativeMapPosition_bWFwUG9zaXRpb24%3D%0A
type: GCP_MapPosition
article name: mapPosition

TropGENE_Diversity_Matrix_Diploid
comment: tables concerning diploid accessions for diversity analysis : accessions per row, alleles in column, coded in 0/1/2
publisher: tropgenedb.cirad.fr
identifier: urn:lsid:biomoby.org:objectclass:TropGENE_Diversity_Matrix_Diploid:2001-09-21T16-00-00Z
subclass of: Object
hasa: TropGENE Diversity Matrix Diploid TWF0cml4%0A

TropGENE Diversity Matrix Diploid TWF0cml4%0A
type: String
article name: Matrix

ProdomMotif
comment: Prodom motif.
publisher: inb.bsc.es
identifier: urn:lsid:biomoby.org:objectclass:ProdomMotif:2006-07-21T13-22-30Z
hasa: ProdomMotif QWxpZ25tZW50%0A
hasa: ProdomMotif UmFkaXVz%0A
hasa: ProdomMotif RGlhbWV0ZXI%3D%0A
hasa: ProdomMotif Q2xvc2VzdFNlcQ%3D%3D%0A
hasa: ProdomMotif QUM%3D%0A
subclass of: Object
hasa: ProdomMotif S2V5d29yZHM%3D%0A
hasa: ProdomMotif SUQ%3D%0A
hasa: ProdomMotif Q29uc2Vuc3Vz%0A

ProdomMotif QWxpZ25tZW50%0A
type: Sequence_alignment_report
article name: Alignment

ProdomMotif UmFkaXVz%0A
type: String
article name: Radius

ProdomMotif RGlhbWV0ZXI%3D%0A
type: String
article name: Diameter

ProdomMotif Q2xvc2VzdFNlcQ%3D%3D%0A
type: AminoAcidSequence
article name: ClosestSeq

ProdomMotif QUM%3D%0A
type: String
article name: AC

ProdomMotif S2V5d29yZHM%3D%0A
type: String
article name: Keywords

ProdomMotif SUQ%3D%0A
type: String
article name: ID

ProdomMotif Q29uc2Vuc3Vz%0A
type: AminoAcidSequence
article name: Consensus

FastaConsensiFromGroup2
comment: Fasta Object
publisher: www.genoma.com
identifier: urn:lsid:biomoby.org:objectclass:FastaConsensiFromGroup2:2001-09-21T16-00-00Z
has: FastaConsensiFromGroup2 YXV0b3I%3D%0A
has: FastaConsensiFromGroup2 ZGF0ZQ%3D%3D%0A
has: FastaConsensiFromGroup2 ZmFzdGE%3D%0A
has: FastaConsensiFromGroup2 Z3JvdXBDb2Q%3D%0A
subclass of: Object

FastaConsensiFromGroup2 YXV0b3I%3D%0A
type: String
article name: autor

FastaConsensiFromGroup2 ZGF0ZQ%3D%3D%0A
type: String
article name: date

FastaConsensiFromGroup2 ZmFzdGE%3D%0A
type: String
article name: fasta

FastaConsensiFromGroup2 Z3JvdXBDb2Q%3D%0A
type: String
article name: groupCod

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#FastaConsensiFromGroup2_cHJvamVjdE5hbWU%3D%0A
type: String
article name: projectName

Locus
comment: A lightweight object representing a Locus. The namespace and id should indicate the specific Locus being described. The contained Allele objects may be used to indicate a series of Alleles for that locus, if appropriate. If there is no Allele information, or if specification of an Allele is not appropriate (e.g. in the case of a MappedLocus object), then a single Allele object with blank namespace, id, and description would be appropriate.
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:Locus:2006-06-29T16-56-19Z
subclass of: Object
has: Locus QWxsZWxl%0A

Allele
comment: A lightweight object representing an Allele. The namespace and id should indicate the specific Allele being described. The contained String object is a human-readable description of the Allele in whatever form is most appropriate (e.g. the phenotype).
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:Allele:2006-06-29T16-47-03Z
subclass of: Object
hasa: Allele ZGVzY3JpcHRpb24%3D%0A

Allele ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

Locus QWxsZWxl%0A
type: Allele
article name: Allele

TEST
comment: FASTA formatted sequence
publisher: www.sdsc.edu
identifier: urn:lsid:biomoby.org:objectclass:TEST:2001-09-21T16-00-00Z
subclass of: text-formatted

User
comment: A generic user object.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:User:2006-03-01T18-35-16Z
subclass of: Object
hasa: User ZW1haWw%3D%0A
hasa: User cGFzc3dvcmQ%3D%0A

User ZW1haWw%3D%0A
type: Email
article name: email

User cGFzc3dvcmQ%3D%0A
type: Password
article name: password

TropGENE_Diversity_Matrix
comment: Complete disjunctive tables for diversity analysis : accessions per row, alleles in column, coded in 0/1 with 2 columns per allele (one for presence, one for absence)
publisher: tropgenedb.cirad.fr
identifier: urn:lsid:biomoby.org:objectclass:TropGENE_Diversity_Matrix:2001-09-21T16-00-00Z
subclass of: text-formatted

GCP_LocusSequence
comment: Sequence of a locus for GCP
publisher: tropgenedb.cirad.fr
identifier: urn:lsid:biomoby.org:objectclass:GCP_LocusSequence:2006-05-24T09-51-47Z
subclass of: NucleotideSequence

FASTA_Base_Quality
comment: Sequence base quality data in FASTA format
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:FASTA_Base_Quality:2006-05-03T09-02-34Z
subclass of: FASTA

GCP_RNASequence
comment: A GCP_RNASequence is a kind of GCP_NucleotideSequence that is composed of ribonucleic acid. It may be associated with one or more peptideSequences translations of its sequence information which are dereferenced using GCP_SimpleIdentifier objects.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_RNASequence:2007-06-17T05-48-24Z
subclass of: GCP_NucleotideSequence
has: GCP RNASequence cGVwdGlkZVNlcXVlbmNlcw%3D%3D%0A

GCP RNASequence cGVwdGlkZVNlcXVlbmNlcw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: peptideSequences

MGIS_ACCESSION
comment: Accessions in the MGIS database
publisher: biomoby.inibap.org
identifier: urn:lsid:biomoby.org:objectclass:MGIS_ACCESSION:2001-09-21T16-00-00Z
hasa: MGIS ACCESSION bWNwZDpPUklHQ1RZ%0A
hasa: MGIS ACCESSION bWdpczpTRUNUSU9O%0A
hasa: MGIS ACCESSION bWNwZDpTUEVDSUVT%0A
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QmlvdGljX3N0cmVzc19ZZWxsb3dzaWc%3D%0A
type: String
article name: Biotic_stress_Yellowsig

MGIS ACCESSION bWNwZDpPUklHQ1RZ%0A
type: String
article name: mcpd:ORIGCTY

MGIS ACCESSION bWdpczpTRUNUSU9O%0A
type: String
article name: mgis:SECTION

MGIS ACCESSION bWNwZDpTUEVDSUVT%0A
type: String
article name: mcpd:SPECIES

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_bWNwZDpDT0xMQ09ERQ%3D%3D%0A
type: String
article name: mcpd:COLLCODE

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QmlvdGljX3N0cmVzc19CbGFja3NpZw%3D%3D%0A
type: String
article name: Biotic_stress_Blacksig

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QmlvdGljX3N0cmVzc19GdXNhcml1bQ%3D%3D%0A
type: String
article name: Biotic_stress_Fusarium

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QmlvdGljX3N0cmVzc19wc2V1ZG9tb25hcw%3D%3D%0A
type: String
article name: Biotic_stress_pseudomonas

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QmlvdGljX3N0cmVzc19SYWRvcGhvbHVz%0A
type: String
article name: Biotic_stress_Radopholus

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QmlvdGljX3N0cmVzc19QcmF0eWxlbmNodXNjb2Y%3D%0A
type: String
article name: Biotic_stress_Pratylenchuscof

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QmlvdGljX3N0cmVzc19QcmF0eWxlbmNodXNnb29k%0A
type: String
article name: Biotic_stress_Pratylenchusgood

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QmlvdGljX3N0cmVzc19jb3Ntb3BvbGl0ZXM%3D%0A
type: String
article name: Biotic_stress_cosmopolites

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QWJpb3RpY19zdHJlc3NfTG93dGVtcA%3D%3D%0A
type: String
article name: Abiotic_stress_Lowtemp

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QWJpb3RpY19zdHJlc3NfRHJvdWdodA%3D%3D%0A
type: String
article name: Abiotic_stress_Drought

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QWJpb3RpY19zdHJlc3NfRmxvb2Rpbmc%3D%0A
type: String
article name: Abiotic_stress_Flooding

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QWJpb3RpY19zdHJlc3NfTWluZXJhbGRlZg%3D%3D%0A
type: String
article name: Abiotic_stress_Mineraldef

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QWJpb3RpY19zdHJlc3NfV2luZHM%3D%0A
type: String
article name: Abiotic_stress_Winds

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QWJpb3RpY19zdHJlc3NfU29pbGFjaWRpdHk%3D%0A
type: String
article name: Abiotic_stress_Soilacidity

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QWJpb3RpY19zdHJlc3NfTWFuZ2FuZXNldG94%0A
type: String
article name: Abiotic_stress_Manganesetox

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_ACCESSION_QWJpb3RpY19zdHJlc3NfSGlnaHRlbXA%3D%0A
type: String
article name: Abiotic_stress_Hightemp

GCP_Protein
comment: A GCP_Protein is a GCP_GeneProduct composed of a functional aggregation of GCP_PeptideSequence objects, which are identified by a set of GCP_SimpleIdentifier objects.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Protein:2007-06-17T00-46-26Z
subclass of: GCP_GeneProduct
has: GCP Protein cGVwdGlkZVNlcXVlbmNlcw%3D%3D%0A

GCP Protein cGVwdGlkZVNlcXVlbmNlcw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: peptideSequences

ProbeExpressionData
comment: Expression data on a probe derived from microarray experiment.
publisher: www.nias.affrc.go.jp
identifier: urn:lsid:biomoby.org:objectclass:ProbeExpressionData:2001-09-21T16-00-00Z
has: ProbeExpressionData Y29uZGl0aW9u%0A
hasa: ProbeExpressionData cHJvYmVpZA%3D%3D%0A
subclass of: Object

TargetCondition
comment: Experimental result under treatment type or growth conditions for microarray experiment.
publisher: www.nias.affrc.go.jp
identifier: urn:lsid:biomoby.org:objectclass:TargetCondition:2001-09-21T16-00-00Z
hasa: TargetCondition cmF0aW8%3D%0A
subclass of: Object

TargetCondition cmF0aW8%3D%0A
type: Float
article name: ratio

ProbeExpressionData Y29uZGl0aW9u%0A
type: TargetCondition
article name: condition

ProbeId
comment: Material placed on a spot on microarray to represent a biological sequence. The ProbeID comes from KOME database, e,g, AU088561, 002-168-D12. typeOfMicroArray is e.g. cDNA, oligo.
publisher: www.nias.affrc.go.jp
identifier: urn:lsid:biomoby.org:objectclass:ProbeId:2001-09-21T16-00-00Z
subclass of: Object

ProbeExpressionData cHJvYmVpZA%3D%3D%0A
type: ProbeId
article name: probeid

HFormat-text
comment: HFormat Text
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:HFormat-text:2001-09-21T16-00-00Z
subclass of: text-formatted

Decypher_Text
comment: Alignment text output from Decypher hardware search accelerator
publisher: coe01.ucalgary.ca
identifier: urn:lsid:biomoby.org:objectclass:Decypher_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

DNASequenceWithGFFFeatures
comment: A DNA Sequence including GFF-style features. HINT: the id attribute of this object should be equivalent to the 'reference' String component of each contained BasicGFFSequenceFeature object, or it wont make much sense.
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:DNASequenceWithGFFFeatures:2001-09-21T16-00-00Z
has: DNASequenceWithGFFFeatures
subclass of: DNASequence

