<?xml version="1.0" encoding="UTF-8"?>
<s:scufl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha" version="0.2" log="0">
  <s:workflowdescription lsid="urn:lsid:www.mygrid.org.uk:operation:CZ08A861TX0" author="" title="" />
  <s:processor name="kegg_pathway_ns" boring="true">
    <s:stringconstant>KEGG_PATHWAY</s:stringconstant>
  </s:processor>
  <s:processor name="keggID" boring="true">
    <s:stringconstant>hsa00051</s:stringconstant>
  </s:processor>
  <s:processor name="Gene2PubMed" workers="10">
    <s:description>Retrieve list of references and abstracts of publications related to genes of your interest.  Insert the EntrezGene ID (eg 5211,3586)</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</s:mobyEndpoint>
      <s:serviceName>Gene2PubMed</s:serviceName>
      <s:authorityName>icapture.ubc.ca</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="SnpID2GeneInfo" workers="10">
    <s:description>Retrieve list of EntrezGene IDs, gene names, descriptions and summaries, based on list of dbSNP ids (eg rs1057037, rs5054)</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</s:mobyEndpoint>
      <s:serviceName>SnpID2GeneInfo</s:serviceName>
      <s:authorityName>icapture.ubc.ca</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="Kegg2nsSNP" workers="10">
    <s:description>Retrieve list of dbSNP ids, alleles, strand positions, codon positions, amino acid variants and positions for specific non-synonymous SNPs.  Insert the KEGG Pathway ID starting with "hsa" (eg. hsa00051, hsa00010)</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</s:mobyEndpoint>
      <s:serviceName>Kegg2nsSNP</s:serviceName>
      <s:authorityName>icapture.ubc.ca</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="Gene2Ontology" workers="10">
    <s:description>Retrieve list of gene ontologies, based on list of EntrezGene IDs of your interest.</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</s:mobyEndpoint>
      <s:serviceName>Gene2Ontology</s:serviceName>
      <s:authorityName>icapture.ubc.ca</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="Kegg2Frequencies" workers="10">
    <s:description>Return a list of genotype and allele frequencies for non-synonymous SNPs genotyped by HapMap (www.hapmap.org).  Each SNP that is not genotyped is assigned a reference URL to dbSNP site.</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</s:mobyEndpoint>
      <s:serviceName>Kegg2Frequencies</s:serviceName>
      <s:authorityName>icapture.ubc.ca</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="Object">
    <s:description>an object</s:description>
    <s:biomobyobject>
      <s:mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</s:mobyEndpoint>
      <s:serviceName>Object</s:serviceName>
      <s:authorityName />
    </s:biomobyobject>
  </s:processor>
  <s:link source="Kegg2nsSNP:nsSNP(Collection - 'nsSNP_info' As Simples)" sink="SnpID2GeneInfo:Object(dbSNP_ID)" />
  <s:link source="Object:mobyData" sink="Kegg2Frequencies:Object(KEGG_ID)" />
  <s:link source="Object:mobyData" sink="Kegg2nsSNP:Object(KEGG_ID)" />
  <s:link source="SnpID2GeneInfo:gene(Collection - 'gene_info')" sink="Gene2Ontology:Object(gene_id)" />
  <s:link source="SnpID2GeneInfo:gene(Collection - 'gene_info')" sink="Gene2PubMed:Object(gene_id)" />
  <s:link source="keggID:value" sink="Object:id" />
  <s:link source="kegg_pathway_ns:value" sink="Object:namespace" />
  <s:link source="Gene2Ontology:Ontology(Collection - 'ont_info')" sink="ontologies" />
  <s:link source="Gene2PubMed:PubMed(Collection - 'pub_info')" sink="pubmed" />
  <s:link source="Kegg2Frequencies:Frequencies(Collection - 'Freq_Ref')" sink="snp_frequencies" />
  <s:link source="Kegg2nsSNP:nsSNP(Collection - 'nsSNP_info')" sink="nsSNPS" />
  <s:link source="SnpID2GeneInfo:gene(Collection - 'gene_info')" sink="gene_info" />
  <s:sink name="nsSNPS" />
  <s:sink name="snp_frequencies" />
  <s:sink name="gene_info" />
  <s:sink name="ontologies" />
  <s:sink name="pubmed" />
</s:scufl>