BasicGFFSequenceFeature
comment: An object containing all components necessary to represent a simple GFF-compliant sequence feature (the content is NOT validated against the GFF specification)
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:BasicGFFSequenceFeature:2001-09-21T16-00-00Z
hasa: BasicGFFSequenceFeature cmVmZXJlbmNl%0A
hasa: BasicGFFSequenceFeature c291cmNl%0A
hasa: BasicGFFSequenceFeature bWV0aG9k%0A
hasa: BasicGFFSequenceFeature c3RhcnQ%3D%0A
hasa: BasicGFFSequenceFeature c3RvcA%3D%3D%0A
hasa: BasicGFFSequenceFeature c2NvcmU%3D%0A
hasa: BasicGFFSequenceFeature c3RyYW5k%0A
hasa: BasicGFFSequenceFeature ZnJhbWU%3D%0A
hasa: BasicGFFSequenceFeature cGhhc2U%3D%0A
subclass of: Object

BasicGFFSequenceFeature cmVmZXJlbmNl%0A
type: String
article name: reference

BasicGFFSequenceFeature c291cmNl%0A
type: String
article name: source

BasicGFFSequenceFeature bWV0aG9k%0A
type: String
article name: method

BasicGFFSequenceFeature c3RhcnQ%3D%0A
type: Integer
article name: start

BasicGFFSequenceFeature c3RvcA%3D%3D%0A
type: Integer
article name: stop

BasicGFFSequenceFeature c2NvcmU%3D%0A
type: Float
article name: score

BasicGFFSequenceFeature c3RyYW5k%0A
type: String
article name: strand

BasicGFFSequenceFeature ZnJhbWU%3D%0A
type: String
article name: frame

BasicGFFSequenceFeature cGhhc2U%3D%0A
type: String
article name: phase

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BasicGFFSequenceFeature_Y29sdW1uOV90YWdfdmFsdWU%3D%0A
type: multi_key_value_pair
article name: column9_tag_value

MatrixInteger
comment: MatrixInteger object.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:MatrixInteger:2006-03-21T11-52-43Z
subclass of: Matrix
hasa: MatrixInteger S2V5%0A
has: MatrixInteger QXJyYXk%3D%0A

MatrixInteger S2V5%0A
type: Integer
article name: Key

MatrixInteger QXJyYXk%3D%0A
type: ArrayInteger
article name: Array

PDB_Enriched
comment: PDB structure together with a Jmol script and a html description.
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:PDB_Enriched:2006-10-04T14-28-28Z
hasa: PDB Enriched RGVzY3JpcHRpb24%3D%0A
hasa: PDB Enriched Sm1vbFNjcmlwdA%3D%3D%0A
subclass of: PDB-Text

PDB Enriched RGVzY3JpcHRpb24%3D%0A
type: text-html
article name: Description

PDB Enriched Sm1vbFNjcmlwdA%3D%3D%0A
type: String
article name: JmolScript

PDB-Text
comment: PDB format report
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:PDB-Text:2006-10-04T14-19-35Z
subclass of: text_formatted

PotentialTaxon
comment: a potential taxon is a scientific name plus the taxonomic reference where this name has been described.
publisher: biocase.org
identifier: urn:lsid:biomoby.org:objectclass:PotentialTaxon:2006-09-19T16-13-01Z
subclass of: TaxonScientificName
hasa: PotentialTaxon UmVmZXJlbmNl%0A

PotentialTaxon UmVmZXJlbmNl%0A
type: String
article name: Reference

GCP_ManagementNeighbourhood
comment: Most germplasm neighbourhoods are defined by biological relationships, but a specific kind of GCP_ManagementNeighbourhood serves to conserve biodiversity of a given set of germplasm called its "founding germplasm" for some organizational purpose (e.g. ex situ conservation as an genetic resource accession).
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_ManagementNeighbourhood:2006-11-28T09-22-23Z
subclass of: GCP_MaintenanceNeighbourhood

GCP_MaintenanceNeighbourhood
comment: A GCP_MaintenanceNeighbourhood is a GCP_GermplasmNeighbourhood striving to conserve biological diversity in a set of Germplasm.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MaintenanceNeighbourhood:2007-06-12T01-52-01Z
subclass of: GCP_GermplasmNeighbourhood

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_ManagementNeighbourhood_Zm91bmRpbmdHZXJtcGxhc20%3D%0A
type: GCP_SimpleIdentifier
article name: foundingGermplasm

genomeSNP
comment: SNP at arbitrary position in the genome
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:genomeSNP:2006-06-26T15-41-39Z
hasa: genomeSNP c3RyYWlu%0A
subclass of: Object
hasa: genomeSNP Y29uZmlkZW5jZQ%3D%3D%0A
hasa: genomeSNP YmFzZV92YXI%3D%0A
hasa: genomeSNP YmFzZV9yZWY%3D%0A
hasa: genomeSNP cG9z%0A

genomeSNP c3RyYWlu%0A
type: String
article name: strain

genomeSNP Y29uZmlkZW5jZQ%3D%3D%0A
type: Integer
article name: confidence

genomeSNP YmFzZV92YXI%3D%0A
type: String
article name: base_var

genomeSNP YmFzZV9yZWY%3D%0A
type: String
article name: base_ref

genomeSNP cG9z%0A
type: Position
article name: pos

InteractionMethod
comment: We represent an interaction method with this object
publisher: pdg.cnb.uam.es
identifier: urn:lsid:biomoby.org:objectclass:InteractionMethod:2001-09-21T16-00-00Z
hasa: InteractionMethod dGVybQ%3D%3D%0A
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InteractionMethod_c2hvcnRsYWJlbA%3D%3D%0A
type: String
article name: shortlabel

InteractionMethod dGVybQ%3D%3D%0A
type: String
article name: term

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InteractionMethod_ZGVmaW5pdGlvbg%3D%3D%0A
type: String
article name: definition

PSea-text-formatted
comment: Text formatted by PSea
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:PSea-text-formatted:2001-09-21T16-00-00Z
subclass of: text-formatted

GetzJob
comment: A getz job.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:GetzJob:2006-03-01T18-35-57Z
subclass of: Object
hasa: GetzJob cXVlcnk%3D%0A
has: GetzJob ZmllbGQ%3D%0A

Query
comment: A query object.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:Query:2006-03-01T18-35-19Z
subclass of: Object

GetzJob cXVlcnk%3D%0A
type: Query
article name: query

GetzJob ZmllbGQ%3D%0A
type: Field
article name: field

GCP_Content
comment: Large or complex (binary) publication content of GCP_BiblioReference instances is wrapped by the GCP_Content class, which is a kind of GCP_Feature with a body which can be an object of any data type extending the MOBY:Object data type.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Content:2007-06-06T01-29-30Z
subclass of: GCP_SimpleFeature
hasa: GCP Content Ym9keQ%3D%3D%0A

GCP Content Ym9keQ%3D%3D%0A
type: Object
article name: body

CommentedDNASequence
comment: Represents a DNA Sequence including a String (Description).
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:CommentedDNASequence:2001-09-21T16-00-00Z
subclass of: DNASequence

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#CommentedDNASequence_RGVzY3JpcHRpb24%3D%0A
type: String
article name: Description

Frequencies
comment: Lightweight object containing the string value representing the genotype and the allele frequencies obtained from the HapMap project.
publisher: icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:Frequencies:2006-08-18T03-26-18Z
hasa: Frequencies RnJlcXVlbmN5%0A
subclass of: Object

Frequencies RnJlcXVlbmN5%0A
type: String
article name: Frequency

Dummy_data
comment: test data for practicing service development
publisher: coding.plantpath.ksu.edu
subclass of: text-formatted

FASTA_Text
comment: Fasta report.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:FASTA_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Dummy_data_ZHVtbXlfRkFTVEFfVGV4dA%3D%3D%0A
type: FASTA_Text
article name: dummy_FASTA_Text

GCP_ValueSet
comment: A GCP_ValueSet is explicitly modeled here as MOBY data types (rather than a vanilla MOBY:Collection) because they are used in contexts (e.g. a GCP_Study) where their management as a complex unit (e.g. the Study observationUnit is an important kind of ValueSet). That said, a GCP_ValueSet contains values that are a MOBY:Collection of GCP_Value objects.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_ValueSet:2007-06-06T00-36-29Z
subclass of: GCP_SimpleIdentifier
has: GCP ValueSet dmFsdWVz%0A

GCP ValueSet dmFsdWVz%0A
type: GCP_Value
article name: values

FASTA_Base_Quality_multi
comment: sequences base quality data in FASTA format
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:FASTA_Base_Quality_multi:2006-05-03T09-02-44Z
subclass of: FASTA_Base_Quality

gene
comment: Contains string values, which represents gene name, description and summary
publisher: icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:gene:2006-04-02T17-17-58Z
hasa: gene ZGVzY3JpcHRpb24%3D%0A
hasa: gene bmFtZQ%3D%3D%0A
subclass of: Object
hasa: gene c3VtbWFyeQ%3D%3D%0A

gene ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

gene bmFtZQ%3D%3D%0A
type: String
article name: name

gene c3VtbWFyeQ%3D%3D%0A
type: String
article name: summary

IntAct_XML
comment: This is XML based on IntAct XSD
publisher: pdg.cnb.uam.es
identifier: urn:lsid:biomoby.org:objectclass:IntAct_XML:2001-09-21T16-00-00Z
subclass of: text-xml

ChinookServiceObject
comment: A chinook bioinformatics service that is runnable for the given Moby Data Input
publisher: smweb.bcgsc.bc.ca
identifier: urn:lsid:biomoby.org:objectclass:ChinookServiceObject:2001-09-21T16-00-00Z
subclass of: Object
hasa: ChinookServiceObject bmFtZQ%3D%3D%0A
hasa: ChinookServiceObject dHlwZQ%3D%3D%0A
hasa: ChinookServiceObject bG9jYXRpb24%3D%0A
hasa: ChinookServiceObject dmVyc2lvbg%3D%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#ChinookServiceObject_TW9ieVhNTERhdGEtaW5wdXQ%3D%0A
type: String
article name: MobyXMLData-input

ChinookServiceObject bmFtZQ%3D%3D%0A
type: String
article name: name

ChinookServiceObject dHlwZQ%3D%3D%0A
type: String
article name: type

ChinookServiceObject bG9jYXRpb24%3D%0A
type: String
article name: location

ChinookServiceObject dmVyc2lvbg%3D%3D%0A
type: String
article name: version

GCP_PeptideSequence
comment: A GCP_PeptideSequence is a kind of GCP_Sequence that is composed of amino acid residues. It is usually associated with its transcript which encoded its sequence in an RNA message.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_PeptideSequence:2007-06-17T05-50-31Z
subclass of: GCP_Sequence
hasa: GCP PeptideSequence dHJhbnNjcmlwdA%3D%3D%0A

GCP PeptideSequence dHJhbnNjcmlwdA%3D%3D%0A
type: GCP_SimpleIdentifier
article name: transcript

HMMSearch_Report
comment: Reports the results of searching a set of sequences with a HMM profile.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:HMMSearch_Report:2006-03-21T11-45-06Z
subclass of: Object
hasa: HMMSearch Report SGVhZGVy%0A
hasa: HMMSearch Report U2VxdWVuY2Vz%0A
hasa: HMMSearch Report RG9tYWlucw%3D%3D%0A
hasa: HMMSearch Report SGlzdG9ncmFt%0A

HMMSearch Report SGVhZGVy%0A
type: String
article name: Header

HMMSearch Report U2VxdWVuY2Vz%0A
type: String
article name: Sequences

HMMSearch Report RG9tYWlucw%3D%3D%0A
type: String
article name: Domains

Stockholm_Text
comment: Multiple sequence alignment in Stockholm format.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Stockholm_Text:2006-03-21T11-44-50Z
subclass of: Sequence_alignment_report

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#HMMSearch_Report_QWxpZ25tZW50cw%3D%3D%0A
type: Stockholm_Text
article name: Alignments

HMMSearch Report SGlzdG9ncmFt%0A
type: String
article name: Histogram

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#HMMSearch_Report_U3RhdGlzdGljcw%3D%3D%0A
type: String
article name: Statistics

Phylip_Text
comment: Multiple sequence alignment in Phylip format.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Phylip_Text:2006-03-21T11-49-12Z
subclass of: Sequence_alignment_report

xdom-flatfile
comment: ProDom decomposition of a protein
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:xdom-flatfile:2006-04-03T13-12-39Z
subclass of: text-formatted

testout
comment: Test output object
publisher: www.iris.irri.org
identifier: urn:lsid:biomoby.org:objectclass:testout:2001-09-21T16-00-00Z
hasa: testout Z2lk%0A
hasa: testout ZHZhbHVl%0A
hasa: testout c2NhbGVpZA%3D%3D%0A
hasa: testout dG1ldGhpZA%3D%3D%0A
subclass of: Object

testout Z2lk%0A
type: Integer
article name: gid

testout ZHZhbHVl%0A
type: String
article name: dvalue

testout c2NhbGVpZA%3D%3D%0A
type: Integer
article name: scaleid

testout dG1ldGhpZA%3D%3D%0A
type: Integer
article name: tmethid

iANT_BLAST_Text
comment: Blast text report in iANT format
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:iANT_BLAST_Text:2001-09-21T16-00-00Z
subclass of: Object
hasa: iANT BLAST Text Ymxhc3RfcmVwb3J0%0A

iANT BLAST Text Ymxhc3RfcmVwb3J0%0A
type: String
article name: blast_report

GCP_HoldingInstitute
comment: GCP_HoldingInstitute is an organization that has one more more instances of GCP_GermplasmCollection, dereferenced by GCP_SimpleIdentifiers.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_HolidingInstitute:2007-06-13T12-50-27Z
subclass of: GCP_Organization

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_HoldingInstitute_Y29sbGVjdGlvbnM%3D%0A
type: GCP_SimpleIdentifier
article name: collections

EvaluatedAlignment_Text
comment: Evaluation of a precomputed alignment.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:EvaluatedAlignment_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

GFF2_5
comment: Generic Feature Format File type 2.5 (Gbrowse specific GFF, with special order of column 9)
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:GFF2_5:2001-09-21T16-00-00Z
subclass of: GFF

Descriptor
comment: An object intended to hold the title or description of the identifier in the id field.
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:Descriptor:2006-08-16T00-40-37Z
subclass of: Object
hasa: Descriptor ZGVzY3JpcHRpb24%3D%0A

Descriptor ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

FSOLV_Text
comment: Fractional solvation report
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:FSOLV_Text:2006-03-15T17-38-22Z
subclass of: text_formatted

Collector
comment: An specimen collector. Usually the name of the person who collected an specimen.
publisher: biocase.org
identifier: urn:lsid:biomoby.org:objectclass:Collector:2006-07-31T02-08-09Z
subclass of: Object

PHD_Text
comment: Text Report from PHD program (Secondary structure and accesibility predictions)
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:PHD_Text:2006-10-04T15-13-29Z
subclass of: text_formatted

Tropgene_accession
comment: data types containing Accession, locus and allele identifiers
publisher: tropgenedb.cirad.fr
identifier: urn:lsid:biomoby.org:objectclass:Tropgene_accession:2001-09-21T16-00-00Z
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Tropgene_accession_VHJvcGdlbmVfYmFuYW5h%0A
type: Tropgene_locus
article name: Tropgene_banana

PubMed-MEDLINE
comment: Pubmed article in MEDLINE display format
publisher: prometheus.brc.mcw.edu
identifier: urn:lsid:biomoby.org:objectclass:PubMed-MEDLINE:2001-09-21T16-00-00Z
subclass of: text-formatted

SW
comment: Sequence in SWISS format.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:SW:2001-09-21T16-00-00Z
subclass of: text-formatted

Distance_matrix_text
comment: matrix of pairwise distances between all pairs of taxa, such as distances based on molecular sequence data, gene frequency genetic distances etc.
publisher: bioinfo.inibap.org
identifier: urn:lsid:biomoby.org:objectclass:Distance_matrix_text:2006-11-28T07-03-56Z
subclass of: text-formatted

Ace_Text
comment: data format for assembly information
publisher: genome.imim.es
identifier: urn:lsid:biomoby.org:objectclass:Ace_Text:2006-05-19T12-49-02Z
subclass of: text_formatted

MolWeightsArray
comment: Molecular weights.
publisher: inb.bsc.es
identifier: urn:lsid:biomoby.org:objectclass:MolWeightsArray:2006-08-09T11-03-28Z
subclass of: ArrayFloat

gene_ref
comment: adds synonyms to the parent
publisher: icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:gene_ref:2006-11-07T14-42-45Z
subclass of: gene
has: gene ref c3lub255bXM%3D%0A

gene ref c3lub255bXM%3D%0A
type: String
article name: synonyms

GCP_SimpleClade
comment: The GCP_SimpleClade provides a lightweight version of the Clade interface, only with identification and the corresponding tree file format (e.g. Newick, NHX, phyloxml) is modeled using a GCP_SimpleFeature (whose type specifies the tree document format provided), which models the tree as publication Content.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_SimpleClade:2007-06-11T16-17-47Z
subclass of: GCP_Identifier
hasa: GCP SimpleClade dHJlZQ%3D%3D%0A

GCP SimpleClade dHJlZQ%3D%3D%0A
type: GCP_SimpleFeature
article name: tree

GCP_RNAComplex
comment: A GCP_RNAComplex is a GCP_GeneProduct composed of a functional aggregation of GCP_RNASequence objects, which are identified by a set of GCP_SimpleIdentifier objects.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_RNAComplex:2007-06-17T00-47-14Z
subclass of: GCP_GeneProduct
has: GCP RNAComplex Uk5BU2VxdWVuY2Vz%0A

GCP RNAComplex Uk5BU2VxdWVuY2Vz%0A
type: GCP_SimpleIdentifier
article name: RNASequences

SchematikonMotifSupport
comment: Support and unique support for a Schematikon structure motif
publisher: schematikon.org
identifier: urn:lsid:biomoby.org:objectclass:SchematikonMotifSupport:2001-09-21T16-00-00Z
subclass of: Object
hasa: SchematikonMotifSupport U3VwcG9ydA%3D%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SchematikonMotifSupport_VW5pcXVlU3VwcG9ydA%3D%3D%0A
type: Integer
article name: UniqueSupport

SchematikonMotifSupport U3VwcG9ydA%3D%3D%0A
type: Integer
article name: Support

Edge
comment: unstable; under development; subject to redefinition or deregistration without notice; please do not use
publisher: llama.med.harvard.edu
identifier: urn:lsid:biomoby.org:objectclass:Edge:2001-09-21T16-00-00Z
subclass of: Object
hasa: Edge cGFydG5lcg%3D%3D%0A
hasa: Edge ZGlyZWN0aW9u%0A

Edge cGFydG5lcg%3D%3D%0A
type: String
article name: partner

Edge ZGlyZWN0aW9u%0A
type: Integer
article name: direction

GCP_Phenotype
comment: GCP_Phenotype data is modeled as a GCP_FeatureWithObjectValue in which the feature_type is "phenotype", the value_type is "ontology" and the feature values is a cartesian cross product of GCP_OntologyTerms from three ontologies: 1. Plant Ontology 2. Phenotype Attribute 3. Phenotype Attribute Value specified by GCP_SimpleIdentifiers identifying the GCP_OntologyTerms for each. The GCP_FeatureWithObjectValue inherits from GCP_SimpleIdentifier which can point to the GCP_OntologyTerm designating the phenotype itself, in a shared catalog (such as one under development by members of the International Rice Functional Genomics Consortium). For example: <GCP_Phenotype namespace="IRFGC_Mutant" id="0000006" > <GCP_SimpleIdentifier ...articleName="feature_type" >phenotype</GCP_SimpleIdentifier> <GCP_SimpleIdentifier ...articleName="value_type" >ontology</GCP_SimpleIdentifier> ... <MOBY:Collection ...articleName="values" > <GCP_SimpleIdentifier namespace="PO" id="0020040" ...>Basal Leaf Sheath</GCP_SimpleIdentifier> <GCP_SimpleIdentifier namespace="PATO" id="0000033"...>Color</GCP_SimpleIdentifier> <GCP_SimpleIdentifier ...>Purple</GCP_SimpleIdentifier> </GCP_SimpleIdentifier> ... </GCP_Phenotype>
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Phenotype:2006-11-28T09-06-45Z
subclass of: GCP_Feature

GCP_GenomicFeatureDetectionProtocol
comment: Documents the general (non-DNA specific) characteristics of genotyping experiments. See Demeter genotype model for further guidance.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_GenomicFeatureDetectionProtocol:2007-06-13T13-10-29Z
subclass of: GCP_Protocol
has: GCP GenomicFeatureDetectionProtocol YXNzYXlz%0A

GCP_Protocol
comment: A GCP_Protocol documents the parameters of general experimental conditions (e.g. reagents, temperatures, etc.) of a specific laboratory manipulation, as a list of GCP_SimpleFeature annotation.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Protocol:2007-06-06T02-04-10Z
subclass of: GCP_BiblioReference
has: GCP Protocol cGFyYW1ldGVycw%3D%3D%0A

GCP Protocol cGFyYW1ldGVycw%3D%3D%0A
type: GCP_SimpleFeature
article name: parameters

GCP GenomicFeatureDetectionProtocol YXNzYXlz%0A
type: GCP_SimpleIdentifier
article name: assays

SchematikonSegmentID
comment: Schematikon protein structure segment ID
publisher: schematikon.org
identifier: urn:lsid:biomoby.org:objectclass:SchematikonSegmentID:2001-09-21T16-00-00Z
hasa: SchematikonSegmentID SUQ%3D%0A
subclass of: Object

SchematikonSegmentID SUQ%3D%0A
type: String
article name: ID

FASTA-Report
comment: An FASTA alignment Report
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:FASTA-Report:2006-07-06T22-09-38Z
subclass of: Sequence_alignment_report

MappedLocus
comment: A locus that is mapped to a genetic map. the Locus component should hold a Locus (with the associated namespace and id as appropriate), while the MapPosition component should hold the chromosome, start, and end position for that Locus. Start and end may be the same to indicate point maps rather than range maps.
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:MappedLocus:2006-07-31T17-41-15Z
subclass of: Object
hasa: MappedLocus TG9jdXM%3D%0A
hasa: MappedLocus TWFwUG9zaXRpb24%3D%0A

MappedLocus TG9jdXM%3D%0A
type: Locus
article name: Locus

MapPosition
comment: A position on a genetic map.
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:MapPosition:2006-07-31T17-38-07Z
hasa: MapPosition Y2hyb21vc29tZQ%3D%3D%0A
hasa: MapPosition c3RhcnQ%3D%0A
hasa: MapPosition ZW5k%0A
subclass of: Object

MapPosition Y2hyb21vc29tZQ%3D%3D%0A
type: String
article name: chromosome

MapPosition c3RhcnQ%3D%0A
type: Float
article name: start

MapPosition ZW5k%0A
type: Float
article name: end

MappedLocus TWFwUG9zaXRpb24%3D%0A
type: MapPosition
article name: MapPosition

Ontology
comment: Contains a string value representing the GO_TERM
publisher: icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:Ontology:2006-07-30T22-53-38Z
hasa: Ontology Z290ZXJt%0A
subclass of: Object

Ontology Z290ZXJt%0A
type: String
article name: goterm

GCP_Clade
comment: Taxonomy trees centre around the concept of a clade or rooted node of a subtree. The clade data type is semantically constrained as a special kind of GCP_Entity so that it can be treated as a fully documented artifact, including relationships between clade instances modeled using the GCP_EntityRelationship data type in GCP_Entity.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Clade:2007-06-13T02-04-20Z
subclass of: GCP_Entity

NCBI_BLAST_Text
comment: Plaintext Blast report from NCBI Blast software
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:NCBI_BLAST_Text:2001-09-21T16-00-00Z
subclass of: BLAST-Report

BLAST-Report
comment: A parent node for all of the different types of Blast reports
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:BLAST-Report:2006-07-06T21-23-16Z
subclass of: Sequence_alignment_report

FastaConsensiFromGroup
comment: Fasta da base do projeto biofoco.
publisher: www.condor.genoma.cenargen.embrapa.br
identifier: urn:lsid:biomoby.org:objectclass:FastaConsensiFromGroup:2001-09-21T16-00-00Z
subclass of: Object
has: FastaConsensiFromGroup Z3JvdXBDb2Q%3D%0A
has: FastaConsensiFromGroup ZmFzdGE%3D%0A
has: FastaConsensiFromGroup ZGF0ZQ%3D%3D%0A
has: FastaConsensiFromGroup YXV0b3I%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#FastaConsensiFromGroup_cHJvamVjdE5hbWU%3D%0A
type: String
article name: projectName

FastaConsensiFromGroup Z3JvdXBDb2Q%3D%0A
type: String
article name: groupCod

FastaConsensiFromGroup ZmFzdGE%3D%0A
type: String
article name: fasta

FastaConsensiFromGroup ZGF0ZQ%3D%3D%0A
type: String
article name: date

FastaConsensiFromGroup YXV0b3I%3D%0A
type: String
article name: autor

genbank-flatfile
comment: a formatted plaintext genbank flatfile
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:genbank-flatfile:2001-09-21T16-00-00Z
subclass of: text-formatted

MGIS_id
comment: Accession ID in MGIS (http://mgis.grinfo.net)
publisher: bioinfo.inibap.org
identifier: urn:lsid:biomoby.org:objectclass:MGIS_id:2001-09-21T16-00-00Z
hasa: MGIS id dmVybmFjdWxhck5hbWU%3D%0A
subclass of: Object

MGIS id dmVybmFjdWxhck5hbWU%3D%0A
type: String
article name: vernacularName

SchematikonSegmentAttributes
comment: PDB ID, chain ID, starting amino acid position (chain position) in the PDB file, insert code, and length for a Schematikon structure segment -- attributes from a PDB file that uniquely identify a structure segment in the Schematikon database
publisher: schematikon.org
identifier: urn:lsid:biomoby.org:objectclass:SchematikonSegmentAttributes:2001-09-21T16-00-00Z
subclass of: Object
hasa: SchematikonSegmentAttributes TGVuZ3Ro%0A
hasa: SchematikonSegmentAttributes Q2hhaW4gSUQ%3D%0A
hasa: SchematikonSegmentAttributes UERCIElE%0A

SchematikonSegmentAttributes TGVuZ3Ro%0A
type: Integer
article name: Length

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SchematikonSegmentAttributes_SW5zZXJ0IGNvZGU%3D%0A
type: String
article name: Insert code

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SchematikonSegmentAttributes_U3RhcnRpbmcgYW1pbm8gYWNpZCBwb3NpdGlvbg%3D%3D%0A
type: Integer
article name: Starting amino acid position

SchematikonSegmentAttributes Q2hhaW4gSUQ%3D%0A
type: String
article name: Chain ID

SchematikonSegmentAttributes UERCIElE%0A
type: String
article name: PDB ID

GCP_RelatedAccessions
comment: GCP_RelatedAccession is modeled as a special type of GCP_MaintenanceNeighbourhood which is the set of all GCP_Accession objects that share a common biological ancestral source (e.g. as a single specified sample in a collecting mission, through direct linkages of donations between genebanks).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_RelatedAccessions:2007-06-12T02-15-20Z
subclass of: GCP_MaintenanceNeighbourhood

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_RelatedAccessions_YWNjZXNzaW9ucw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: accessions

GCP_ContactingDetails
comment: GCP_ContactingDetails represents the details of a GCP_LegalEntity relating to its localization in the human world. A GCP_LegalEntity may be located in multiple sites in the world, each of a distinct type specified by a SimpleOntologyTerm (e.g. Home, Office, etc. for Persons; Headquarters, In-Country Offices, etc. for Organizations, ). ContactingDetails obviously include information like address and an associated postalCode. GCP_ContactingDetails points to the GCP_OntologyTerm defined jurisdiction via GCP_SimpleIdentifiers. The jurisdiction of a ContactingDetail location is the local (village and/or municipality), subnational (regional) and national (country) geopolitical jurisdictions within which the address is located. The address and the communicationDetails are modeled as MOBY:String collection.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_ContactingDetails:2006-11-28T09-14-00Z
subclass of: GCP_Identifier
has: GCP ContactingDetails YWRkcmVzcw%3D%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_ContactingDetails_anVyaXNkaWN0aW9u%0A
type: GCP_SimpleIdentifier
article name: jurisdiction

GCP ContactingDetails YWRkcmVzcw%3D%3D%0A
type: String
article name: address

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_ContactingDetails_Y29tbXVuaWNhdGlvbkRldGFpbHM%3D%0A
type: String
article name: communicationDetails

GenefarmBiochemicalFunction
comment: a biochemical function
publisher: urgi.infobiogen.fr
identifier: urn:lsid:biomoby.org:objectclass:GenefarmBiochemicalFunction:2006-09-05T15-56-00Z
subclass of: Object

MSF
comment: Multiple Sequence Format
publisher: genopole.toulouse.inra.fr
identifier: urn:lsid:biomoby.org:objectclass:MSF:2001-09-21T16-00-00Z
subclass of: Alignment

NCut_Matrix
comment: Text formatted that is returned by runNCut services and contains a matrix of homologous sequence whose values are the distance among themselves
publisher: pdg.cnb.uam.es
identifier: urn:lsid:biomoby.org:objectclass:NCut_Matrix:2001-09-21T16-00-00Z
subclass of: text-formatted

AnnotatedStructure
comment: Annotated structure: domains and fragments.
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:AnnotatedStructure:2006-10-05T10-03-02Z
subclass of: PDB-Text
hasa: AnnotatedStructure U291cmNl%0A

AnnotatedStructure U291cmNl%0A
type: String
article name: Source

StructureDomain
comment: Information on structure domains
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:StructureDomain:2006-10-05T09-59-53Z
subclass of: Object
hasa: StructureDomain TmFtZQ%3D%3D%0A
has: StructureDomain U2VnbWVudHM%3D%0A

StructureDomain TmFtZQ%3D%3D%0A
type: String
article name: Name

StructureDomain U2VnbWVudHM%3D%0A
type: StructureBoundaries
article name: Segments

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#AnnotatedStructure_U3RydWN0dXJlRG9tYWlucw%3D%3D%0A
type: StructureDomain
article name: StructureDomains

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#AnnotatedStructure_U3RydWN0dXJlRnJhZ21lbnRz%0A
type: StructureFragment
article name: StructureFragments

VirtualPrimerPair
comment: Two Primers and parameters for a virtual PCR
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:VirtualPrimerPair:2006-06-27T18-45-27Z
subclass of: Object
hasa: VirtualPrimerPair VGhyZWVQcmltZXI%3D%0A
hasa: VirtualPrimerPair U2VxREI%3D%0A
hasa: VirtualPrimerPair TWF4RGlzdGFuY2U%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#VirtualPrimerPair_Rml2ZVByaW1lcg%3D%3D%0A
type: String
article name: FivePrimer

VirtualPrimerPair VGhyZWVQcmltZXI%3D%0A
type: String
article name: ThreePrimer

VirtualPrimerPair U2VxREI%3D%0A
type: String
article name: SeqDB

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#VirtualPrimerPair_TWlzbWF0Y2hlcw%3D%3D%0A
type: Integer
article name: Mismatches

VirtualPrimerPair TWF4RGlzdGFuY2U%3D%0A
type: Integer
article name: MaxDistance

LabeledExtractData
comment: This represents a labeled extract.
publisher: www.rri.sari.ac.uk
identifier: urn:lsid:biomoby.org:objectclass:LabeledExtractData:2006-07-31T13-38-28Z
subclass of: MeasuredBioMaterialData
hasa: LabeledExtractData bGFiZWw%3D%0A

LabelData
comment: This represents a labeling compund use to label extracts.
publisher: www.rri.sari.ac.uk
identifier: urn:lsid:biomoby.org:objectclass:LabelData:2006-07-31T13-36-59Z
subclass of: Object
hasa: LabelData bmFtZQ%3D%3D%0A
hasa: LabelData ZGVzY3JpcHRpb24%3D%0A

LabelData bmFtZQ%3D%3D%0A
type: String
article name: name

LabelData ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

LabeledExtractData bGFiZWw%3D%0A
type: LabelData
article name: label

Interactor
comment: An interactor is a reference to an object, with a role
publisher: pdg.cnb.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Interactor:2001-09-21T16-00-00Z
hasa: Interactor cm9sZQ%3D%3D%0A
subclass of: Object

Interactor cm9sZQ%3D%3D%0A
type: String
article name: role

GCP_Location
comment: A GCP_Location is a fully-documented kind of GCP_Map Additional details associated with the location (i.e. synonyms, environmental conditions, etc.) would be retrievable through suitable web services. See Demeter GeoPosition model for details.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Location:2007-06-17T06-11-30Z
subclass of: GCP_Map
hasa: GCP Location c2ltcGxlTG9jYXRpb24%3D%0A
hasa: GCP Location Y3JlYXRpb25UaW1l%0A
hasa: GCP Location ZGVzdHJ1Y3Rpb25UaW1l%0A

GCP_SimpleLocation
comment: A GCP_SimpleLocation is a kind of GCP_MapFeature that answers a lightweight version of the question "where?" as it relates to a specified geographical (cartographic) context. See Demeter GeoPosition model for details.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_SimpleLocation:2007-06-17T06-07-33Z
subclass of: GCP_MapFeature
hasa: GCP SimpleLocation Z2VvUmVmZXJlbmNl%0A

GCP SimpleLocation Z2VvUmVmZXJlbmNl%0A
type: GCP_MapFeature
article name: geoReference

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_SimpleLocation_ZW5jbG9zaW5nQWRtaW5pc3RyYXRpdmVEaXZpc2lvbg%3D%3D%0A
type: GCP_SimpleIdentifier
article name: enclosingAdministrativeDivision

GCP Location c2ltcGxlTG9jYXRpb24%3D%0A
type: GCP_SimpleLocation
article name: simpleLocation

GCP Location Y3JlYXRpb25UaW1l%0A
type: DateTime
article name: creationTime

GCP Location ZGVzdHJ1Y3Rpb25UaW1l%0A
type: DateTime
article name: destructionTime

CommentedRNASequence
comment: Represents a RNA Sequence including a String (Description).
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:CommentedRNASequence:2001-09-21T16-00-00Z
subclass of: RNASequence

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#CommentedRNASequence_RGVzY3JpcHRpb24%3D%0A
type: String
article name: Description

RNASequence
comment: Lightweight representation an RNA sequence
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:RNASequence:2001-09-21T16-00-00Z
subclass of: NucleotideSequence

FASTA_AA
comment: AA sequence in FASTA format
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:FASTA_AA:2001-09-21T16-00-00Z
subclass of: FASTA

GCP_Accession
comment: An Accession is modeled as a special type of GCP_ManagementNeighbourhood. A GCP_Accession has passport data which is not explicitly connected to the object but rather, obtained using a suitable web service call. The identification of the GCP_Accession is a globally distinct identifier whose MOBY namespace specifies the genetic resources collection ("genebank") which manages it.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Accession:2007-06-13T01-24-59Z
subclass of: GCP_ManagementNeighbourhood
hasa: GCP Accession cGFzc3BvcnQ%3D%0A

GCP Accession cGFzc3BvcnQ%3D%0A
type: GCP_SimpleIdentifier
article name: passport

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Accession_aXNQYXJ0T2ZIb2xkZXJDb3JlQ29sbGVjdGlvbg%3D%3D%0A
type: Boolean
article name: isPartOfHolderCoreCollection

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Accession_cmVsYXRlZEFjY2Vzc2lvbnM%3D%0A
type: GCP_SimpleIdentifier
article name: relatedAccessions

Clustalw_Text
comment: Clustalw multiple sequence alignment report.
publisher: org.inab.upc
identifier: urn:lsid:biomoby.org:objectclass:Clustalw_Text:2006-02-28T12-39-01Z
subclass of: Sequence_alignment_report

PSIBLAST_Text
comment: PSIBLAST report
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:PSIBLAST_Text:2006-10-06T09-53-04Z
subclass of: BLAST-Text

b64_Encoded_Postscript
comment: Base 64 encoded Postscript image
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:b64_Encoded_Postscript:2001-09-21T16-00-00Z
subclass of: text-base64

TranscriptionUnit
comment: Fundamental unit in considering gene.
publisher: www.nias.affrc.go.jp
identifier: urn:lsid:biomoby.org:objectclass:TranscriptionUnit:2001-09-21T16-00-00Z
has: TranscriptionUnit cHJvYmVpZA%3D%3D%0A
subclass of: GeneId

TranscriptionUnit cHJvYmVpZA%3D%3D%0A
type: ProbeId
article name: probeid

GeneId
comment: LocusID from KOME database. e.g. RO3-AC079887-30020F.
publisher: www.nias.affrc.go.jp
identifier: urn:lsid:biomoby.org:objectclass:GeneId:2001-09-21T16-00-00Z
subclass of: Object

Sample
comment: This is a sample object
publisher: cegen.upf.es
identifier: urn:lsid:biomoby.org:objectclass:Sample:2001-09-21T16-00-00Z
hasa: Sample Y29kZQ%3D%3D%0A
hasa: Sample YWZmZWN0YXRpb24%3D%0A
subclass of: Object

Sample Y29kZQ%3D%3D%0A
type: String
article name: code

Sample YWZmZWN0YXRpb24%3D%0A
type: Integer
article name: affectation

allele_freq
comment: Allele Frequencey
publisher: www.hapmap.org
identifier: urn:lsid:biomoby.org:objectclass:allele_freq:2001-09-21T16-00-00Z
has: allele freq
has: allele freq ZnJlcXVlbmN5%0A
hasa: allele freq cGFuZWxfbHNpZA%3D%3D%0A
hasa: allele freq c25wX2xzaWQ%3D%0A

allele freq ZnJlcXVlbmN5%0A
type: Integer
article name: frequency

allele freq cGFuZWxfbHNpZA%3D%3D%0A
type: Object
article name: panel_lsid

allele freq c25wX2xzaWQ%3D%0A
type: Object
article name: snp_lsid

InterProScanResult_Raw
comment: InterProScan result file in raw format
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:InterProScanResult_Raw:2001-09-21T16-00-00Z
subclass of: text-formatted

zPDB
comment: a WIP of a compacted and encoded PDB file
publisher: prot3.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:zPDB:2001-09-21T16-00-00Z
subclass of: text-base64

Trait_Details
comment: ICIS Property/Trait Information
publisher: www.iris.irri.org
identifier: urn:lsid:biomoby.org:objectclass:Trait_Details:2001-09-21T16-00-00Z
hasa: Trait Details dHJhaXRfZGVzYw%3D%3D%0A
subclass of: Object
hasa: Trait Details bnVtX3N0dWRpZXM%3D%0A
hasa: Trait Details dHJhaXRfYWJicg%3D%3D%0A
hasa: Trait Details dHJhaXRfaWQ%3D%0A
hasa: Trait Details dHJhaXRfbmFtZQ%3D%3D%0A

Trait Details dHJhaXRfZGVzYw%3D%3D%0A
type: String
article name: trait_desc

Trait Details bnVtX3N0dWRpZXM%3D%0A
type: Integer
article name: num_studies

Trait Details dHJhaXRfYWJicg%3D%3D%0A
type: String
article name: trait_abbr

Trait Details dHJhaXRfaWQ%3D%0A
type: Integer
article name: trait_id

Trait Details dHJhaXRfbmFtZQ%3D%3D%0A
type: String
article name: trait_name

IMGA_Accession
comment: IMGA (http://medicago.org/genome/IMGAG.php) accession code
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:IMGA_Accession:2001-09-21T16-00-00Z
hasa: IMGA Accession Y29udGVudA%3D%3D%0A
subclass of: Object

IMGA Accession Y29udGVudA%3D%3D%0A
type: String
article name: content

StrideOutput
comment: the result of a Stride process
publisher: prot3.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:StrideOutput:2001-09-21T16-00-00Z
has: StrideOutput U1RS%0A
has: StrideOutput U0VR%0A
subclass of: Object

StrideOutput U1RS%0A
type: String
article name: STR

StrideOutput U0VR%0A
type: String
article name: SEQ

BoundingBox
comment: Longitud/latitude bounding box delimited by: Left Right Upper Lower
publisher: www.gbif.org
identifier: urn:lsid:biomoby.org:objectclass:BoundingBox:2006-08-16T14-24-17Z
subclass of: Object
hasa: BoundingBox TGVmdA%3D%3D%0A
hasa: BoundingBox UmlnaHQ%3D%0A
hasa: BoundingBox VXBwZXI%3D%0A
hasa: BoundingBox TG93ZXI%3D%0A

BoundingBox TGVmdA%3D%3D%0A
type: LongitudeDecimal
article name: Left

BoundingBox UmlnaHQ%3D%0A
type: LongitudeDecimal
article name: Right

BoundingBox VXBwZXI%3D%0A
type: LatitudeDecimal
article name: Upper

BoundingBox TG93ZXI%3D%0A
type: LatitudeDecimal
article name: Lower

Wildcard_Query
comment: Text Query for IRIS which allows wildcards
publisher: www.iris.irri.org
identifier: urn:lsid:biomoby.org:objectclass:Wildcard_Query:2001-09-21T16-00-00Z
subclass of: Object
hasa: Wildcard Query ZW5kX3Jvdw%3D%3D%0A
hasa: Wildcard Query c3RhcnRfcm93%0A

Wildcard Query ZW5kX3Jvdw%3D%3D%0A
type: Integer
article name: end_row

Wildcard Query c3RhcnRfcm93%0A
type: Integer
article name: start_row

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Wildcard_Query_Z2VybXBsYXNtX25hbWU%3D%0A
type: String
article name: germplasm_name

MMP_Locus
comment: Maize Mapping Project Locus Id
publisher: www.maizemap.org
identifier: urn:lsid:biomoby.org:objectclass:MMP_Locus:2001-09-21T16-00-00Z
subclass of: Object

CodcmpReport_Text
comment: Codcmp report.
publisher: inb.bsc.es
identifier: urn:lsid:biomoby.org:objectclass:CodcmpReport_Text:2006-05-30T04-58-14Z
subclass of: text_formatted

HAMAP_Family
comment: HAMAP database complete entry
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:HAMAP_Family:2001-09-21T16-00-00Z
subclass of: Object
hasa: HAMAP Family ZGVzY3JpcHRpb24%3D%0A
hasa: HAMAP Family YWxpZ25tZW50%0A

HAMAP Family ZGVzY3JpcHRpb24%3D%0A
type: swissprot-flatfile
article name: description

HAMAP Family YWxpZ25tZW50%0A
type: clustal-aln-formatted-text
article name: alignment

MGIS_Query
comment: Evaluation and characterization criteria available in MGIS (http://mgis.grinfo.net)
publisher: bioinfo.inibap.org
identifier: urn:lsid:biomoby.org:objectclass:MGIS_Query:2001-09-21T16-00-00Z
hasa: MGIS Query bWNwZDpPUklHQ1RZ%0A
hasa: MGIS Query bWNwZDpDT0xMQ09ERQ%3D%3D%0A
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9QdWxwX0luX0ZydWl0%0A
type: String
article name: Characterization_Pulp_In_Fruit

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9QdWxwX0NvbG91cl9BdF9NYXR1cml0eQ%3D%3D%0A
type: String
article name: Characterization_Pulp_Colour_At_Maturity

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9QcmVzZW5jZV9PZl9TZWVkc19XaXRoX1NvdXJjZV9PZl9Qb2xsZW4%3D%0A
type: String
article name: Characterization_Presence_Of_Seeds_With_Source_Of_Pollen

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9GcnVpdF9TaGFwZQ%3D%3D%0A
type: String
article name: Characterization_Fruit_Shape

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9GcnVpdF9HZW5lcmFsX1NoYXBl%0A
type: String
article name: Characterization_Fruit_General_Shape

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9OdW1iZXJfT2ZfU3Vja2Vycw%3D%3D%0A
type: String
article name: Characterization_Number_Of_Suckers

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9EZXZlbG9wbWVudF9PZl9TdWNrZXJz%0A
type: String
article name: Characterization_Development_Of_Suckers

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9CdW5jaF9TaGFwZQ%3D%3D%0A
type: String
article name: Characterization_Bunch_Shape

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9SYWNoaXNfVHlwZQ%3D%3D%0A
type: String
article name: Characterization_Rachis_Type

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9SYWNoaXNfUG9zaXRpb24%3D%0A
type: String
article name: Characterization_Rachis_Position

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9NYWxlX0J1ZF9UeXBl%0A
type: String
article name: Characterization_Male_Bud_Type

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9NYXR1cmVfRnJ1aXRfUGVlbF9Db2xvdXI%3D%0A
type: String
article name: Characterization_Mature_Fruit_Peel_Colour

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9OdW1iZXJfT2ZfRnJ1aXRz%0A
type: String
article name: Characterization_Number_Of_Fruits

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9GcnVpdF9MZW5ndGg%3D%0A
type: String
article name: Characterization_Fruit_Length

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9Qc2V1ZG9zdGVtX0hlaWdodA%3D%3D%0A
type: String
article name: Characterization_Pseudostem_Height

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_Q2hhcmFjdGVyaXphdGlvbl9Ed2FyZmlzbQ%3D%3D%0A
type: String
article name: Characterization_Dwarfism

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QWJpb3RpY19zdHJlc3NfSGlnaHRlbXA%3D%0A
type: String
article name: Abiotic_stress_Hightemp

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QWJpb3RpY19zdHJlc3NfTWFuZ2FuZXNldG94%0A
type: String
article name: Abiotic_stress_Manganesetox

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QWJpb3RpY19zdHJlc3NfU29pbGFjaWRpdHk%3D%0A
type: String
article name: Abiotic_stress_Soilacidity

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QWJpb3RpY19zdHJlc3NfV2luZHM%3D%0A
type: String
article name: Abiotic_stress_Winds

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QWJpb3RpY19zdHJlc3NfTWluZXJhbGRlZg%3D%3D%0A
type: String
article name: Abiotic_stress_Mineraldef

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QWJpb3RpY19zdHJlc3NfRmxvb2Rpbmc%3D%0A
type: String
article name: Abiotic_stress_Flooding

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QWJpb3RpY19zdHJlc3NfRHJvdWdodA%3D%3D%0A
type: String
article name: Abiotic_stress_Drought

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QWJpb3RpY19zdHJlc3NfTG93dGVtcA%3D%3D%0A
type: String
article name: Abiotic_stress_Lowtemp

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QmlvdGljX3N0cmVzc19jb3Ntb3BvbGl0ZXM%3D%0A
type: String
article name: Biotic_stress_cosmopolites

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QmlvdGljX3N0cmVzc19QcmF0eWxlbmNodXNnb29k%0A
type: String
article name: Biotic_stress_Pratylenchusgood

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QmlvdGljX3N0cmVzc19QcmF0eWxlbmNodXNjb2Y%3D%0A
type: String
article name: Biotic_stress_Pratylenchuscof

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QmlvdGljX3N0cmVzc19SYWRvcGhvbHVz%0A
type: String
article name: Biotic_stress_Radopholus

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QmlvdGljX3N0cmVzc19wc2V1ZG9tb25hcw%3D%3D%0A
type: String
article name: Biotic_stress_pseudomonas

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QmlvdGljX3N0cmVzc19GdXNhcml1bQ%3D%3D%0A
type: String
article name: Biotic_stress_Fusarium

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QmlvdGljX3N0cmVzc19CbGFja3NpZw%3D%3D%0A
type: String
article name: Biotic_stress_Blacksig

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#MGIS_Query_QmlvdGljX3N0cmVzc19ZZWxsb3dzaWc%3D%0A
type: String
article name: Biotic_stress_Yellowsig

MGIS Query bWNwZDpPUklHQ1RZ%0A
type: String
article name: mcpd:ORIGCTY

MGIS Query bWNwZDpDT0xMQ09ERQ%3D%3D%0A
type: String
article name: mcpd:COLLCODE

PDBLigand
comment: Information about a PDB ligand
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:PDBLigand:2006-10-03T10-13-15Z
hasa: PDBLigand Zm9ybXVsYQ%3D%3D%0A
hasa: PDBLigand bXc%3D%0A
hasa: PDBLigand Y2hhcmdl%0A
hasa: PDBLigand c3lub255bXM%3D%0A
hasa: PDBLigand bnVtQXRvbXM%3D%0A
hasa: PDBLigand bmFtZQ%3D%3D%0A
subclass of: Object

PDBLigand Zm9ybXVsYQ%3D%3D%0A
type: String
article name: formula

PDBLigand bXc%3D%0A
type: Float
article name: mw

PDBLigand Y2hhcmdl%0A
type: Integer
article name: charge

PDBLigand c3lub255bXM%3D%0A
type: String
article name: synonyms

PDBLigand bnVtQXRvbXM%3D%0A
type: Integer
article name: numAtoms

PDBLigand bmFtZQ%3D%3D%0A
type: String
article name: name

Pair_Text
comment: Pair-wise sequence default format.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Pair_Text:2001-09-21T16-00-00Z
subclass of: text-formatted

SampleData
comment: This represents a sample.
publisher: www.rri.sari.ac.uk
identifier: urn:lsid:biomoby.org:objectclass:SampleData:2006-07-31T13-33-49Z
subclass of: MeasuredBioMaterialData

GB
comment: Sequence in GENBANK format.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:GB:2001-09-21T16-00-00Z
subclass of: text-formatted

RefSeq-Text
comment: RefSeq entry.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:RefSeq-Text:2001-09-21T16-00-00Z
subclass of: text-formatted

GCP_Indexing
comment: Aside from the MOBY modeling considerations noted above in the introduction, GCP_Indexing is generally as per the Demeter model except that it inherits its object status directly from MOBY:Object and models classificationCodes as GCP_SimpleIdentifier objects that identify classification code ontology terms.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Indexing:2007-06-06T01-34-11Z
subclass of: Object
hasa: GCP Indexing bGlicmFyaWFu%0A
hasa: GCP Indexing YXV0aG9yaXR5%0A
has: GCP Indexing c3ViamVjdEhlYWRpbmdz%0A
has: GCP Indexing a2V5d29yZHM%3D%0A

GCP Indexing bGlicmFyaWFu%0A
type: GCP_SimpleIdentifier
article name: librarian

GCP Indexing YXV0aG9yaXR5%0A
type: GCP_SimpleIdentifier
article name: authority

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Indexing_c3ViamVjdEhlYWRpbmdPbnRvbG9neQ%3D%3D%0A
type: GCP_SimpleIdentifier
article name: subjectHeadingOntology

GCP Indexing c3ViamVjdEhlYWRpbmdz%0A
type: String
article name: subjectHeadings

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Indexing_Y2xhc3NpZmljYXRpb25Db2Rlcw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: classificationCodes

GCP Indexing a2V5d29yZHM%3D%0A
type: String
article name: keywords

TropGENE_ALLELE_FREQUENCY
comment: table of allele frequency for a pool of accessions, ordered by type of markers and locus
publisher: tropgenedb.cirad.fr
identifier: urn:lsid:biomoby.org:objectclass:TropGENE_ALLELE_FREQUENCY:2001-09-21T16-00-00Z
subclass of: text-formatted

MappingSequence
comment: NucleotideSequence, fasta file for mapping, allowed mismatches
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:MappingSequence:2006-06-27T13-47-15Z
hasa: MappingSequence U2VxREI%3D%0A
hasa: MappingSequence TWlzbWF0Y2hlcw%3D%3D%0A
subclass of: NucleotideSequence

MappingSequence U2VxREI%3D%0A
type: String
article name: SeqDB

MappingSequence TWlzbWF0Y2hlcw%3D%3D%0A
type: Integer
article name: Mismatches

Record
comment: A database record containing zero or more String objects. String articleName attribute = field name. String content = field data.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:Record:2006-03-01T18-35-13Z
has: Record cmVjb3Jk%0A
subclass of: Object

Record cmVjb3Jk%0A
type: String
article name: record

GeneInfo
comment: Characteristics of gene. The annotation string should always have namespace NCBI_Acc and an ID.
publisher: www.nias.affrc.go.jp
identifier: urn:lsid:biomoby.org:objectclass:GeneInfo:2001-09-21T16-00-00Z
subclass of: GeneId
hasa: GeneInfo c2VxdWVuY2U%3D%0A
hasa: GeneInfo cG9zaXRpb24%3D%0A
hasa: GeneInfo YW5ub3RhdGlvbg%3D%3D%0A
has: GeneInfo b3J0aG9sb2dHZW5l%0A

GeneInfo c2VxdWVuY2U%3D%0A
type: NucleotideSequence
article name: sequence

GeneInfo cG9zaXRpb24%3D%0A
type: Position
article name: position

GeneInfo YW5ub3RhdGlvbg%3D%3D%0A
type: String
article name: annotation

GeneInfo b3J0aG9sb2dHZW5l%0A
type: GeneId
article name: orthologGene

nsSNP
comment: Contains string values, which represents alleles, strand positions, codon positions, amino acid variants and positions for specific SNP
publisher: icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:nsSNP:2006-04-02T17-05-52Z
subclass of: Object
hasa: nsSNP Y29kb25fcG9z%0A
hasa: nsSNP YWxsZWxl%0A
hasa: nsSNP c3RyYW5k%0A
hasa: nsSNP YWFfdmFy%0A
hasa: nsSNP YWFfcG9z%0A

nsSNP Y29kb25fcG9z%0A
type: String
article name: codon_pos

nsSNP YWxsZWxl%0A
type: String
article name: allele

nsSNP c3RyYW5k%0A
type: String
article name: strand

nsSNP YWFfdmFy%0A
type: String
article name: aa_var

nsSNP YWFfcG9z%0A
type: String
article name: aa_pos

BriefOccurrenceRecord
comment: Brief description of a taxon returned by the GBIFGetTaxonConcepts.
publisher: www.gbif.org
identifier: urn:lsid:biomoby.org:objectclass:BriefOccurrenceRecord:2006-08-14T13-00-51Z
hasa: BriefOccurrenceRecord VGF4b25JZA%3D%3D%0A
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BriefOccurrenceRecord_UmVzb3VyY2VJZA%3D%3D%0A
type: String
article name: ResourceId

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BriefOccurrenceRecord_Q291bnRyeUNvZGU%3D%0A
type: String
article name: CountryCode

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#BriefOccurrenceRecord_VGF4b25DYW5vbmljYWw%3D%0A
type: String
article name: TaxonCanonical

BriefOccurrenceRecord VGF4b25JZA%3D%3D%0A
type: String
article name: TaxonId

GCP_MapInterval
comment: A GCP_MapInterval is a segment pair of coordinates defining a GCP_MapPosition.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MapInterval:2007-06-17T01-27-09Z
subclass of: GCP_MapPosition
hasa: GCP MapInterval ZW5kUG9zaXRpb24%3D%0A

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_MapInterval_c3RhcnRQb3NpdGlvbg%3D%3D%0A
type: GCP_Value
article name: startPosition

GCP MapInterval ZW5kUG9zaXRpb24%3D%0A
type: GCP_Value
article name: endPosition

Signature_cleave_motif
comment: Header and table showing the predicted cleavage sites in a sequence by means of runEMBOSSSigcleave service.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Signature_cleave_motif:2001-09-21T16-00-00Z
subclass of: Object
hasa: Signature cleave motif RnJvbQ%3D%3D%0A
hasa: Signature cleave motif VG8%3D%0A
hasa: Signature cleave motif SGl0Y291bnQ%3D%0A
hasa: Signature cleave motif UmVwb3J0%0A
has: Signature cleave motif

Signature cleave motif RnJvbQ%3D%3D%0A
type: Integer
article name: From

Signature cleave motif VG8%3D%0A
type: Integer
article name: To

Signature cleave motif SGl0Y291bnQ%3D%0A
type: Integer
article name: Hitcount

Signature cleave motif UmVwb3J0%0A
type: Integer
article name: Report

Signature_cleave_table
comment: Table showing the predicted cleavage sites in a sequence.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Signature_cleave_table:2001-09-21T16-00-00Z
subclass of: Object
hasa: Signature cleave table U3RhcnQ%3D%0A
hasa: Signature cleave table RW5k%0A
hasa: Signature cleave table U2NvcmU%3D%0A

Signature cleave table U3RhcnQ%3D%0A
type: Integer
article name: Start

Signature cleave table RW5k%0A
type: Integer
article name: End

Signature cleave table U2NvcmU%3D%0A
type: Integer
article name: Score

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#Signature_cleave_table_TWF0dXJlUGVwdGlkZQ%3D%3D%0A
type: Integer
article name: MaturePeptide

CDNALibrary
comment: A cDNA Library
publisher: eva.mpg.de
identifier: urn:lsid:biomoby.org:objectclass:CDNALibrary:2001-09-21T16-00-00Z
subclass of: Object
hasa: CDNALibrary aWQ%3D%0A

CDNALibrary aWQ%3D%0A
type: Integer
article name: id

Image_PNG
comment: A new version of container for a PNG image, base64 encoded in a string.
publisher: objects.jmoby.net
identifier: urn:lsid:biomoby.org:objectclass:Image_PNG:2001-09-21T16-00-00Z
hasa: Image PNG aW1hZ2VkYXRh%0A
subclass of: Object

Image PNG aW1hZ2VkYXRh%0A
type: String
article name: imagedata

GeneticMap
comment: A genetic map contains mapped loci. The length component should indicate the length of the map in map units, but does NOT have to be zero-based; i.e. the length is simply the distance from the most proximal to the most distal marker on the map, regardless of whether or not the proximal marker is at position '0' on the map. It is likely that, in many cases, the namespace and id of this GeneticMap will be identical to the namespace and id of the 'chromosome' component of the MappedLoci's MapPosition, but this isn't required if the various Loci are more sensibly associated with another map.
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:GeneticMap:2006-07-31T17-47-08Z
has: GeneticMap TWFwcGVkTG9jdXM%3D%0A
hasa: GeneticMap bGVuZ3Ro%0A
subclass of: Object

GeneticMap TWFwcGVkTG9jdXM%3D%0A
type: MappedLocus
article name: MappedLocus

GeneticMap bGVuZ3Ro%0A
type: Float
article name: length

EvocDIGDescription
comment: A DIGDescription using only terms from the Evoc Ontology
publisher: eva.mpg.de
identifier: urn:lsid:biomoby.org:objectclass:EvocDIGDescription:2001-09-21T16-00-00Z
subclass of: DIGDescription

WU_BLAST_Text
comment: Plaintext Blast report from WU-Blast software
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:WU_BLAST_Text:2001-09-21T16-00-00Z
subclass of: BLAST-Report

GFF1
comment: Generic Feature Format File type 1 (original Sanger specification)
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:GFF1:2001-09-21T16-00-00Z
subclass of: GFF

nsSNP_genomic
comment: Contains three string values: strand, condon_pos, allele
publisher: icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:nsSNP_genomic:2006-03-31T20-48-50Z
subclass of: Object
hasa: nsSNP genomic U3RyYW5k%0A
hasa: nsSNP genomic Q29kb25fUG9z%0A
hasa: nsSNP genomic QWxsZWxl%0A

nsSNP genomic U3RyYW5k%0A
type: String
article name: Strand

nsSNP genomic Q29kb25fUG9z%0A
type: String
article name: Codon_Pos

nsSNP genomic QWxsZWxl%0A
type: String
article name: Allele

GCP_BiologicalSample
comment: A GCP_BiologicalSample is a modeled as a kind of Germplasm to which transformations may be applied. It is typically obtained from an organismPart at a specified developmentStage (both annotation specified as a controlled vocabulary identified by GCP_SimpleIdentifier).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_BiologicalSample:2007-06-17T04-18-50Z
subclass of: GCP_Germplasm

GCP_Germplasm
comment: GCP_Germplasm inherits alot of its basic functionality from GCP_Entity. Every germplasm sample requires a unique identifier. This model facility for achieving this comes by inheritance of the Germplasm model from the Entity model, which itself, inherits from Identifier.(Germplasm-to-germplasm relationships are modeled as GCP_EntityRelationship instances of type specified by the GCP GermplasmRelationship ontology) In the GCP domain model, Germplasm refers to living plant material carrying genetic information that may be propagated naturally or artificially, either by sexual reproduction or clonally. The Germplasm domain model describes such instances of seed or clonal stocks of a specified and distinct genetic composition. A germplasm sample or instance can be thought of as a packet of seeds (or other propagating material) that is managed separately from other packets of seeds in a collection in a sense that germplasm specialists would not want to mix them. - type: an ontology term that describes the germplasm (e.g. seed/whole plant, tissue culture, cell culture, clone) - taxon: holds classification information (e.g. genus, species) for the germplasm
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Germplasm:2006-11-28T09-20-31Z
subclass of: GCP_Entity
hasa: GCP Germplasm dHlwZQ%3D%3D%0A
hasa: GCP Germplasm Y3JvcE5hbWU%3D%0A
hasa: GCP Germplasm dGF4b24%3D%0A
hasa: GCP Germplasm YWNxdWlzaXRpb25EYXRl%0A

GCP Germplasm dHlwZQ%3D%3D%0A
type: GCP_SimpleIdentifier
article name: type

GCP Germplasm Y3JvcE5hbWU%3D%0A
type: GCP_SimpleIdentifier
article name: cropName

GCP Germplasm dGF4b24%3D%0A
type: GCP_SimpleIdentifier
article name: taxon

GCP Germplasm YWNxdWlzaXRpb25EYXRl%0A
type: DateTime
article name: acquisitionDate

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Germplasm_YWNxdWlzaXRpb25Tb3VyY2U%3D%0A
type: GCP_SimpleIdentifier
article name: acquisitionSource

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Germplasm_YmlvbG9naWNhbFN0YXR1cw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: biologicalStatus

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Germplasm_aW50ZWxsZWN0dWFsUHJvcGVydHlQb3J0Zm9saW8%3D%0A
type: GCP_SimpleIdentifier
article name: intellectualPropertyPortfolio

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_Germplasm_c3RvcmFnZUxvY2F0aW9ucw%3D%3D%0A
type: GCP_SimpleIdentifier
article name: storageLocations

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_BiologicalSample_b3JnYW5pc21QYXJ0%0A
type: GCP_SimpleIdentifier
article name: organismPart

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_BiologicalSample_ZGV2ZWxvcG1lbnRhbFN0YWdl%0A
type: GCP_SimpleIdentifier
article name: developmentalStage

SimpleAnnotatedGIFImage
comment: Object containing a GIF image with descriptive text
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:SimpleAnnotatedGIFImage:2001-09-21T16-00-00Z
subclass of: b64_encoded_gif

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SimpleAnnotatedGIFImage_RGVzY3JpcHRpb24%3D%0A
type: String
article name: Description

BasicClone
comment: Basic object that holds clone information
publisher: gabi.rzpd.de
identifier: urn:lsid:biomoby.org:objectclass:BasicClone:2006-08-18T06-44-50Z
hasa: BasicClone QWNjZXNzUGFnZVVybA%3D%3D%0A
subclass of: Object
hasa: BasicClone S2luZA%3D%3D%0A
hasa: BasicClone U2VxdWVuY2U%3D%0A

BasicClone QWNjZXNzUGFnZVVybA%3D%3D%0A
type: String
article name: AccessPageUrl

BasicClone S2luZA%3D%3D%0A
type: String
article name: Kind

BasicClone U2VxdWVuY2U%3D%0A
type: NucleotideSequence
article name: Sequence

PDB-formatted-text
comment: PDB formatted text
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:PDB-formatted-text:2001-09-21T16-00-00Z
subclass of: text-formatted

Interaction
comment: An interaction object, in native BioMOBY format. It has one or more interactors, a method and a result
publisher: pdg.cnb.uam.es
identifier: urn:lsid:biomoby.org:objectclass:Interaction:2001-09-21T16-00-00Z
has: Interaction cGFydGljaXBhbnQ%3D%0A
hasa: Interaction cmVzdWx0%0A
subclass of: Object
hasa: Interaction cmVzdWx0VW5pdHM%3D%0A

Interaction cGFydGljaXBhbnQ%3D%0A
type: Interactor
article name: participant

Interaction cmVzdWx0%0A
type: String
article name: result

Interaction cmVzdWx0VW5pdHM%3D%0A
type: String
article name: resultUnits

Tree
comment: Phylogenetic tree
publisher: www.phytome.org
identifier: urn:lsid:biomoby.org:objectclass:Tree:2001-09-21T16-00-00Z
subclass of: text-formatted

URL
comment: An Universal Resource Locater (URL).
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:URL:2006-03-01T18-35-11Z
subclass of: Object

GCP_Factor
comment: Factors are the independent (applied) variables to a study. GCP_Study objects dereference their factors via a MOBY:Collection of GCP_SimpleIdentifier objects that resolve to GCP_Factor objects. GCP_Factor inherits most of its functionality from GCP_Feature. The type of feature is the factor "property", the unit of the feature is the factor "scale" and the supportingEvidence documents the factor "method" (sensu ICIS DMS). GCP_Factor reports its levels as a GCP_Constraint.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Factor:2007-06-06T02-49-07Z
hasa: GCP Factor bGV2ZWxz%0A
subclass of: GCP_Feature

GCP Factor bGV2ZWxz%0A
type: GCP_Constraint
article name: levels

GCP_ContactingDetail
comment: GCP_ContactingDetail describes where and how system users may communicate to a specified GCP_LegalEntity located at a particular site (e.g. home, office, etc.). Reflecting the Demeter model, a GCP_ContactingDetail is modeled as a kind of GCP_SimpleFeature which has some additional locational descriptive attributes.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_ContactingDetail:2007-06-06T00-57-12Z
subclass of: GCP_SimpleFeature

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_ContactingDetail_cG9zdGFsQ29kZQ%3D%3D%0A
type: String
article name: postalCode

GCP_CommunicationDetail
comment: A GCP_CommunicationDetail is a GCP_SimpleFeature which documents a mode of communication the type - phone, fax, email, etc. - of which is indicated by a GCP_SimpleIdentifier resolving to a GCP_OntologyTerm, and the communication information itself documented by the valueString.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_CommunicationDetail:2007-06-06T00-51-53Z
subclass of: GCP_SimpleFeature

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_ContactingDetail_Y29tbXVuaWNhdGlvbk1vZGVz%0A
type: GCP_CommunicationDetail
article name: communicationModes

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_ContactingDetail_c3RyZWV0QWRkcmVzcw%3D%3D%0A
type: String
article name: streetAddress

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#GCP_ContactingDetail_YWRtaW5pc3RyYXRpdmVEaXZpc2lvbnM%3D%0A
type: GCP_SimpleIdentifier
article name: administrativeDivisions

DeletionPrediction
comment: Deletion prediction with core (high confidence) and boundaries (lower confidence)
publisher: www.weigelworld.org
identifier: urn:lsid:biomoby.org:objectclass:DeletionPrediction:2006-06-26T15-47-35Z
hasa: DeletionPrediction Qm91bmRhcnk%3D%0A
hasa: DeletionPrediction c3RyYWlu%0A
hasa: DeletionPrediction Q29yZQ%3D%3D%0A
subclass of: Object

DeletionPrediction Qm91bmRhcnk%3D%0A
type: Position
article name: Boundary

DeletionPrediction c3RyYWlu%0A
type: String
article name: strain

DeletionPrediction Q29yZQ%3D%3D%0A
type: Position
article name: Core

interaction_partner
comment: unstable; under development; subject to redefinition or deregistration without notice; please do not use
publisher: llama.med.harvard.edu
identifier: urn:lsid:biomoby.org:objectclass:interaction_partner:2001-09-21T16-00-00Z
subclass of: Object
hasa: interaction partner ZGlyZWN0aW9u%0A
hasa: interaction partner cGFydG5lcg%3D%3D%0A

interaction partner ZGlyZWN0aW9u%0A
type: Integer
article name: direction

interaction partner cGFydG5lcg%3D%3D%0A
type: String
article name: partner

GCP_MolecularPhylogeny
comment: A GCP_MolecularPhylogeny inherits from GCP_Entity to track molecular clades. This data type has sequence and a multiple sequence alignment attributes, both identified by GCP_SimpleIdentifiers.
publisher: www.generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_MolecularPhylogeny:2006-11-28T09-26-42Z
subclass of: GCP_Clade
hasa: GCP MolecularPhylogeny YWxpZ25tZW50%0A
has: GCP MolecularPhylogeny c2VxdWVuY2U%3D%0A

GCP MolecularPhylogeny YWxpZ25tZW50%0A
type: GCP_SimpleIdentifier
article name: alignment

GCP MolecularPhylogeny c2VxdWVuY2U%3D%0A
type: GCP_SimpleIdentifier
article name: sequence

Friend
comment: Objeto Pessoa
publisher: www.ucb.br
identifier: urn:lsid:biomoby.org:objectclass:Friend:2001-09-21T16-00-00Z
hasa: Friend SWRhZGU%3D%0A
hasa: Friend Tm9tZQ%3D%3D%0A
subclass of: Object

Friend SWRhZGU%3D%0A
type: Integer
article name: Idade

Friend Tm9tZQ%3D%3D%0A
type: String
article name: Nome

GCP_Authority
comment: GCP_Authority extends GCP_NameSpace to assert a "namespace of namespaces" that are specified and managed by a given authority, usually defined in terms of a URL and owner.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Authority:2007-06-05T04-58-30Z
hasa: GCP Authority b3duZXI%3D%0A
hasa: GCP Authority VVJM%0A
subclass of: GCP_NameSpace

GCP Authority b3duZXI%3D%0A
type: GCP_SimpleIdentifier
article name: owner

GCP Authority VVJM%0A
type: String
article name: URL

Genotype
comment: This is a genotype object
publisher: cegen.upf.es
identifier: urn:lsid:biomoby.org:objectclass:Genotype:2001-09-21T16-00-00Z
hasa: Genotype c25w%0A
hasa: Genotype c2FtcGxl%0A
hasa: Genotype cmVzdWx0%0A
subclass of: Object

Genotype c25w%0A
type: String
article name: snp

Genotype c2FtcGxl%0A
type: String
article name: sample

Genotype cmVzdWx0%0A
type: String
article name: result

Amigo
comment: Objeto Pessoa
publisher: www.ucb.br
identifier: urn:lsid:biomoby.org:objectclass:Amigo:2001-09-21T16-00-00Z
subclass of: Object
has: Amigo Tm9tZQ%3D%3D%0A
has: Amigo SWRhZGU%3D%0A

Amigo Tm9tZQ%3D%3D%0A
type: String
article name: Nome

Amigo SWRhZGU%3D%0A
type: Integer
article name: Idade

Organism
comment: An organism object.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:Organism:2006-03-01T18-35-20Z
subclass of: Object

Predotar_result
comment: Result from Predotar with or without PlantID result
publisher: genoplante-info.infobiogen.fr
identifier: urn:lsid:biomoby.org:objectclass:Predotar_result:2001-09-21T16-00-00Z
hasa: Predotar result TUlUX1Njb3Jl%0A
hasa: Predotar result RVJfU2NvcmU%3D%0A
hasa: Predotar result UGxhc3RfU2NvcmU%3D%0A
hasa: Predotar result T3RoZXJfU2NvcmU%3D%0A
hasa: Predotar result Q29tcGFydG1lbnQ%3D%0A
subclass of: CompartmentPrediction

Predotar result TUlUX1Njb3Jl%0A
type: Float
article name: MIT_Score

Predotar result RVJfU2NvcmU%3D%0A
type: Float
article name: ER_Score

Predotar result UGxhc3RfU2NvcmU%3D%0A
type: Float
article name: Plast_Score

Predotar result T3RoZXJfU2NvcmU%3D%0A
type: Float
article name: Other_Score

Predotar result Q29tcGFydG1lbnQ%3D%0A
type: String
article name: Compartment

GCP_AdministrativeDivision
comment: A GCP_AdministrativeDivision is a kind of GCP_SimpleLocation that corresponds to regional political division of land, such as a country or subnational region (state/province, city, etc.) See Demeter GeoPosition model for details.
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_AdministrativeDivision:2007-06-17T06-08-41Z
subclass of: GCP_SimpleLocation
hasa: GCP AdministrativeDivision Y291bnRyeQ%3D%3D%0A

GCP AdministrativeDivision Y291bnRyeQ%3D%3D%0A
type: GCP_MapFeature
article name: country

GCP_Taxon
comment: A GCP_Taxon inherits from GCP_Clade to document the full hierarchical biological classification of organisms (e.g. Species of germplasm). A GCP_Taxon has an attribute taxonRank which is documented by a GCP_SimpleIdentifier which identifies to a GCP_OntologyTerm definition that classifies the level of the taxon instance in the taxonomic hierarchy (e.g. "Genus", "Species", etc.).
publisher: generationcp.org
identifier: urn:lsid:biomoby.org:objectclass:GCP_Taxon:2007-06-13T02-05-51Z
hasa: GCP Taxon dGF4b25SYW5r%0A
subclass of: GCP_Clade

GCP Taxon dGF4b25SYW5r%0A
type: GCP_SimpleIdentifier
article name: taxonRank

SchematikonVorocodeName
comment: Lightweight structural representation of Schematikon structure motif
publisher: schematikon.org
identifier: urn:lsid:biomoby.org:objectclass:SchematikonVorocodeName:2001-09-21T16-00-00Z
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#SchematikonVorocodeName_Vm9yb2NvZGVOYW1l%0A
type: String
article name: VorocodeName

Consensus_Sequence_Text
comment: Consensus sequences reflect the most common choice of base or amino acid at each position of a series of related DNA, RNA or protein sequences.
publisher: org.inab.upc
identifier: urn:lsid:biomoby.org:objectclass:Consensus_Sequence_Text:2006-02-28T03-53-26Z
subclass of: text-formatted

GFF3
comment: Generic Feature Format File type 3 (SequenceOntology compliant GFF format)
publisher: www.illuminae.com
identifier: urn:lsid:biomoby.org:objectclass:GFF3:2001-09-21T16-00-00Z
subclass of: GFF

GeneticElement
comment: GeneticElement including name, type, start, stop, strand (0 for forward, 1 for reverse), and description; use name for element identifier (like 'exon_1'), type for the element class (like 'exon')
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:GeneticElement:2006-06-14T11-45-25Z
hasa: GeneticElement c3RyYW5k%0A
subclass of: Object
hasa: GeneticElement ZGVzY3JpcHRpb24%3D%0A
hasa: GeneticElement bmFtZQ%3D%3D%0A
hasa: GeneticElement dHlwZQ%3D%3D%0A
hasa: GeneticElement c3RvcA%3D%3D%0A
hasa: GeneticElement c3RhcnQ%3D%0A

GeneticElement c3RyYW5k%0A
type: Integer
article name: strand

GeneticElement ZGVzY3JpcHRpb24%3D%0A
type: String
article name: description

GeneticElement bmFtZQ%3D%3D%0A
type: String
article name: name

GeneticElement dHlwZQ%3D%3D%0A
type: String
article name: type

GeneticElement c3RvcA%3D%3D%0A
type: Integer
article name: stop

GeneticElement c3RhcnQ%3D%0A
type: Integer
article name: start

Publication
comment: Contains four string values, each representing the author, title of the article, the journal and the abstract of the publication
publisher: bioinfo.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:Publication:2006-11-06T23-55-10Z
hasa: Publication QWJzdHJhY3Q%3D%0A
hasa: Publication VGl0bGU%3D%0A
has: Publication QXV0aG9y%0A
hasa: Publication Sm91cm5hbA%3D%3D%0A
subclass of: Object

Publication QWJzdHJhY3Q%3D%0A
type: String
article name: Abstract

Publication VGl0bGU%3D%0A
type: String
article name: Title

Publication QXV0aG9y%0A
type: String
article name: Author

Publication Sm91cm5hbA%3D%3D%0A
type: String
article name: Journal

SchematikonMotifID
comment: Schematikon protein structure motif ID
publisher: schematikon.org
identifier: urn:lsid:biomoby.org:objectclass:SchematikonMotifID:2001-09-21T16-00-00Z
subclass of: SchematikonSegmentID

prodom-flatfile
comment: ProDom family
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:prodom-flatfile:2006-04-03T13-12-33Z
subclass of: text-formatted

Clustalw_Evaluated_Text
comment: Evaluation of a Clustalw_Text (Clustalw multiple sequence alignment) in ascii format.
publisher: org.inab.upc
identifier: urn:lsid:biomoby.org:objectclass:Clustalw_Evaluated_Text:2006-02-28T09-33-21Z
subclass of: text-formatted

HBond_Pair
comment: Pair of residus
publisher: bioserv.rpbs.jussieu.fr
identifier: urn:lsid:biomoby.org:objectclass:HBond_Pair:2001-09-21T16-00-00Z
hasa: HBond Pair QQ%3D%3D%0A
hasa: HBond Pair SA%3D%3D%0A
hasa: HBond Pair RA%3D%3D%0A
subclass of: Object

HBond Pair QQ%3D%3D%0A
type: String
article name: A

HBond Pair SA%3D%3D%0A
type: String
article name: H

HBond Pair RA%3D%3D%0A
type: String
article name: D

HMMPfam_Report
comment: Reports the results of searching a sequence against a HMM database.
publisher: www.pcm.uam.es
identifier: urn:lsid:biomoby.org:objectclass:HMMPfam_Report:2006-03-21T11-44-54Z
subclass of: Object
hasa: HMMPfam Report SGVhZGVy%0A
hasa: HMMPfam Report U2VxdWVuY2Vz%0A
hasa: HMMPfam Report RG9tYWlucw%3D%3D%0A
hasa: HMMPfam Report QWxpZ25tZW50cw%3D%3D%0A

HMMPfam Report SGVhZGVy%0A
type: String
article name: Header

HMMPfam Report U2VxdWVuY2Vz%0A
type: String
article name: Sequences

HMMPfam Report RG9tYWlucw%3D%3D%0A
type: String
article name: Domains

HMMPfam Report QWxpZ25tZW50cw%3D%3D%0A
type: Stockholm_Text
article name: Alignments

BlastJob
comment: A BLAST job.
publisher: www.bioinformatics.nl
identifier: urn:lsid:biomoby.org:objectclass:BlastJob:2006-03-01T18-36-20Z
subclass of: Object
hasa: BlastJob cHJvZ3JhbQ%3D%3D%0A
hasa: BlastJob ZGF0YWJhc2U%3D%0A
hasa: BlastJob ZmFzdGE%3D%0A

BlastJob cHJvZ3JhbQ%3D%3D%0A
type: Program
article name: program

BlastJob ZGF0YWJhc2U%3D%0A
type: DataBase
article name: database

BlastJob ZmFzdGE%3D%0A
type: FASTA
article name: fasta

DnaSequenceHolder
comment: holds 3 dnasequences
publisher: www.mobycentral.icapture.ubc.ca
identifier: urn:lsid:biomoby.org:objectclass:DnaSequenceHolder:2001-09-21T16-00-00Z
hasa: DnaSequenceHolder U2VxdWVuY2Uz%0A
hasa: DnaSequenceHolder U2VxdWVuY2Ux%0A
hasa: DnaSequenceHolder U2VxdWVuY2Uy%0A
subclass of: Object

DnaSequenceHolder U2VxdWVuY2Uz%0A
type: DNASequence
article name: Sequence3

DnaSequenceHolder U2VxdWVuY2Ux%0A
type: DNASequence
article name: Sequence1

DnaSequenceHolder U2VxdWVuY2Uy%0A
type: DNASequence
article name: Sequence2

AlleleAssociation
comment: This is a alleleAssociation object
publisher: cegen.upf.es
identifier: urn:lsid:biomoby.org:objectclass:AlleleAssociation:2001-09-21T16-00-00Z
hasa: AlleleAssociation c25w%0A
hasa: AlleleAssociation cFZhbHVl%0A
hasa: AlleleAssociation dmFsaWRpdHk%3D%0A
subclass of: Object

AlleleAssociation c25w%0A
type: String
article name: snp

AlleleAssociation cFZhbHVl%0A
type: Float
article name: pValue

AlleleAssociation dmFsaWRpdHk%3D%0A
type: String
article name: validity

Link
comment: contains a string representing a URL (e.g. http://www.eu-plant-genome.net)
publisher: mips.gsf.de
identifier: urn:lsid:biomoby.org:objectclass:Link:2006-05-17T13-26-22Z
subclass of: Object
hasa: Link dXJs%0A

Link dXJs%0A
type: String
article name: url

HMM_Text
comment: Profile hidden Markov models (HMM) are statistical models of multiple sequence alignments.
publisher: org.inab.upc
identifier: urn:lsid:biomoby.org:objectclass:HMM_Text:2006-02-28T04-02-13Z
subclass of: Consensus_Sequence_Text

PMUT_Text
comment: PMUT report
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:PMUT_Text:2006-03-28T13-37-11Z
subclass of: text_formatted

FASTA_AA_multi
comment: Proteic multiple FASTA entries
publisher: bioinfo.genopole-toulouse.prd.fr
identifier: urn:lsid:biomoby.org:objectclass:FASTA_AA_multi:2001-09-21T16-00-00Z
subclass of: FASTA_AA

InterProScanResult
comment: An InterProScan Result
publisher: atidb.org
identifier: urn:lsid:biomoby.org:objectclass:InterProScanResult:2001-09-21T16-00-00Z
hasa: InterProScanResult TWV0aG9k%0A
hasa: InterProScanResult Q2hlY2tzdW0%3D%0A
hasa: InterProScanResult TGVuZ3Ro%0A
hasa: InterProScanResult TWF0Y2hfRW5k%0A
hasa: InterProScanResult RS12YWx1ZQ%3D%3D%0A
hasa: InterProScanResult RGF0ZQ%3D%3D%0A
subclass of: Object

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InterProScanResult_TWF0Y2hfTmFtZQ%3D%3D%0A
type: String
article name: Match_Name

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InterProScanResult_TWF0Y2hfQWNjZXNzaW9u%0A
type: String
article name: Match_Accession

InterProScanResult TWV0aG9k%0A
type: String
article name: Method

InterProScanResult Q2hlY2tzdW0%3D%0A
type: String
article name: Checksum

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InterProScanResult_U2VxdWVuY2VfSWQ%3D%0A
type: String
article name: Sequence_Id

InterProScanResult TGVuZ3Ro%0A
type: Integer
article name: Length

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InterProScanResult_TWF0Y2hfU3RhcnQ%3D%0A
type: Integer
article name: Match_Start

InterProScanResult TWF0Y2hfRW5k%0A
type: Integer
article name: Match_End

InterProScanResult RS12YWx1ZQ%3D%3D%0A
type: Float
article name: E-value

InterProScanResult RGF0ZQ%3D%3D%0A
type: String
article name: Date

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InterProScanResult_SW50ZXJQcm8gTWF0Y2ggQWNjZXNzaW9u%0A
type: String
article name: InterPro Match Accession

http://cropwiki.irri.org/cgi-bin/RESOURCES/MOBY_SUB_COMPONENT/Objects#InterProScanResult_SW50ZXJQcm8gTWF0Y2ggRGVzY3JpcHRpb24%3D%0A
type: String
article name: InterPro Match Description

CommentedObject
comment: Description of an object identified by 'id' in 'namespace'
publisher: mmb.pcb.ub.es
identifier: urn:lsid:biomoby.org:objectclass:CommentedObject:2006-10-05T10-15-26Z
subclass of: Object
hasa: CommentedObject RGVzY3JpcHRpb24%3D%0A

CommentedObject RGVzY3JpcHRpb24%3D%0A
type: String
article name: Description

NCut_Input
comment: Text formatted that contains a representation of distances among homologous sequences
publisher: pdg.cnb.uam.es
identifier: urn:lsid:biomoby.org:objectclass:NCut_Input:2001-09-21T16-00-00Z
subclass of: text-formatted

CodonUsageTableExtended_text
comment: Table reporting several statistical measures of codon usage for a given set of sequences
publisher: moby.ucalgary.ca
identifier: urn:lsid:biomoby.org:objectclass:CodonUsageTableExtended_text:2006-10-23T22-09-16Z
subclass of: text-formatted